Wall clock time and date at job start Mon Mar 30 2020 03:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47672 * 2 1 4 4 N 1.46902 * 109.47053 * 119.99998 * 2 1 3 5 5 C 1.48197 * 110.99968 * 294.99148 * 4 2 1 6 6 C 1.53927 * 112.77709 * 191.68570 * 5 4 2 7 7 H 1.09000 * 108.86805 * 79.16970 * 6 5 4 8 8 C 1.50701 * 108.86736 * 197.68772 * 6 5 4 9 9 H 1.08002 * 119.99935 * 0.02562 * 8 6 5 10 10 C 1.37878 * 120.00142 * 179.97438 * 8 6 5 11 11 N 1.31518 * 119.99708 * 0.02562 * 10 8 6 12 12 Si 1.86795 * 119.99842 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47493 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47014 * 120.00725 * 12 10 8 15 15 H 1.48500 * 109.47052 * 240.00072 * 12 10 8 16 16 N 1.44329 * 112.47403 * 318.37385 * 6 5 4 17 17 C 1.48105 * 109.94450 * 94.01483 * 16 6 5 18 18 C 1.46145 * 112.11500 * 279.59652 * 17 16 6 19 19 C 1.44250 * 111.00117 * 166.75444 * 4 2 1 20 20 C 1.52999 * 109.61040 * 100.09993 * 19 4 2 21 21 C 1.52995 * 109.61156 * 339.59170 * 19 4 2 22 22 H 1.08994 * 109.47126 * 300.00555 * 1 2 3 23 23 H 1.09008 * 109.46539 * 59.99947 * 1 2 3 24 24 H 1.08994 * 109.47354 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47267 * 239.99763 * 2 1 3 26 26 H 1.08999 * 109.47599 * 172.02524 * 3 2 1 27 27 H 1.09003 * 109.46900 * 292.02092 * 3 2 1 28 28 H 1.08999 * 109.47252 * 52.01959 * 3 2 1 29 29 H 1.09000 * 108.82337 * 312.53850 * 5 4 2 30 30 H 1.09001 * 108.82200 * 70.83557 * 5 4 2 31 31 H 0.97000 * 119.99712 * 179.97438 * 11 10 8 32 32 H 1.00900 * 111.08610 * 330.74997 * 16 6 5 33 33 H 1.08999 * 108.93958 * 158.94348 * 17 16 6 34 34 H 1.08999 * 108.93687 * 40.23966 * 17 16 6 35 35 H 1.09001 * 108.98957 * 181.53679 * 18 17 16 36 36 H 1.08998 * 108.99020 * 300.27982 * 18 17 16 37 37 H 1.08993 * 109.47190 * 219.32094 * 20 19 4 38 38 H 1.08999 * 109.46924 * 339.32487 * 20 19 4 39 39 H 1.09001 * 109.47077 * 99.32212 * 20 19 4 40 40 H 1.08998 * 109.47260 * 305.19347 * 21 19 4 41 41 H 1.09002 * 109.46714 * 65.19454 * 21 19 4 42 42 H 1.08992 * 109.47467 * 185.19307 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.6455 0.0457 2.4288 6 6 2.3716 -0.4764 3.6816 7 1 3.3840 -0.0726 3.6963 8 6 1.6377 0.0054 4.9065 9 1 0.7526 0.6152 4.8007 10 6 2.0956 -0.3330 6.1622 11 7 3.1732 -1.0760 6.2910 12 14 1.1855 0.2636 7.6804 13 1 0.0132 1.0762 7.2674 14 1 0.7232 -0.9050 8.4715 15 1 2.0963 1.0934 8.5094 16 7 2.4424 -1.9175 3.7180 17 6 3.7235 -2.3753 3.1326 18 6 3.6870 -2.3894 1.6717 19 6 3.4278 -0.9850 1.0889 20 6 4.2311 0.0533 1.8748 21 6 3.8445 -0.9550 -0.3829 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1207 1.4457 0.1426 27 1 1.7979 1.9134 -0.9527 28 1 1.5650 1.9958 0.8100 29 1 1.8897 1.0995 2.2943 30 1 0.5702 -0.0471 2.5813 31 1 3.4956 -1.3138 7.1744 32 1 1.6572 -2.3317 3.2384 33 1 3.9362 -3.3825 3.4909 34 1 4.5206 -1.7079 3.4601 35 1 4.6415 -2.7587 1.2966 36 1 2.8944 -3.0617 1.3432 37 1 5.1331 0.3110 1.3197 38 1 3.6254 0.9479 2.0194 39 1 4.5072 -0.3594 2.8451 40 1 3.2119 -1.6349 -0.9536 41 1 3.7331 0.0573 -0.7715 42 1 4.8853 -1.2659 -0.4723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220423368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:03 Heat of formation + Delta-G solvation = 29.648904 kcal Electronic energy + Delta-G solvation = -19662.139868 eV Core-core repulsion = 17064.037377 eV Total energy + Delta-G solvation = -2598.102491 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.75157 -37.38544 -35.39182 -33.60245 -32.37960 -29.90571 -28.85639 -28.08651 -27.51385 -25.79070 -23.71871 -22.31382 -20.88412 -18.76418 -18.47489 -17.49610 -16.66389 -16.25501 -16.03366 -15.56993 -15.00347 -14.59227 -14.45425 -14.27111 -14.08683 -13.72192 -13.23530 -13.00775 -12.83536 -12.77513 -12.68915 -12.57758 -12.47563 -12.41311 -12.23925 -12.09267 -11.75087 -11.53123 -11.21561 -11.07581 -11.05583 -10.60810 -10.20785 -8.86724 -8.43493 -7.83064 -6.03265 1.42159 1.45383 1.54377 2.51518 3.05959 3.35875 3.91205 3.95010 4.05581 4.20216 4.26374 4.31032 4.44782 4.50448 4.61879 4.68976 4.74918 4.79076 4.82413 4.87223 4.90790 4.95912 5.00441 5.07046 5.09082 5.17937 5.21866 5.29705 5.32670 5.43629 5.46455 5.48797 5.65557 5.66495 5.89937 6.26456 6.48264 6.65055 6.86338 7.19533 7.47327 7.67120 9.16135 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028745 B = 0.008822 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.853284 B = 3173.138242 C = 3691.336036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 C -0.184 4.184 4 N -0.543 5.543 5 C 0.057 3.943 6 C 0.204 3.796 7 H 0.032 0.968 8 C -0.542 4.542 9 H 0.038 0.962 10 C 0.038 3.962 11 N -0.879 5.879 12 Si 0.938 3.062 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.284 1.284 16 N -0.643 5.643 17 C 0.063 3.937 18 C -0.125 4.125 19 C 0.121 3.879 20 C -0.191 4.191 21 C -0.145 4.145 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.024 0.976 30 H 0.046 0.954 31 H 0.250 0.750 32 H 0.312 0.688 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 0.945 -14.744 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 C -0.242 4.242 4 N -0.267 5.267 5 C -0.071 4.071 6 C 0.095 3.905 7 H 0.049 0.951 8 C -0.582 4.582 9 H 0.056 0.944 10 C -0.164 4.164 11 N -0.516 5.516 12 Si 0.766 3.234 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.210 1.210 16 N -0.270 5.270 17 C -0.066 4.066 18 C -0.164 4.164 19 C 0.031 3.969 20 C -0.249 4.249 21 C -0.202 4.202 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.123 0.877 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.129 0.871 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.628 0.400 -13.916 13.936 hybrid contribution -0.246 1.246 0.516 1.371 sum 0.381 1.646 -13.400 13.506 Atomic orbital electron populations 1.21794 0.94625 1.01811 1.01309 1.22003 0.95650 0.92545 0.93683 1.22584 1.01230 0.98349 1.02073 1.60946 1.15120 1.48594 1.02014 1.22959 0.99112 0.95047 0.90009 1.19317 0.95641 0.86061 0.89515 0.95071 1.21475 1.12166 1.32148 0.92400 0.94380 1.25498 0.95472 0.94671 1.00780 1.70190 1.23167 1.36119 1.22117 0.85849 0.78939 0.77809 0.80832 1.19802 1.21243 1.21012 1.61019 1.01580 1.08441 1.55963 1.20828 0.94206 0.98908 0.92683 1.21300 1.01658 0.96680 0.96806 1.20653 0.86535 0.93947 0.95768 1.23162 1.00403 0.99790 1.01496 1.22298 1.01706 1.02738 0.93490 0.94550 0.90727 0.92583 0.87677 0.92439 0.90638 0.94110 0.95832 0.93551 0.94123 0.87109 0.93960 0.93621 0.90980 0.91925 0.92281 0.93100 0.91818 0.91087 0.91206 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.09 71.98 0.65 -2.84 16 2 C 0.07 1.81 2.42 44.91 0.11 1.92 16 3 C -0.18 -4.66 7.27 71.98 0.52 -4.14 16 4 N -0.54 -17.86 3.93 -820.01 -3.22 -21.08 16 5 C 0.06 2.36 3.30 86.37 0.29 2.64 16 6 C 0.20 10.05 1.77 44.96 0.08 10.13 16 7 H 0.03 1.68 4.09 -2.39 -0.01 1.67 16 8 C -0.54 -30.51 8.64 25.60 0.22 -30.29 16 9 H 0.04 2.15 7.69 -2.91 -0.02 2.13 16 10 C 0.04 2.19 5.37 84.65 0.45 2.64 16 11 N -0.88 -51.87 12.61 21.45 0.27 -51.60 16 12 Si 0.94 45.15 29.54 68.60 2.03 47.17 16 13 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 14 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 16 N -0.64 -30.92 5.50 -507.83 -2.79 -33.71 16 17 C 0.06 2.62 5.88 83.96 0.49 3.11 16 18 C -0.12 -4.08 4.65 28.91 0.13 -3.94 16 19 C 0.12 3.73 0.66 4.44 0.00 3.74 16 20 C -0.19 -6.65 6.40 71.98 0.46 -6.19 16 21 C -0.15 -3.34 6.72 71.98 0.48 -2.85 16 22 H 0.04 1.06 6.77 -2.39 -0.02 1.04 16 23 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 25 H 0.11 2.38 5.25 -2.39 -0.01 2.37 16 26 H 0.06 1.50 4.63 -2.39 -0.01 1.49 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.19 6.53 -2.39 -0.02 1.17 16 29 H 0.02 0.98 4.52 -2.39 -0.01 0.97 16 30 H 0.05 2.03 6.78 -2.39 -0.02 2.02 16 31 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.31 14.64 8.18 -89.69 -0.73 13.90 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 2.08 5.46 -2.39 -0.01 2.07 16 35 H 0.07 2.04 7.94 -2.39 -0.02 2.02 16 36 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 37 H 0.06 1.75 7.72 -2.39 -0.02 1.73 16 38 H 0.05 1.91 4.37 -2.39 -0.01 1.90 16 39 H 0.06 2.67 3.16 -2.39 -0.01 2.66 16 40 H 0.07 1.50 7.06 -2.39 -0.02 1.48 16 41 H 0.07 1.49 5.07 -2.39 -0.01 1.48 16 42 H 0.07 1.38 8.06 -2.39 -0.02 1.37 16 Total: -1.00 -60.55 287.33 0.48 -60.07 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.29 Total: 25.23 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.90 Total: -26.08 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -5.74 Total: -106.39 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -60.55 0.48 -60.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.718 kcal (2) G-P(sol) polarization free energy of solvation -60.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds