Wall clock time and date at job start Mon Mar 30 2020 03:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47593 * 2 1 4 4 N 1.46897 * 109.47472 * 173.71743 * 3 2 1 5 5 C 1.40017 * 110.99499 * 297.72903 * 4 3 2 6 6 H 1.08998 * 108.95984 * 67.52146 * 5 4 3 7 7 C 1.50691 * 108.96346 * 308.76777 * 5 4 3 8 8 H 1.08006 * 120.00284 * 354.59095 * 7 5 4 9 9 C 1.37884 * 119.99967 * 174.86654 * 7 5 4 10 10 N 1.31520 * 119.99676 * 179.72651 * 9 7 5 11 11 Si 1.86797 * 120.00074 * 359.72191 * 9 7 5 12 12 H 1.48498 * 109.47068 * 89.99838 * 11 9 7 13 13 H 1.48500 * 109.47241 * 210.00308 * 11 9 7 14 14 H 1.48504 * 109.46820 * 330.00349 * 11 9 7 15 15 C 1.54212 * 112.06998 * 188.09785 * 5 4 3 16 16 N 1.44571 * 108.86315 * 281.20438 * 15 5 4 17 17 C 1.48072 * 113.85924 * 94.22440 * 16 15 5 18 18 C 1.53694 * 112.46994 * 318.31615 * 17 16 15 19 19 C 1.47905 * 111.00145 * 65.70710 * 4 3 2 20 20 C 1.52995 * 109.63216 * 273.46418 * 19 4 3 21 21 C 1.53002 * 109.63126 * 34.06466 * 19 4 3 22 22 H 1.09005 * 109.47383 * 300.00063 * 1 2 3 23 23 H 1.08998 * 109.47312 * 60.00196 * 1 2 3 24 24 H 1.08998 * 109.47717 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47020 * 239.99563 * 2 1 3 26 26 H 1.08999 * 109.46973 * 120.00224 * 2 1 3 27 27 H 1.09002 * 109.47039 * 53.70913 * 3 2 1 28 28 H 1.09008 * 109.46781 * 293.71854 * 3 2 1 29 29 H 0.97005 * 119.99120 * 179.97438 * 10 9 7 30 30 H 1.08995 * 109.56759 * 41.02037 * 15 5 4 31 31 H 1.09001 * 109.56727 * 161.38921 * 15 5 4 32 32 H 1.00902 * 111.00216 * 328.10209 * 16 15 5 33 33 H 1.09001 * 108.88111 * 197.54230 * 17 16 15 34 34 H 1.09003 * 108.87905 * 79.09149 * 17 16 15 35 35 H 1.08996 * 108.95606 * 197.88599 * 18 17 16 36 36 H 1.09001 * 108.88315 * 79.18301 * 18 17 16 37 37 H 1.09001 * 109.47172 * 93.20865 * 20 19 4 38 38 H 1.09003 * 109.46966 * 213.20916 * 20 19 4 39 39 H 1.08996 * 109.47658 * 333.21108 * 20 19 4 40 40 H 1.08993 * 109.47275 * 58.09456 * 21 19 4 41 41 H 1.08998 * 109.46592 * 178.10249 * 21 19 4 42 42 H 1.08999 * 109.46643 * 298.09639 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5012 1.4452 0.1516 5 6 3.8796 0.8805 1.3756 6 1 3.6405 -0.1828 1.3641 7 6 3.1024 1.5449 2.4826 8 1 2.4562 2.3817 2.2618 9 6 3.2205 1.0881 3.7782 10 7 2.5462 1.6714 4.7451 11 14 4.3380 -0.3592 4.1601 12 1 5.7016 0.1378 4.4744 13 1 3.8014 -1.1044 5.3271 14 1 4.3992 -1.2615 2.9822 15 6 5.3876 1.0501 1.6505 16 7 6.1158 0.0609 0.8881 17 6 6.5947 0.5500 -0.4249 18 6 5.5456 1.4074 -1.1506 19 6 4.1572 0.8326 -1.0240 20 6 4.2437 -0.6829 -0.8327 21 6 3.3522 1.1506 -2.2857 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.5877 1.9878 0.8283 28 1 1.7714 1.9228 -0.9409 29 1 2.6291 1.3498 5.6565 30 1 5.7035 2.0488 1.3490 31 1 5.5831 0.9086 2.7134 32 1 5.5756 -0.7849 0.7838 33 1 6.8443 -0.3067 -1.0508 34 1 7.4939 1.1469 -0.2724 35 1 5.8082 1.4696 -2.2066 36 1 5.5538 2.4106 -0.7242 37 1 3.3761 -1.1571 -1.2915 38 1 5.1533 -1.0571 -1.3027 39 1 4.2634 -0.9143 0.2322 40 1 3.2727 2.2312 -2.4032 41 1 3.8558 0.7266 -3.1544 42 1 2.3546 0.7202 -2.1981 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220423615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:52 Heat of formation + Delta-G solvation = 48.466260 kcal Electronic energy + Delta-G solvation = -19916.310644 eV Core-core repulsion = 17319.024135 eV Total energy + Delta-G solvation = -2597.286509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52276 -35.60992 -34.19664 -32.29753 -31.55766 -28.59343 -27.53022 -27.30121 -25.44129 -23.43070 -21.96378 -20.87696 -20.09808 -17.57945 -17.22988 -15.69401 -15.51578 -15.19567 -14.51874 -14.35184 -13.61612 -13.46100 -12.87957 -12.86056 -12.64021 -12.22739 -11.93403 -11.84130 -11.67221 -11.56535 -11.36850 -11.21714 -10.95413 -10.75783 -10.51431 -10.45904 -10.17571 -10.05722 -9.84686 -9.62692 -9.44030 -9.07544 -8.62666 -7.55653 -7.09758 -6.07078 -4.05339 3.31172 3.40000 3.42031 4.40004 4.69615 4.94119 5.16016 5.21602 5.23818 5.47596 5.53387 5.58213 5.63839 5.75559 5.83313 5.89314 5.94689 5.99606 6.10474 6.12113 6.17527 6.29500 6.33074 6.36795 6.41959 6.47551 6.48506 6.57313 6.64155 6.74010 6.84152 6.97806 7.07005 7.26265 7.49652 7.82620 8.03517 8.13506 8.26596 8.78464 8.99511 9.55216 11.04572 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.013466 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.456999 B = 2078.809760 C = 2934.421696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.163 4.163 3 C 0.065 3.935 4 N -0.520 5.520 5 C 0.160 3.840 6 H 0.003 0.997 7 C -0.503 4.503 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.898 5.898 11 Si 0.882 3.118 12 H -0.274 1.274 13 H -0.299 1.299 14 H -0.268 1.268 15 C 0.060 3.940 16 N -0.717 5.717 17 C 0.067 3.933 18 C -0.138 4.138 19 C 0.111 3.889 20 C -0.206 4.206 21 C -0.142 4.142 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.263 0.737 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.340 0.660 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -3.665 -12.281 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.202 4.202 3 C -0.062 4.062 4 N -0.242 5.242 5 C 0.049 3.951 6 H 0.020 0.980 7 C -0.542 4.542 8 H 0.101 0.899 9 C -0.131 4.131 10 N -0.536 5.536 11 Si 0.712 3.288 12 H -0.201 1.201 13 H -0.226 1.226 14 H -0.193 1.193 15 C -0.069 4.069 16 N -0.351 5.351 17 C -0.062 4.062 18 C -0.178 4.178 19 C 0.022 3.978 20 C -0.264 4.264 21 C -0.200 4.200 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.873 -3.046 -11.748 12.471 hybrid contribution -0.433 -1.593 -0.063 1.652 sum 2.440 -4.639 -11.811 12.922 Atomic orbital electron populations 1.21663 0.96633 1.00497 1.01384 1.22395 0.95641 1.00329 1.01787 1.22208 0.87610 0.94886 1.01535 1.59613 1.06714 1.56819 1.01073 1.19279 0.93474 0.94076 0.88228 0.98042 1.21045 1.26039 1.17068 0.90028 0.89901 1.24963 0.95486 0.96393 0.96281 1.69889 1.41914 1.41213 1.00560 0.86963 0.80942 0.83256 0.77687 1.20106 1.22622 1.19258 1.22367 0.92926 0.94709 0.96909 1.59848 1.48205 1.09070 1.18009 1.22239 0.96850 0.97757 0.89369 1.22053 0.94343 1.01549 0.99838 1.20664 0.94147 0.91407 0.91588 1.23252 1.01351 0.97937 1.03878 1.22117 1.00072 1.01828 0.95949 0.92343 0.93703 0.93883 0.92664 0.91088 0.88941 0.92617 0.92684 0.91332 0.91362 0.83623 0.92488 0.92010 0.92380 0.90692 0.92706 0.92637 0.89829 0.92166 0.93207 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.16 -2.85 4.37 -26.73 -0.12 -2.96 16 3 C 0.06 1.22 4.35 -3.83 -0.02 1.20 16 4 N -0.52 -10.25 4.04 -217.27 -0.88 -11.12 16 5 C 0.16 3.59 0.53 -71.79 -0.04 3.55 16 6 H 0.00 0.06 2.72 -51.93 -0.14 -0.08 16 7 C -0.50 -13.47 8.13 -34.44 -0.28 -13.75 16 8 H 0.08 2.43 6.41 -52.48 -0.34 2.09 16 9 C 0.07 1.98 5.42 -17.81 -0.10 1.89 16 10 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 11 Si 0.88 21.85 24.55 -169.99 -4.17 17.68 16 12 H -0.27 -6.80 6.78 56.52 0.38 -6.41 16 13 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 14 H -0.27 -6.35 6.43 56.52 0.36 -5.98 16 15 C 0.06 1.32 4.87 -4.44 -0.02 1.30 16 16 N -0.72 -13.59 6.53 -113.49 -0.74 -14.34 16 17 C 0.07 1.05 5.75 -2.82 -0.02 1.03 16 18 C -0.14 -2.13 4.73 -27.47 -0.13 -2.26 16 19 C 0.11 1.80 0.64 -132.15 -0.08 1.72 16 20 C -0.21 -3.25 6.02 37.16 0.22 -3.03 16 21 C -0.14 -1.98 6.83 37.16 0.25 -1.72 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.88 3.98 -51.92 -0.21 0.68 16 26 H 0.07 1.46 6.29 -51.93 -0.33 1.13 16 27 H 0.09 2.02 5.78 -51.93 -0.30 1.72 16 28 H 0.06 0.93 5.94 -51.92 -0.31 0.63 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.07 1.52 6.93 -51.93 -0.36 1.16 16 31 H 0.07 1.66 3.93 -51.93 -0.20 1.45 16 32 H 0.34 6.42 5.05 -39.29 -0.20 6.22 16 33 H 0.06 0.78 7.00 -51.93 -0.36 0.42 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.76 7.69 -51.93 -0.40 0.36 16 36 H 0.07 1.29 7.22 -51.93 -0.38 0.92 16 37 H 0.05 0.82 5.76 -51.93 -0.30 0.52 16 38 H 0.05 0.79 6.11 -51.93 -0.32 0.47 16 39 H 0.08 1.54 2.89 -51.93 -0.15 1.39 16 40 H 0.06 0.84 7.96 -51.93 -0.41 0.42 16 41 H 0.05 0.60 8.07 -51.93 -0.42 0.18 16 42 H 0.06 0.87 5.02 -51.93 -0.26 0.61 16 LS Contribution 276.58 15.07 4.17 4.17 Total: -1.00 -28.15 276.58 -7.07 -35.22 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.26 Total: 9.36 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 0.05 Total: -14.89 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.85 Total: -51.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.17 Total: 17.68 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.15 -7.07 -35.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.683 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds