Wall clock time and date at job start Mon Mar 30 2020 03:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 N 1.46902 * 109.47158 * 185.76259 * 3 2 1 5 5 C 1.48062 * 111.00119 * 295.96673 * 4 3 2 6 6 H 1.09006 * 108.78919 * 205.13104 * 5 4 3 7 7 C 1.52996 * 108.78877 * 323.45762 * 5 4 3 8 8 C 1.50743 * 112.85269 * 84.29632 * 5 4 3 9 9 C 1.54506 * 108.94142 * 92.71209 * 8 5 4 10 10 N 1.40083 * 111.51311 * 283.97757 * 9 8 5 11 11 C 1.46897 * 111.00261 * 188.14679 * 10 9 8 12 12 C 1.47683 * 114.56662 * 61.45002 * 10 9 8 13 13 C 1.47680 * 111.05797 * 63.66794 * 4 3 2 14 14 H 1.09008 * 108.83028 * 313.46173 * 13 4 3 15 15 C 1.50700 * 109.03774 * 72.21682 * 13 4 3 16 16 H 1.07994 * 119.99845 * 2.50589 * 15 13 4 17 17 C 1.37879 * 120.00252 * 182.50098 * 15 13 4 18 18 N 1.31515 * 119.99789 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00215 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46983 * 59.99976 * 19 17 15 21 21 H 1.48500 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46893 * 300.00045 * 19 17 15 23 23 H 1.09001 * 109.47352 * 300.00033 * 1 2 3 24 24 H 1.09008 * 109.47092 * 60.00255 * 1 2 3 25 25 H 1.09004 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47352 * 239.99967 * 2 1 3 27 27 H 1.09008 * 109.47092 * 119.99745 * 2 1 3 28 28 H 1.08999 * 109.47477 * 65.76451 * 3 2 1 29 29 H 1.09003 * 109.47211 * 305.76438 * 3 2 1 30 30 H 1.09005 * 109.47259 * 181.64885 * 7 5 4 31 31 H 1.08996 * 109.47285 * 301.65392 * 7 5 4 32 32 H 1.09007 * 109.47301 * 61.65558 * 7 5 4 33 33 H 1.09004 * 109.55575 * 212.55009 * 8 5 4 34 34 H 1.09001 * 109.55987 * 332.87439 * 8 5 4 35 35 H 1.09000 * 109.07709 * 44.49766 * 9 8 5 36 36 H 1.09004 * 109.07771 * 163.45099 * 9 8 5 37 37 H 1.09004 * 109.47529 * 63.94884 * 11 10 9 38 38 H 1.09002 * 109.47604 * 183.95136 * 11 10 9 39 39 H 1.09006 * 109.47130 * 303.94957 * 11 10 9 40 40 H 1.08997 * 109.73803 * 38.34795 * 12 10 9 41 41 H 1.08998 * 109.73976 * 159.04823 * 12 10 9 42 42 H 0.97001 * 120.00088 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5024 1.4448 -0.1391 5 6 4.1473 0.7992 1.0269 6 1 5.1591 1.1914 1.1303 7 6 3.3526 1.1498 2.2864 8 6 4.2189 -0.7012 0.8999 9 6 5.5738 -1.0867 0.2652 10 7 5.5847 -0.8379 -1.1133 11 6 6.7977 -1.3831 -1.7371 12 6 5.3903 0.5786 -1.4831 13 6 3.9127 0.8760 -1.4387 14 1 3.3597 -0.0478 -1.6088 15 6 3.5767 1.8566 -2.5325 16 1 3.1466 2.8157 -2.2845 17 6 3.8184 1.5295 -3.8500 18 7 4.3427 0.3617 -4.1519 19 14 3.4026 2.7453 -5.2058 20 1 4.1726 3.9983 -5.0002 21 1 3.7552 2.1574 -6.5231 22 1 1.9489 3.0463 -5.1718 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.7634 1.9257 0.9371 29 1 1.5948 1.9853 -0.8339 30 1 3.8349 0.7038 3.1563 31 1 3.3189 2.2328 2.4050 32 1 2.3378 0.7625 2.1953 33 1 4.1361 -1.1553 1.8874 34 1 3.4055 -1.0529 0.2653 35 1 6.3665 -0.5068 0.7380 36 1 5.7590 -2.1470 0.4372 37 1 6.8013 -2.4686 -1.6372 38 1 6.8148 -1.1155 -2.7936 39 1 7.6774 -0.9699 -1.2435 40 1 5.9160 1.2194 -0.7752 41 1 5.7704 0.7518 -2.4898 42 1 4.5131 0.1317 -5.0787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220422859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:32 Heat of formation + Delta-G solvation = 6.154870 kcal Electronic energy + Delta-G solvation = -19459.994701 eV Core-core repulsion = 16860.873433 eV Total energy + Delta-G solvation = -2599.121268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02272 -37.73852 -35.46410 -33.98248 -32.72417 -30.35295 -29.18501 -27.24833 -26.37875 -25.29507 -23.39614 -22.42095 -21.26159 -19.88045 -18.13983 -17.42460 -16.78062 -16.11131 -15.99889 -15.79767 -15.52466 -14.85988 -14.39783 -14.12649 -13.87505 -13.74459 -13.29439 -13.15821 -13.01986 -12.75328 -12.68602 -12.53859 -12.49768 -12.33011 -12.25203 -11.98956 -11.76148 -11.62119 -11.48218 -11.11061 -10.93248 -10.86677 -10.35701 -8.85466 -8.59638 -7.97128 -6.10267 1.44318 1.44616 1.52070 2.47275 3.19579 3.41334 3.44849 3.97044 4.10256 4.19322 4.29803 4.30325 4.51914 4.52193 4.56641 4.64727 4.68670 4.74100 4.84014 4.85673 4.96164 4.98111 5.02663 5.05132 5.08833 5.17064 5.23996 5.27986 5.30251 5.36617 5.54731 5.56251 5.61716 5.80349 5.88824 6.36661 6.47350 6.59049 6.78888 6.98940 7.10468 7.57110 9.03484 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.011339 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.369568 B = 2468.732588 C = 3392.851797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.157 4.157 3 C 0.069 3.931 4 N -0.555 5.555 5 C 0.081 3.919 6 H 0.048 0.952 7 C -0.144 4.144 8 C -0.150 4.150 9 C 0.077 3.923 10 N -0.569 5.569 11 C 0.046 3.954 12 C 0.101 3.899 13 C 0.232 3.768 14 H -0.001 1.001 15 C -0.519 4.519 16 H 0.047 0.953 17 C 0.017 3.983 18 N -0.901 5.901 19 Si 0.947 3.053 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.069 0.931 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.007 0.993 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.020 0.980 40 H 0.000 1.000 41 H 0.069 0.931 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 -2.625 10.619 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.195 4.195 3 C -0.059 4.059 4 N -0.279 5.279 5 C -0.027 4.027 6 H 0.066 0.934 7 C -0.201 4.201 8 C -0.189 4.189 9 C -0.052 4.052 10 N -0.293 5.293 11 C -0.102 4.102 12 C -0.026 4.026 13 C 0.126 3.874 14 H 0.016 0.984 15 C -0.558 4.558 16 H 0.065 0.935 17 C -0.183 4.183 18 N -0.540 5.540 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.088 0.912 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.018 0.982 41 H 0.087 0.913 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.411 -2.485 10.298 10.687 hybrid contribution 0.467 0.201 -1.026 1.145 sum -0.944 -2.284 9.272 9.595 Atomic orbital electron populations 1.21661 0.94718 1.01642 1.01769 1.22322 0.97052 0.99145 1.01019 1.22073 0.87702 0.95194 1.00955 1.62239 1.07049 1.56467 1.02160 1.21454 0.97916 0.92104 0.91253 0.93382 1.22117 1.00533 1.01795 0.95689 1.22445 0.97753 0.97436 1.01263 1.21048 0.96464 1.00176 0.87546 1.58916 1.38801 1.19520 1.12039 1.22164 0.89375 0.99753 0.98875 1.21738 0.98354 0.83990 0.98562 1.18737 0.91345 0.92737 0.84607 0.98397 1.21405 1.40993 1.02075 0.91334 0.93513 1.25566 0.95645 0.96735 1.00305 1.70141 1.44096 1.21471 1.18262 0.85798 0.78519 0.79574 0.78763 1.20160 1.21151 1.20198 0.91164 0.93971 0.92459 0.94684 0.90639 0.89772 0.93564 0.90815 0.92541 0.91435 0.89086 0.91275 0.97509 0.90784 0.90985 0.93200 0.96142 0.98152 0.91259 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.16 -5.44 3.93 30.59 0.12 -5.32 16 3 C 0.07 2.61 4.65 86.30 0.40 3.01 16 4 N -0.56 -23.70 4.58 -853.79 -3.91 -27.61 16 5 C 0.08 2.84 2.24 43.96 0.10 2.93 16 6 H 0.05 1.82 6.52 -2.38 -0.02 1.81 16 7 C -0.14 -3.84 7.65 71.98 0.55 -3.29 16 8 C -0.15 -4.98 4.21 30.37 0.13 -4.85 16 9 C 0.08 2.72 4.94 88.05 0.44 3.16 16 10 N -0.57 -24.28 4.23 -938.61 -3.97 -28.25 16 11 C 0.05 1.73 9.52 127.69 1.22 2.95 16 12 C 0.10 4.95 4.46 85.43 0.38 5.33 16 13 C 0.23 11.72 1.20 43.30 0.05 11.77 16 14 H 0.00 -0.08 4.96 -2.38 -0.01 -0.09 16 15 C -0.52 -28.93 7.89 25.60 0.20 -28.73 16 16 H 0.05 2.65 7.60 -2.91 -0.02 2.63 16 17 C 0.02 0.95 5.02 84.65 0.43 1.37 16 18 N -0.90 -51.47 11.61 21.45 0.25 -51.23 16 19 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 24 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.03 1.52 5.60 -2.39 -0.01 1.51 16 27 H 0.08 2.35 4.67 -2.38 -0.01 2.34 16 28 H 0.08 2.70 5.98 -2.39 -0.01 2.69 16 29 H 0.05 2.00 7.26 -2.39 -0.02 1.98 16 30 H 0.07 1.60 8.04 -2.38 -0.02 1.58 16 31 H 0.06 1.51 8.04 -2.39 -0.02 1.49 16 32 H 0.07 1.71 5.01 -2.38 -0.01 1.70 16 33 H 0.09 2.39 7.66 -2.38 -0.02 2.38 16 34 H 0.07 2.62 4.12 -2.39 -0.01 2.61 16 35 H 0.01 0.25 7.59 -2.39 -0.02 0.23 16 36 H 0.07 2.30 8.01 -2.38 -0.02 2.28 16 37 H 0.07 2.34 8.12 -2.38 -0.02 2.33 16 38 H 0.05 2.08 7.73 -2.39 -0.02 2.06 16 39 H 0.02 0.70 8.13 -2.38 -0.02 0.68 16 40 H 0.00 0.02 6.77 -2.39 -0.02 0.00 16 41 H 0.07 3.84 5.39 -2.39 -0.01 3.83 16 42 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -60.49 296.84 0.10 -60.38 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.98 Total: 15.25 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.72 Total: -14.94 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -7.63 Total: -107.09 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.49 0.10 -60.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220422859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.539 kcal (2) G-P(sol) polarization free energy of solvation -60.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds