Wall clock time and date at job start Mon Mar 30 2020 03:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 N 1.46896 * 109.47059 * 240.00217 * 2 1 3 5 5 C 1.48084 * 111.00341 * 50.38652 * 4 2 1 6 6 C 1.46094 * 112.15220 * 156.49126 * 5 4 2 7 7 H 1.08993 * 108.94466 * 300.08930 * 6 5 4 8 8 C 1.50703 * 108.93934 * 181.38167 * 6 5 4 9 9 H 1.07996 * 120.00550 * 0.02562 * 8 6 5 10 10 C 1.37875 * 119.99832 * 180.02562 * 8 6 5 11 11 N 1.31515 * 119.99862 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 120.00320 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46682 * 59.99880 * 12 10 8 14 14 H 1.48493 * 109.47582 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46804 * 300.00384 * 12 10 8 16 16 N 1.48079 * 112.16278 * 60.69387 * 6 5 4 17 17 C 1.44179 * 109.89150 * 279.64222 * 16 6 5 18 18 C 1.54313 * 112.60936 * 94.34976 * 17 16 6 19 19 C 1.44182 * 110.99675 * 287.84547 * 4 2 1 20 20 C 1.53001 * 108.85453 * 338.32227 * 19 4 2 21 21 C 1.52998 * 108.85715 * 96.70887 * 19 4 2 22 22 H 1.09004 * 109.46845 * 64.94476 * 1 2 3 23 23 H 1.08997 * 109.47129 * 184.95000 * 1 2 3 24 24 H 1.08997 * 109.47019 * 304.95027 * 1 2 3 25 25 H 1.08997 * 109.46880 * 120.00043 * 2 1 3 26 26 H 1.09000 * 109.47178 * 65.59386 * 3 2 1 27 27 H 1.09002 * 109.46435 * 185.59107 * 3 2 1 28 28 H 1.08992 * 109.46971 * 305.58932 * 3 2 1 29 29 H 1.09001 * 108.94502 * 277.18666 * 5 4 2 30 30 H 1.09002 * 108.94317 * 35.80517 * 5 4 2 31 31 H 0.97002 * 120.00064 * 179.97438 * 11 10 8 32 32 H 1.00906 * 110.99540 * 42.81137 * 16 6 5 33 33 H 1.09002 * 108.85150 * 215.15171 * 17 16 6 34 34 H 1.08993 * 108.85773 * 333.63903 * 17 16 6 35 35 H 1.08999 * 109.02997 * 79.49031 * 18 17 16 36 36 H 1.09000 * 109.02844 * 198.41499 * 18 17 16 37 37 H 1.08997 * 109.47099 * 64.68569 * 20 19 4 38 38 H 1.09004 * 109.47024 * 184.68118 * 20 19 4 39 39 H 1.08995 * 109.47237 * 304.68311 * 20 19 4 40 40 H 1.08997 * 109.47017 * 52.29725 * 21 19 4 41 41 H 1.08993 * 109.47500 * 172.29879 * 21 19 4 42 42 H 1.09002 * 109.46733 * 292.30496 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 1.3656 -0.1672 -2.4197 6 6 2.1677 -0.3999 -3.6184 7 1 3.1307 0.0970 -3.5017 8 6 1.4538 0.1905 -4.8070 9 1 0.5032 0.6858 -4.6747 10 6 2.0142 0.0985 -6.0633 11 7 3.1715 -0.5050 -6.2245 12 14 1.1290 0.8297 -7.5368 13 1 0.9475 2.2891 -7.3310 14 1 1.9342 0.5986 -8.7629 15 1 -0.1989 0.1822 -7.6879 16 7 2.3993 -1.8417 -3.8643 17 6 3.4707 -2.3166 -3.0243 18 6 2.9610 -2.9351 -1.7056 19 6 1.8030 -2.1144 -1.0997 20 6 1.6507 -2.4891 0.3759 21 6 0.5083 -2.4699 -1.8334 22 1 -0.3633 0.4352 -0.9310 23 1 -0.3633 -1.0238 0.0887 24 1 -0.3633 0.5887 0.8423 25 1 1.8933 -0.5138 0.8900 26 1 1.7608 1.9267 0.9358 27 1 3.1254 1.4441 -0.1001 28 1 1.5973 1.9844 -0.8356 29 1 0.3984 -0.6551 -2.5407 30 1 1.2070 0.9049 -2.3027 31 1 3.5656 -0.5701 -7.1084 32 1 1.5563 -2.3746 -3.7111 33 1 4.0387 -3.0699 -3.5703 34 1 4.1300 -1.4815 -2.7884 35 1 2.6137 -3.9499 -1.8999 36 1 3.7820 -2.9715 -0.9895 37 1 0.7523 -2.0213 0.7786 38 1 1.5694 -3.5721 0.4692 39 1 2.5216 -2.1408 0.9309 40 1 0.5392 -2.0615 -2.8435 41 1 0.4045 -3.5538 -1.8828 42 1 -0.3412 -2.0476 -1.2966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220423284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:01 Heat of formation + Delta-G solvation = 55.775854 kcal Electronic energy + Delta-G solvation = -19639.465380 eV Core-core repulsion = 17042.495839 eV Total energy + Delta-G solvation = -2596.969541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51808 -35.72316 -33.88065 -31.79844 -30.97215 -28.49504 -27.37888 -26.88444 -26.18475 -24.08600 -21.81924 -20.46064 -19.89834 -17.43343 -16.62291 -16.36207 -14.98651 -14.50860 -14.40870 -14.11292 -13.62469 -13.13230 -13.02491 -12.72023 -12.19759 -12.10836 -11.99224 -11.84413 -11.78001 -11.42138 -11.16643 -11.12507 -10.92867 -10.76948 -10.72307 -10.52213 -10.14420 -10.05784 -9.92200 -9.44085 -9.38481 -8.70765 -8.26031 -7.56930 -6.58481 -5.73939 -3.88833 3.40580 3.45657 3.47454 4.36759 4.61410 5.09753 5.19632 5.23738 5.35000 5.43051 5.47873 5.64387 5.77064 5.78508 5.85508 5.88047 5.99700 6.01356 6.08040 6.08442 6.12539 6.20242 6.25489 6.31160 6.40847 6.55421 6.58317 6.60475 6.66894 6.77942 6.91064 7.12813 7.25067 7.52655 7.82399 7.89580 8.03999 8.42762 8.76823 9.09256 9.29746 9.79282 11.29895 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028259 B = 0.008728 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.580511 B = 3207.132078 C = 3660.452403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.068 3.932 3 C -0.141 4.141 4 N -0.518 5.518 5 C 0.022 3.978 6 C 0.217 3.783 7 H 0.036 0.964 8 C -0.536 4.536 9 H 0.048 0.952 10 C 0.088 3.912 11 N -0.843 5.843 12 Si 0.878 3.122 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.280 1.280 16 N -0.641 5.641 17 C 0.074 3.926 18 C -0.134 4.134 19 C 0.113 3.887 20 C -0.158 4.158 21 C -0.209 4.209 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.253 0.747 32 H 0.313 0.687 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.050 0.950 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 -2.263 12.317 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.041 4.041 3 C -0.199 4.199 4 N -0.241 5.241 5 C -0.105 4.105 6 C 0.109 3.891 7 H 0.054 0.946 8 C -0.576 4.576 9 H 0.066 0.934 10 C -0.119 4.119 11 N -0.477 5.477 12 Si 0.706 3.294 13 H -0.206 1.206 14 H -0.215 1.215 15 H -0.205 1.205 16 N -0.273 5.273 17 C -0.058 4.058 18 C -0.174 4.174 19 C 0.022 3.978 20 C -0.216 4.216 21 C -0.267 4.267 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.187 -2.138 11.574 11.972 hybrid contribution -1.802 0.123 0.137 1.811 sum -3.989 -2.015 11.711 12.535 Atomic orbital electron populations 1.22805 0.98308 1.01722 1.02211 1.21892 0.92272 0.95391 0.94520 1.21815 1.01944 0.95333 1.00758 1.62133 1.57659 1.02002 1.02342 1.22311 0.98275 0.99425 0.90525 1.18089 0.95831 0.85792 0.89361 0.94559 1.20893 1.06484 1.37833 0.92371 0.93361 1.24880 0.94556 0.94254 0.98200 1.70095 1.16149 1.39725 1.21778 0.86933 0.79899 0.79553 0.82982 1.20595 1.21487 1.20538 1.61293 1.07919 1.04763 1.53314 1.21604 0.96560 0.98604 0.89000 1.22827 0.97073 0.97698 0.99849 1.20664 0.93995 0.89147 0.93969 1.22446 1.01771 1.00883 0.96460 1.23331 0.97919 1.01287 1.04153 0.91845 0.92117 0.93120 0.89872 0.93282 0.92013 0.92439 0.93384 0.91992 0.93669 0.86419 0.93993 0.92407 0.93064 0.92885 0.91974 0.93078 0.92189 0.87937 0.93123 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 7.51 37.16 0.28 -2.33 16 2 C 0.07 0.99 2.40 -67.71 -0.16 0.83 16 3 C -0.14 -2.01 9.13 37.16 0.34 -1.67 16 4 N -0.52 -9.03 4.19 -215.23 -0.90 -9.93 16 5 C 0.02 0.45 2.47 -6.45 -0.02 0.43 16 6 C 0.22 5.33 1.95 -71.49 -0.14 5.19 16 7 H 0.04 1.02 7.36 -51.93 -0.38 0.64 16 8 C -0.54 -14.63 8.70 -34.44 -0.30 -14.93 16 9 H 0.05 1.30 7.72 -52.49 -0.40 0.89 16 10 C 0.09 2.46 5.37 -17.82 -0.10 2.36 16 11 N -0.84 -24.63 12.62 55.43 0.70 -23.93 16 12 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 N -0.64 -15.14 5.57 -111.83 -0.62 -15.77 16 17 C 0.07 1.56 6.11 -4.59 -0.03 1.53 16 18 C -0.13 -2.28 5.16 -25.35 -0.13 -2.41 16 19 C 0.11 1.82 0.68 -132.36 -0.09 1.73 16 20 C -0.16 -2.10 6.82 37.16 0.25 -1.85 16 21 C -0.21 -3.39 6.16 37.16 0.23 -3.16 16 22 H 0.06 0.96 6.33 -51.93 -0.33 0.63 16 23 H 0.06 0.80 4.06 -51.93 -0.21 0.59 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.13 5.26 -51.93 -0.27 0.86 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.89 6.59 -51.93 -0.34 0.55 16 29 H 0.05 0.97 4.14 -51.93 -0.21 0.76 16 30 H 0.06 1.29 5.79 -51.93 -0.30 0.99 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 32 H 0.31 6.99 4.90 -39.29 -0.19 6.80 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.32 7.16 -51.93 -0.37 0.95 16 35 H 0.05 0.82 7.79 -51.93 -0.40 0.42 16 36 H 0.05 0.85 7.98 -51.93 -0.41 0.44 16 37 H 0.06 0.78 4.69 -51.93 -0.24 0.53 16 38 H 0.05 0.63 8.13 -51.93 -0.42 0.20 16 39 H 0.06 0.78 7.13 -51.93 -0.37 0.41 16 40 H 0.10 1.97 2.93 -51.93 -0.15 1.82 16 41 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 42 H 0.05 0.81 5.35 -51.93 -0.28 0.53 16 LS Contribution 287.75 15.07 4.34 4.34 Total: -1.00 -28.19 287.75 -7.91 -36.10 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.54 Total: 7.10 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 0.14 Total: -14.27 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.83 Total: -49.63 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.19 -7.91 -36.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.877 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds