Wall clock time and date at job start Mon Mar 30 2020 03:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46740 * 2 1 4 4 N 1.46904 * 109.47178 * 179.97438 * 3 2 1 5 5 C 1.44641 * 111.04463 * 62.36874 * 4 3 2 6 6 C 1.54208 * 108.83140 * 220.43001 * 5 4 3 7 7 H 1.08999 * 108.95807 * 41.70587 * 6 5 4 8 8 C 1.50698 * 108.96125 * 160.45238 * 6 5 4 9 9 H 1.08005 * 119.99819 * 1.24376 * 8 6 5 10 10 C 1.37875 * 120.00046 * 181.23717 * 8 6 5 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 N 1.40007 * 112.00481 * 281.08295 * 6 5 4 17 17 C 1.47899 * 114.07704 * 61.84598 * 16 6 5 18 18 C 1.50801 * 108.49507 * 280.05491 * 17 16 6 19 19 C 1.48062 * 111.00124 * 189.99998 * 4 3 2 20 20 C 1.53000 * 108.88548 * 71.42384 * 19 4 3 21 21 C 1.52993 * 108.88494 * 312.96272 * 19 4 3 22 22 H 1.09000 * 109.47020 * 60.00259 * 1 2 3 23 23 H 1.09004 * 109.47163 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47688 * 299.99727 * 1 2 3 25 25 H 1.08998 * 109.47195 * 239.99684 * 2 1 3 26 26 H 1.09000 * 109.47020 * 119.99741 * 2 1 3 27 27 H 1.08998 * 109.47535 * 59.99892 * 3 2 1 28 28 H 1.09000 * 109.47152 * 299.99659 * 3 2 1 29 29 H 1.09003 * 109.65153 * 100.59017 * 5 4 3 30 30 H 1.09003 * 109.52534 * 340.20029 * 5 4 3 31 31 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 32 32 H 1.00907 * 110.99988 * 295.54989 * 16 6 5 33 33 H 1.09007 * 109.63257 * 39.75810 * 17 16 6 34 34 H 1.09002 * 109.63393 * 160.35254 * 17 16 6 35 35 H 1.08994 * 108.95639 * 213.22966 * 18 17 16 36 36 H 1.09000 * 108.95399 * 331.97051 * 18 17 16 37 37 H 1.09000 * 109.47386 * 182.94484 * 20 19 4 38 38 H 1.09010 * 109.46951 * 302.94792 * 20 19 4 39 39 H 1.09007 * 109.47182 * 62.94099 * 20 19 4 40 40 H 1.09000 * 109.47002 * 297.05123 * 21 19 4 41 41 H 1.08998 * 109.47247 * 57.05235 * 21 19 4 42 42 H 1.09006 * 109.47269 * 177.05819 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0289 0.8164 -1.1950 6 6 5.2444 -0.0524 -0.8135 7 1 5.0230 -0.5844 0.1117 8 6 5.4908 -1.0577 -1.9089 9 1 4.8646 -1.0620 -2.7888 10 6 6.5158 -1.9719 -1.7877 11 7 7.2781 -1.9670 -0.7161 12 14 6.8216 -3.2175 -3.1457 13 1 7.9718 -4.0810 -2.7757 14 1 7.1250 -2.5044 -4.4125 15 1 5.6111 -4.0579 -3.3285 16 7 6.4013 0.7149 -0.6315 17 6 6.3027 1.7047 0.4630 18 6 5.5461 2.9061 -0.0453 19 6 4.0394 2.8040 0.2407 20 6 3.7857 3.1840 1.7009 21 6 3.2961 3.7912 -0.6614 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9564 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 4.3368 1.5831 -1.9061 30 1 3.2578 0.1893 -1.6426 31 1 7.1195 -1.3199 -0.0111 32 1 6.6817 1.1565 -1.4943 33 1 5.7696 1.2661 1.3066 34 1 7.3025 2.0066 0.7749 35 1 5.9381 3.8015 0.4371 36 1 5.6961 2.9896 -1.1217 37 1 4.1255 4.2049 1.8750 38 1 2.7189 3.1147 1.9143 39 1 4.3317 2.5029 2.3537 40 1 3.4905 3.5465 -1.7056 41 1 2.2257 3.7266 -0.4663 42 1 3.6427 4.8039 -0.4549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220423194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:58 Heat of formation + Delta-G solvation = 1.085891 kcal Electronic energy + Delta-G solvation = -19133.668085 eV Core-core repulsion = 16534.327009 eV Total energy + Delta-G solvation = -2599.341076 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62699 -35.75169 -34.54870 -32.13502 -31.49697 -28.33371 -27.23547 -27.01961 -24.87034 -23.46877 -22.09310 -20.76046 -20.18080 -18.03799 -16.97297 -15.82088 -15.22954 -14.77466 -14.25398 -13.86410 -13.68502 -13.51019 -13.27176 -12.85368 -12.68256 -12.49151 -12.10596 -11.83084 -11.68485 -11.46538 -11.36277 -11.19893 -10.94244 -10.76280 -10.67007 -10.49060 -10.23885 -10.14284 -10.01280 -9.95416 -9.72914 -8.33732 -8.16939 -7.66858 -6.86503 -6.01778 -3.86811 3.53024 3.54577 3.73250 4.25581 4.69645 4.96800 5.12543 5.22822 5.30162 5.36503 5.45082 5.58547 5.64438 5.67782 5.74816 5.80208 5.86432 5.93182 5.97673 5.98710 6.06156 6.06925 6.13587 6.23657 6.30591 6.32677 6.41291 6.48794 6.56703 6.62797 6.71024 6.84671 6.93611 7.37045 7.71900 7.91045 8.18608 8.55238 8.92714 9.10011 9.20515 9.98180 11.35617 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022186 B = 0.008680 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.736409 B = 3224.946281 C = 4068.502352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.061 3.939 4 N -0.535 5.535 5 C 0.034 3.966 6 C 0.227 3.773 7 H 0.032 0.968 8 C -0.617 4.617 9 H 0.040 0.960 10 C 0.038 3.962 11 N -0.894 5.894 12 Si 1.060 2.940 13 H -0.285 1.285 14 H -0.292 1.292 15 H -0.292 1.292 16 N -0.670 5.670 17 C 0.064 3.936 18 C -0.138 4.138 19 C 0.113 3.887 20 C -0.134 4.134 21 C -0.176 4.176 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.020 0.980 30 H 0.064 0.936 31 H 0.292 0.708 32 H 0.326 0.674 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 9.707 2.436 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.067 4.067 4 N -0.259 5.259 5 C -0.096 4.096 6 C 0.116 3.884 7 H 0.050 0.950 8 C -0.657 4.657 9 H 0.059 0.941 10 C -0.172 4.172 11 N -0.529 5.529 12 Si 0.890 3.110 13 H -0.210 1.210 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.300 5.300 17 C -0.065 4.065 18 C -0.177 4.177 19 C 0.024 3.976 20 C -0.191 4.191 21 C -0.235 4.235 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.543 7.705 2.788 11.138 hybrid contribution -1.956 2.600 -0.829 3.357 sum -9.500 10.305 1.959 14.152 Atomic orbital electron populations 1.21722 0.96372 1.01371 1.01018 1.21622 0.94391 0.96807 1.03513 1.22111 0.88603 0.96626 0.99343 1.61137 1.05701 1.18469 1.40590 1.23078 1.00956 0.96682 0.88872 1.18152 0.83097 0.89942 0.97210 0.95037 1.21869 1.19759 1.18224 1.05817 0.94127 1.25509 0.92948 0.98210 1.00534 1.70525 1.37464 1.37091 1.07815 0.83706 0.76002 0.76153 0.75137 1.21030 1.21871 1.21886 1.58508 1.37753 1.25738 1.07986 1.21700 0.97394 0.90613 0.96797 1.22257 0.93909 1.00584 1.00987 1.21288 0.94349 0.87272 0.94659 1.21867 1.01217 1.00227 0.95810 1.22528 1.00769 0.99832 1.00395 0.93313 0.92751 0.93216 0.91116 0.91258 0.91790 0.95830 0.96179 0.91780 0.89532 0.85410 0.91074 0.92831 0.92351 0.92646 0.93058 0.93133 0.91845 0.93044 0.92551 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.13 -1.95 5.84 -26.73 -0.16 -2.10 16 3 C 0.06 0.94 3.61 -3.82 -0.01 0.93 16 4 N -0.53 -9.50 3.59 -218.75 -0.79 -10.29 16 5 C 0.03 0.71 4.33 -4.40 -0.02 0.69 16 6 C 0.23 5.60 1.69 -71.79 -0.12 5.48 16 7 H 0.03 0.89 7.92 -51.93 -0.41 0.48 16 8 C -0.62 -17.20 8.51 -34.44 -0.29 -17.49 16 9 H 0.04 1.13 7.70 -52.48 -0.40 0.73 16 10 C 0.04 1.08 5.37 -17.82 -0.10 0.99 16 11 N -0.89 -27.20 13.49 55.43 0.75 -26.46 16 12 Si 1.06 25.47 29.90 -169.99 -5.08 20.39 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 N -0.67 -15.59 4.46 -112.24 -0.50 -16.09 16 17 C 0.06 1.24 6.23 -4.38 -0.03 1.21 16 18 C -0.14 -2.25 4.13 -27.47 -0.11 -2.36 16 19 C 0.11 1.76 0.35 -130.60 -0.05 1.72 16 20 C -0.13 -1.82 8.31 37.16 0.31 -1.51 16 21 C -0.18 -2.47 7.54 37.15 0.28 -2.19 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.24 6.17 -51.93 -0.32 0.92 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.91 6.31 -51.93 -0.33 0.58 16 28 H 0.02 0.36 6.80 -51.93 -0.35 0.01 16 29 H 0.02 0.43 6.09 -51.93 -0.32 0.11 16 30 H 0.06 1.39 5.42 -51.93 -0.28 1.11 16 31 H 0.29 8.91 6.34 -40.82 -0.26 8.65 16 32 H 0.33 7.62 8.05 -39.29 -0.32 7.31 16 33 H 0.07 1.45 6.76 -51.93 -0.35 1.10 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 36 H 0.05 0.96 6.59 -51.93 -0.34 0.62 16 37 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 38 H 0.05 0.65 6.45 -51.92 -0.33 0.32 16 39 H 0.06 0.93 7.34 -51.92 -0.38 0.55 16 40 H 0.05 0.78 7.30 -51.93 -0.38 0.40 16 41 H 0.06 0.75 6.31 -51.93 -0.33 0.42 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -28.99 305.06 -8.22 -37.21 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.27 Total: 6.72 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 0.07 Total: -16.08 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.54 Total: -52.83 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.99 -8.22 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.296 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds