Wall clock time and date at job start Mon Mar 30 2020 03:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46740 * 2 1 4 4 N 1.46904 * 109.47178 * 179.97438 * 3 2 1 5 5 C 1.44641 * 111.04463 * 62.36874 * 4 3 2 6 6 C 1.54208 * 108.83140 * 220.43001 * 5 4 3 7 7 H 1.08999 * 108.95807 * 41.70587 * 6 5 4 8 8 C 1.50698 * 108.96125 * 160.45238 * 6 5 4 9 9 H 1.08005 * 119.99819 * 1.24376 * 8 6 5 10 10 C 1.37875 * 120.00046 * 181.23717 * 8 6 5 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 N 1.40007 * 112.00481 * 281.08295 * 6 5 4 17 17 C 1.47899 * 114.07704 * 61.84598 * 16 6 5 18 18 C 1.50801 * 108.49507 * 280.05491 * 17 16 6 19 19 C 1.48062 * 111.00124 * 189.99998 * 4 3 2 20 20 C 1.53000 * 108.88548 * 71.42384 * 19 4 3 21 21 C 1.52993 * 108.88494 * 312.96272 * 19 4 3 22 22 H 1.09000 * 109.47020 * 60.00259 * 1 2 3 23 23 H 1.09004 * 109.47163 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47688 * 299.99727 * 1 2 3 25 25 H 1.08998 * 109.47195 * 239.99684 * 2 1 3 26 26 H 1.09000 * 109.47020 * 119.99741 * 2 1 3 27 27 H 1.08998 * 109.47535 * 59.99892 * 3 2 1 28 28 H 1.09000 * 109.47152 * 299.99659 * 3 2 1 29 29 H 1.09003 * 109.65153 * 100.59017 * 5 4 3 30 30 H 1.09003 * 109.52534 * 340.20029 * 5 4 3 31 31 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 32 32 H 1.00907 * 110.99988 * 295.54989 * 16 6 5 33 33 H 1.09007 * 109.63257 * 39.75810 * 17 16 6 34 34 H 1.09002 * 109.63393 * 160.35254 * 17 16 6 35 35 H 1.08994 * 108.95639 * 213.22966 * 18 17 16 36 36 H 1.09000 * 108.95399 * 331.97051 * 18 17 16 37 37 H 1.09000 * 109.47386 * 182.94484 * 20 19 4 38 38 H 1.09010 * 109.46951 * 302.94792 * 20 19 4 39 39 H 1.09007 * 109.47182 * 62.94099 * 20 19 4 40 40 H 1.09000 * 109.47002 * 297.05123 * 21 19 4 41 41 H 1.08998 * 109.47247 * 57.05235 * 21 19 4 42 42 H 1.09006 * 109.47269 * 177.05819 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0289 0.8164 -1.1950 6 6 5.2444 -0.0524 -0.8135 7 1 5.0230 -0.5844 0.1117 8 6 5.4908 -1.0577 -1.9089 9 1 4.8646 -1.0620 -2.7888 10 6 6.5158 -1.9719 -1.7877 11 7 7.2781 -1.9670 -0.7161 12 14 6.8216 -3.2175 -3.1457 13 1 7.9718 -4.0810 -2.7757 14 1 7.1250 -2.5044 -4.4125 15 1 5.6111 -4.0579 -3.3285 16 7 6.4013 0.7149 -0.6315 17 6 6.3027 1.7047 0.4630 18 6 5.5461 2.9061 -0.0453 19 6 4.0394 2.8040 0.2407 20 6 3.7857 3.1840 1.7009 21 6 3.2961 3.7912 -0.6614 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9564 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 4.3368 1.5831 -1.9061 30 1 3.2578 0.1893 -1.6426 31 1 7.1195 -1.3199 -0.0111 32 1 6.6817 1.1565 -1.4943 33 1 5.7696 1.2661 1.3066 34 1 7.3025 2.0066 0.7749 35 1 5.9381 3.8015 0.4371 36 1 5.6961 2.9896 -1.1217 37 1 4.1255 4.2049 1.8750 38 1 2.7189 3.1147 1.9143 39 1 4.3317 2.5029 2.3537 40 1 3.4905 3.5465 -1.7056 41 1 2.2257 3.7266 -0.4663 42 1 3.6427 4.8039 -0.4549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220423194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:58 Heat of formation + Delta-G solvation = -17.597090 kcal Electronic energy + Delta-G solvation = -19134.478240 eV Core-core repulsion = 16534.327009 eV Total energy + Delta-G solvation = -2600.151231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08744 -37.44037 -35.93367 -33.96705 -33.03350 -29.90665 -28.66166 -28.23439 -26.50284 -25.14494 -23.60988 -22.32066 -21.78003 -19.40806 -19.03130 -17.21026 -16.77314 -16.12245 -15.76537 -15.56742 -15.42510 -15.03518 -14.67010 -14.25519 -14.07485 -13.73858 -13.61465 -13.24015 -13.15380 -12.76900 -12.64057 -12.57658 -12.46519 -12.36565 -12.04863 -11.95245 -11.91589 -11.84650 -11.64173 -11.33369 -11.29250 -10.44731 -10.33503 -9.12960 -8.71982 -8.19777 -6.16243 1.56533 1.64507 1.83254 2.65937 2.95298 3.36409 3.70610 3.90680 3.92603 4.01099 4.14816 4.17150 4.34208 4.41568 4.49825 4.54161 4.57892 4.63915 4.67990 4.73140 4.82124 4.84201 4.93609 4.96464 4.97189 5.00882 5.09632 5.16990 5.20110 5.24652 5.29335 5.42033 5.43668 5.51096 6.03192 6.31249 6.40344 6.43123 6.84816 7.09153 7.17703 7.78236 9.05580 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022186 B = 0.008680 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.736409 B = 3224.946281 C = 4068.502352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.065 3.935 4 N -0.550 5.550 5 C 0.056 3.944 6 C 0.238 3.762 7 H -0.012 1.012 8 C -0.630 4.630 9 H 0.034 0.966 10 C -0.011 4.011 11 N -0.922 5.922 12 Si 1.108 2.892 13 H -0.287 1.287 14 H -0.275 1.275 15 H -0.278 1.278 16 N -0.689 5.689 17 C 0.071 3.929 18 C -0.131 4.131 19 C 0.106 3.894 20 C -0.128 4.128 21 C -0.168 4.168 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.030 0.970 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.279 0.721 32 H 0.324 0.676 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.034 0.966 41 H 0.066 0.934 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.218 11.498 2.371 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.062 4.062 4 N -0.274 5.274 5 C -0.074 4.074 6 C 0.127 3.873 7 H 0.006 0.994 8 C -0.669 4.669 9 H 0.052 0.948 10 C -0.215 4.215 11 N -0.557 5.557 12 Si 0.931 3.069 13 H -0.213 1.213 14 H -0.201 1.201 15 H -0.204 1.204 16 N -0.319 5.319 17 C -0.058 4.058 18 C -0.171 4.171 19 C 0.018 3.982 20 C -0.185 4.185 21 C -0.227 4.227 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.825 9.524 2.732 13.268 hybrid contribution -1.576 2.071 -0.748 2.708 sum -10.401 11.595 1.985 15.702 Atomic orbital electron populations 1.21655 0.93477 1.02168 1.02326 1.21590 0.96917 0.96589 1.01130 1.22152 0.86917 0.96626 1.00541 1.61030 1.07361 1.20380 1.38651 1.22578 0.98972 0.95948 0.89933 1.17829 0.85226 0.90216 0.94064 0.99446 1.22267 1.19220 1.19202 1.06178 0.94799 1.26879 0.92779 1.00038 1.01769 1.70645 1.38865 1.37616 1.08622 0.83071 0.76229 0.74351 0.73204 1.21290 1.20091 1.20390 1.58224 1.37554 1.27348 1.08787 1.21649 0.98356 0.90869 0.94904 1.22150 0.94466 1.00094 1.00343 1.21460 0.93804 0.86372 0.96593 1.21826 1.01809 1.01233 0.93635 1.22436 1.01187 1.00312 0.98767 0.92383 0.92321 0.91422 0.94061 0.93086 0.89645 0.95166 0.96590 0.93132 0.90953 0.85656 0.92591 0.91880 0.89311 0.93729 0.90517 0.92107 0.93355 0.94695 0.91479 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.12 -3.84 5.84 30.59 0.18 -3.66 16 3 C 0.06 1.91 3.61 86.30 0.31 2.22 16 4 N -0.55 -19.31 3.59 -846.00 -3.04 -22.35 16 5 C 0.06 2.41 4.33 87.14 0.38 2.79 16 6 C 0.24 12.23 1.69 45.82 0.08 12.31 16 7 H -0.01 -0.73 7.92 -2.39 -0.02 -0.75 16 8 C -0.63 -36.17 8.51 25.60 0.22 -35.95 16 9 H 0.03 1.94 7.70 -2.91 -0.02 1.92 16 10 C -0.01 -0.65 5.37 84.65 0.45 -0.19 16 11 N -0.92 -57.73 13.49 21.45 0.29 -57.44 16 12 Si 1.11 51.87 29.90 68.60 2.05 53.92 16 13 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 14 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 16 N -0.69 -33.02 4.46 -509.01 -2.27 -35.29 16 17 C 0.07 2.73 6.23 85.40 0.53 3.26 16 18 C -0.13 -4.07 4.13 30.12 0.12 -3.95 16 19 C 0.11 3.08 0.35 3.54 0.00 3.08 16 20 C -0.13 -3.09 8.31 71.98 0.60 -2.49 16 21 C -0.17 -4.18 7.54 71.98 0.54 -3.63 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 1.50 6.17 -2.39 -0.01 1.48 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 2.17 6.31 -2.39 -0.02 2.16 16 28 H 0.03 0.86 6.80 -2.39 -0.02 0.85 16 29 H 0.02 0.68 6.09 -2.39 -0.01 0.67 16 30 H 0.05 2.27 5.42 -2.39 -0.01 2.25 16 31 H 0.28 17.76 6.34 -92.71 -0.59 17.17 16 32 H 0.32 15.54 8.05 -89.69 -0.72 14.82 16 33 H 0.06 2.32 6.76 -2.38 -0.02 2.30 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.09 2.24 7.95 -2.39 -0.02 2.22 16 36 H 0.04 1.49 6.59 -2.39 -0.02 1.48 16 37 H 0.08 1.49 8.11 -2.39 -0.02 1.47 16 38 H 0.06 1.35 6.45 -2.38 -0.02 1.33 16 39 H 0.05 1.32 7.34 -2.38 -0.02 1.30 16 40 H 0.03 0.98 7.30 -2.39 -0.02 0.96 16 41 H 0.07 1.53 6.31 -2.39 -0.02 1.51 16 42 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -64.74 305.06 1.61 -63.13 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.44 Total: 26.68 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 4.13 Total: -28.65 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -5.02 Total: -115.08 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.92 kcal Total: -64.74 1.61 -63.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.531 kcal (2) G-P(sol) polarization free energy of solvation -64.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds