Wall clock time and date at job start Mon Mar 30 2020 03:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47672 * 2 1 4 4 N 1.46902 * 109.47053 * 119.99998 * 2 1 3 5 5 C 1.48197 * 110.99968 * 294.99148 * 4 2 1 6 6 C 1.53927 * 112.77709 * 191.68570 * 5 4 2 7 7 H 1.09000 * 108.86805 * 79.16970 * 6 5 4 8 8 C 1.50701 * 108.86736 * 197.68772 * 6 5 4 9 9 H 1.08002 * 119.99935 * 0.02562 * 8 6 5 10 10 C 1.37878 * 120.00142 * 179.97438 * 8 6 5 11 11 N 1.31518 * 119.99708 * 0.02562 * 10 8 6 12 12 Si 1.86795 * 119.99842 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47493 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47014 * 120.00725 * 12 10 8 15 15 H 1.48500 * 109.47052 * 240.00072 * 12 10 8 16 16 N 1.44329 * 112.47403 * 318.37385 * 6 5 4 17 17 C 1.48105 * 109.94450 * 94.01483 * 16 6 5 18 18 C 1.46145 * 112.11500 * 279.59652 * 17 16 6 19 19 C 1.44250 * 111.00117 * 166.75444 * 4 2 1 20 20 C 1.52999 * 109.61040 * 100.09993 * 19 4 2 21 21 C 1.52995 * 109.61156 * 339.59170 * 19 4 2 22 22 H 1.08994 * 109.47126 * 300.00555 * 1 2 3 23 23 H 1.09008 * 109.46539 * 59.99947 * 1 2 3 24 24 H 1.08994 * 109.47354 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47267 * 239.99763 * 2 1 3 26 26 H 1.08999 * 109.47599 * 172.02524 * 3 2 1 27 27 H 1.09003 * 109.46900 * 292.02092 * 3 2 1 28 28 H 1.08999 * 109.47252 * 52.01959 * 3 2 1 29 29 H 1.09000 * 108.82337 * 312.53850 * 5 4 2 30 30 H 1.09001 * 108.82200 * 70.83557 * 5 4 2 31 31 H 0.97000 * 119.99712 * 179.97438 * 11 10 8 32 32 H 1.00900 * 111.08610 * 330.74997 * 16 6 5 33 33 H 1.08999 * 108.93958 * 158.94348 * 17 16 6 34 34 H 1.08999 * 108.93687 * 40.23966 * 17 16 6 35 35 H 1.09001 * 108.98957 * 181.53679 * 18 17 16 36 36 H 1.08998 * 108.99020 * 300.27982 * 18 17 16 37 37 H 1.08993 * 109.47190 * 219.32094 * 20 19 4 38 38 H 1.08999 * 109.46924 * 339.32487 * 20 19 4 39 39 H 1.09001 * 109.47077 * 99.32212 * 20 19 4 40 40 H 1.08998 * 109.47260 * 305.19347 * 21 19 4 41 41 H 1.09002 * 109.46714 * 65.19454 * 21 19 4 42 42 H 1.08992 * 109.47467 * 185.19307 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.6455 0.0457 2.4288 6 6 2.3716 -0.4764 3.6816 7 1 3.3840 -0.0726 3.6963 8 6 1.6377 0.0054 4.9065 9 1 0.7526 0.6152 4.8007 10 6 2.0956 -0.3330 6.1622 11 7 3.1732 -1.0760 6.2910 12 14 1.1855 0.2636 7.6804 13 1 0.0132 1.0762 7.2674 14 1 0.7232 -0.9050 8.4715 15 1 2.0963 1.0934 8.5094 16 7 2.4424 -1.9175 3.7180 17 6 3.7235 -2.3753 3.1326 18 6 3.6870 -2.3894 1.6717 19 6 3.4278 -0.9850 1.0889 20 6 4.2311 0.0533 1.8748 21 6 3.8445 -0.9550 -0.3829 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1207 1.4457 0.1426 27 1 1.7979 1.9134 -0.9527 28 1 1.5650 1.9958 0.8100 29 1 1.8897 1.0995 2.2943 30 1 0.5702 -0.0471 2.5813 31 1 3.4956 -1.3138 7.1744 32 1 1.6572 -2.3317 3.2384 33 1 3.9362 -3.3825 3.4909 34 1 4.5206 -1.7079 3.4601 35 1 4.6415 -2.7587 1.2966 36 1 2.8944 -3.0617 1.3432 37 1 5.1331 0.3110 1.3197 38 1 3.6254 0.9479 2.0194 39 1 4.5072 -0.3594 2.8451 40 1 3.2119 -1.6349 -0.9536 41 1 3.7331 0.0573 -0.7715 42 1 4.8853 -1.2659 -0.4723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220423368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:04 Heat of formation + Delta-G solvation = 48.362225 kcal Electronic energy + Delta-G solvation = -19661.328398 eV Core-core repulsion = 17064.037377 eV Total energy + Delta-G solvation = -2597.291020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32473 -35.86909 -33.74883 -31.73738 -30.86860 -28.46421 -27.48003 -26.82913 -25.85110 -24.05486 -22.23011 -20.66915 -19.41354 -17.31448 -16.55925 -16.12079 -15.09649 -14.51965 -14.32524 -14.17954 -13.57496 -13.07109 -13.02029 -12.91767 -12.26133 -12.14893 -12.00197 -11.79198 -11.48407 -11.44558 -11.20488 -10.92527 -10.87940 -10.79329 -10.63483 -10.57303 -10.19457 -9.99116 -9.88346 -9.42832 -9.35906 -8.66924 -8.16366 -7.48074 -6.59556 -5.72521 -3.84069 3.39621 3.48103 3.50898 4.37110 4.61049 5.15279 5.24527 5.26873 5.40220 5.46552 5.50520 5.65856 5.80714 5.84106 5.90788 5.96180 5.97533 6.00383 6.11477 6.12472 6.22852 6.31438 6.34139 6.42440 6.47420 6.54200 6.55905 6.64624 6.79939 6.85443 6.87774 7.02829 7.23625 7.52028 7.75987 7.95754 8.05999 8.49676 8.86876 9.01730 9.41267 9.82080 11.31185 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028745 B = 0.008822 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.853284 B = 3173.138242 C = 3691.336036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 C -0.190 4.190 4 N -0.540 5.540 5 C 0.036 3.964 6 C 0.200 3.800 7 H 0.050 0.950 8 C -0.524 4.524 9 H 0.048 0.952 10 C 0.085 3.915 11 N -0.852 5.852 12 Si 0.879 3.121 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.288 1.288 16 N -0.622 5.622 17 C 0.054 3.946 18 C -0.131 4.131 19 C 0.123 3.877 20 C -0.199 4.199 21 C -0.152 4.152 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.251 0.749 32 H 0.313 0.687 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 0.884 -12.599 12.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 C -0.248 4.248 4 N -0.264 5.264 5 C -0.092 4.092 6 C 0.090 3.910 7 H 0.067 0.933 8 C -0.563 4.563 9 H 0.066 0.934 10 C -0.120 4.120 11 N -0.488 5.488 12 Si 0.707 3.293 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.215 1.215 16 N -0.249 5.249 17 C -0.076 4.076 18 C -0.171 4.171 19 C 0.032 3.968 20 C -0.256 4.256 21 C -0.210 4.210 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.679 0.332 -11.757 11.781 hybrid contribution -0.278 1.260 -0.144 1.298 sum 0.401 1.592 -11.901 12.013 Atomic orbital electron populations 1.21817 0.95114 1.01918 1.01024 1.21822 0.95211 0.92158 0.94434 1.22659 1.01804 0.98912 1.01443 1.61016 1.14377 1.48707 1.02318 1.23443 1.00833 0.95237 0.89696 1.19526 0.96762 0.85778 0.88887 0.93278 1.21057 1.12397 1.32320 0.90573 0.93413 1.24839 0.94672 0.94321 0.98187 1.70069 1.22004 1.34958 1.21797 0.86793 0.80004 0.78393 0.84099 1.20135 1.21229 1.21469 1.61228 1.00415 1.08633 1.54587 1.20948 0.96348 1.00062 0.90237 1.21431 1.00321 0.95817 0.99547 1.20579 0.87272 0.95176 0.93731 1.23310 0.99523 1.00199 1.02597 1.22366 1.00630 1.01678 0.96285 0.92509 0.93335 0.92281 0.89907 0.92032 0.93228 0.92118 0.95353 0.91904 0.93889 0.87038 0.93450 0.91612 0.93327 0.92162 0.94403 0.91587 0.88626 0.92312 0.92191 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.09 37.16 0.34 -1.60 16 2 C 0.07 1.05 2.42 -67.71 -0.16 0.88 16 3 C -0.19 -2.63 7.27 37.16 0.27 -2.36 16 4 N -0.54 -9.24 3.93 -210.54 -0.83 -10.06 16 5 C 0.04 0.73 3.30 -2.62 -0.01 0.72 16 6 C 0.20 4.78 1.77 -69.76 -0.12 4.66 16 7 H 0.05 1.26 4.09 -51.93 -0.21 1.05 16 8 C -0.52 -14.34 8.64 -34.44 -0.30 -14.64 16 9 H 0.05 1.31 7.69 -52.49 -0.40 0.91 16 10 C 0.09 2.38 5.37 -17.82 -0.10 2.28 16 11 N -0.85 -24.56 12.61 55.43 0.70 -23.87 16 12 Si 0.88 21.57 29.54 -169.99 -5.02 16.55 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 N -0.62 -14.63 5.50 -111.86 -0.61 -15.25 16 17 C 0.05 1.11 5.88 -6.41 -0.04 1.07 16 18 C -0.13 -2.25 4.65 -29.33 -0.14 -2.39 16 19 C 0.12 2.01 0.66 -132.37 -0.09 1.92 16 20 C -0.20 -3.53 6.40 37.16 0.24 -3.29 16 21 C -0.15 -2.06 6.72 37.16 0.25 -1.81 16 22 H 0.06 0.85 6.77 -51.93 -0.35 0.50 16 23 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 1.12 5.25 -51.93 -0.27 0.85 16 26 H 0.06 0.88 4.63 -51.93 -0.24 0.64 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.92 6.53 -51.93 -0.34 0.58 16 29 H 0.03 0.58 4.52 -51.93 -0.23 0.34 16 30 H 0.06 1.35 6.78 -51.93 -0.35 1.00 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 32 H 0.31 7.21 8.18 -39.29 -0.32 6.89 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.46 5.46 -51.93 -0.28 1.17 16 35 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 36 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 37 H 0.04 0.59 7.72 -51.93 -0.40 0.19 16 38 H 0.07 1.24 4.37 -51.93 -0.23 1.01 16 39 H 0.10 1.96 3.16 -51.93 -0.16 1.80 16 40 H 0.06 0.76 7.06 -51.93 -0.37 0.39 16 41 H 0.06 0.77 5.07 -51.93 -0.26 0.51 16 42 H 0.05 0.66 8.06 -51.93 -0.42 0.24 16 LS Contribution 287.33 15.07 4.33 4.33 Total: -1.00 -27.75 287.33 -7.80 -35.55 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.51 Total: 7.31 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 0.15 Total: -14.56 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.74 Total: -49.18 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.75 -7.80 -35.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.908 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds