Wall clock time and date at job start Mon Mar 30 2020 03:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47593 * 2 1 4 4 N 1.46897 * 109.47472 * 173.71743 * 3 2 1 5 5 C 1.40017 * 110.99499 * 297.72903 * 4 3 2 6 6 H 1.08998 * 108.95984 * 67.52146 * 5 4 3 7 7 C 1.50691 * 108.96346 * 308.76777 * 5 4 3 8 8 H 1.08006 * 120.00284 * 354.59095 * 7 5 4 9 9 C 1.37884 * 119.99967 * 174.86654 * 7 5 4 10 10 N 1.31520 * 119.99676 * 179.72651 * 9 7 5 11 11 Si 1.86797 * 120.00074 * 359.72191 * 9 7 5 12 12 H 1.48498 * 109.47068 * 89.99838 * 11 9 7 13 13 H 1.48500 * 109.47241 * 210.00308 * 11 9 7 14 14 H 1.48504 * 109.46820 * 330.00349 * 11 9 7 15 15 C 1.54212 * 112.06998 * 188.09785 * 5 4 3 16 16 N 1.44571 * 108.86315 * 281.20438 * 15 5 4 17 17 C 1.48072 * 113.85924 * 94.22440 * 16 15 5 18 18 C 1.53694 * 112.46994 * 318.31615 * 17 16 15 19 19 C 1.47905 * 111.00145 * 65.70710 * 4 3 2 20 20 C 1.52995 * 109.63216 * 273.46418 * 19 4 3 21 21 C 1.53002 * 109.63126 * 34.06466 * 19 4 3 22 22 H 1.09005 * 109.47383 * 300.00063 * 1 2 3 23 23 H 1.08998 * 109.47312 * 60.00196 * 1 2 3 24 24 H 1.08998 * 109.47717 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47020 * 239.99563 * 2 1 3 26 26 H 1.08999 * 109.46973 * 120.00224 * 2 1 3 27 27 H 1.09002 * 109.47039 * 53.70913 * 3 2 1 28 28 H 1.09008 * 109.46781 * 293.71854 * 3 2 1 29 29 H 0.97005 * 119.99120 * 179.97438 * 10 9 7 30 30 H 1.08995 * 109.56759 * 41.02037 * 15 5 4 31 31 H 1.09001 * 109.56727 * 161.38921 * 15 5 4 32 32 H 1.00902 * 111.00216 * 328.10209 * 16 15 5 33 33 H 1.09001 * 108.88111 * 197.54230 * 17 16 15 34 34 H 1.09003 * 108.87905 * 79.09149 * 17 16 15 35 35 H 1.08996 * 108.95606 * 197.88599 * 18 17 16 36 36 H 1.09001 * 108.88315 * 79.18301 * 18 17 16 37 37 H 1.09001 * 109.47172 * 93.20865 * 20 19 4 38 38 H 1.09003 * 109.46966 * 213.20916 * 20 19 4 39 39 H 1.08996 * 109.47658 * 333.21108 * 20 19 4 40 40 H 1.08993 * 109.47275 * 58.09456 * 21 19 4 41 41 H 1.08998 * 109.46592 * 178.10249 * 21 19 4 42 42 H 1.08999 * 109.46643 * 298.09639 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5012 1.4452 0.1516 5 6 3.8796 0.8805 1.3756 6 1 3.6405 -0.1828 1.3641 7 6 3.1024 1.5449 2.4826 8 1 2.4562 2.3817 2.2618 9 6 3.2205 1.0881 3.7782 10 7 2.5462 1.6714 4.7451 11 14 4.3380 -0.3592 4.1601 12 1 5.7016 0.1378 4.4744 13 1 3.8014 -1.1044 5.3271 14 1 4.3992 -1.2615 2.9822 15 6 5.3876 1.0501 1.6505 16 7 6.1158 0.0609 0.8881 17 6 6.5947 0.5500 -0.4249 18 6 5.5456 1.4074 -1.1506 19 6 4.1572 0.8326 -1.0240 20 6 4.2437 -0.6829 -0.8327 21 6 3.3522 1.1506 -2.2857 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.5877 1.9878 0.8283 28 1 1.7714 1.9228 -0.9409 29 1 2.6291 1.3498 5.6565 30 1 5.7035 2.0488 1.3490 31 1 5.5831 0.9086 2.7134 32 1 5.5756 -0.7849 0.7838 33 1 6.8443 -0.3067 -1.0508 34 1 7.4939 1.1469 -0.2724 35 1 5.8082 1.4696 -2.2066 36 1 5.5538 2.4106 -0.7242 37 1 3.3761 -1.1571 -1.2915 38 1 5.1533 -1.0571 -1.3027 39 1 4.2634 -0.9143 0.2322 40 1 3.2727 2.2312 -2.4032 41 1 3.8558 0.7266 -3.1544 42 1 2.3546 0.7202 -2.1981 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220423615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:52 Heat of formation + Delta-G solvation = 27.220183 kcal Electronic energy + Delta-G solvation = -19917.231943 eV Core-core repulsion = 17319.024135 eV Total energy + Delta-G solvation = -2598.207808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.99216 -37.06117 -35.86841 -33.99009 -33.25826 -29.90895 -29.10276 -28.61461 -27.13249 -24.92965 -23.54004 -22.34065 -21.65906 -19.14374 -18.96861 -17.35488 -17.06487 -16.65539 -16.29411 -15.74194 -15.25187 -14.86696 -14.56740 -14.29314 -14.16230 -13.72544 -13.52463 -13.19850 -13.06620 -12.95548 -12.75062 -12.68380 -12.36795 -12.34652 -12.14545 -11.86980 -11.75445 -11.52262 -11.44521 -11.28019 -11.00267 -10.85717 -10.75029 -9.10848 -8.66074 -8.26370 -6.26329 1.31373 1.34405 1.41932 2.31026 3.06366 3.25776 3.51018 3.95246 3.98104 4.09471 4.23542 4.29542 4.33775 4.44927 4.48640 4.53888 4.65379 4.70822 4.76893 4.82571 4.84157 4.90770 4.96435 5.02810 5.08533 5.15354 5.19250 5.24063 5.26931 5.32333 5.43553 5.49177 5.54352 5.61731 5.71326 6.11399 6.30739 6.51800 6.59101 6.84308 7.03498 7.39254 8.88884 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.013466 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.456999 B = 2078.809760 C = 2934.421696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.154 4.154 3 C 0.069 3.931 4 N -0.538 5.538 5 C 0.177 3.823 6 H -0.001 1.001 7 C -0.495 4.495 8 H 0.043 0.957 9 C 0.016 3.984 10 N -0.947 5.947 11 Si 0.940 3.060 12 H -0.273 1.273 13 H -0.303 1.303 14 H -0.249 1.249 15 C 0.071 3.929 16 N -0.719 5.719 17 C 0.065 3.935 18 C -0.135 4.135 19 C 0.107 3.893 20 C -0.200 4.200 21 C -0.138 4.138 22 H 0.034 0.966 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.263 0.737 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.343 0.657 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.386 -5.368 -15.545 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.192 4.192 3 C -0.059 4.059 4 N -0.260 5.260 5 C 0.065 3.935 6 H 0.016 0.984 7 C -0.534 4.534 8 H 0.062 0.938 9 C -0.181 4.181 10 N -0.588 5.588 11 Si 0.768 3.232 12 H -0.199 1.199 13 H -0.231 1.231 14 H -0.173 1.173 15 C -0.059 4.059 16 N -0.355 5.355 17 C -0.064 4.064 18 C -0.175 4.175 19 C 0.018 3.982 20 C -0.259 4.259 21 C -0.196 4.196 22 H 0.053 0.947 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.167 0.833 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.117 -4.756 -15.053 16.314 hybrid contribution -0.843 -0.974 0.855 1.546 sum 3.274 -5.730 -14.198 15.657 Atomic orbital electron populations 1.21636 0.95192 1.01593 1.01434 1.22284 0.96918 0.98934 1.01091 1.22108 0.87249 0.95597 1.00901 1.59514 1.07340 1.57686 1.01469 1.18989 0.93144 0.93221 0.88147 0.98430 1.21341 1.25009 1.15531 0.91555 0.93837 1.25686 0.97030 0.99062 0.96300 1.70035 1.44338 1.43410 1.00983 0.85998 0.78953 0.80483 0.77748 1.19926 1.23063 1.17332 1.22019 0.92633 0.95193 0.96082 1.59776 1.47293 1.08360 1.20025 1.22382 0.96851 0.99108 0.88017 1.22032 0.93758 0.99995 1.01668 1.20875 0.94703 0.91764 0.90835 1.23160 1.03106 0.97368 1.02223 1.22091 1.00024 1.01991 0.95448 0.94711 0.91258 0.92257 0.90212 0.94668 0.93351 0.90058 0.92838 0.92181 0.93920 0.83313 0.89477 0.91472 0.89007 0.93046 0.91616 0.90280 0.92581 0.92372 0.90290 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.91 71.98 0.71 -3.48 16 2 C -0.15 -5.21 4.37 30.59 0.13 -5.08 16 3 C 0.07 2.58 4.35 86.30 0.38 2.96 16 4 N -0.54 -20.87 4.04 -841.31 -3.40 -24.27 16 5 C 0.18 7.97 0.53 45.82 0.02 7.99 16 6 H 0.00 -0.05 2.72 -2.39 -0.01 -0.06 16 7 C -0.50 -27.76 8.13 25.60 0.21 -27.56 16 8 H 0.04 2.73 6.41 -2.91 -0.02 2.72 16 9 C 0.02 0.95 5.42 84.66 0.46 1.41 16 10 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 11 Si 0.94 46.33 24.55 68.60 1.68 48.02 16 12 H -0.27 -13.28 6.78 99.48 0.67 -12.61 16 13 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 14 H -0.25 -11.40 6.43 99.48 0.64 -10.76 16 15 C 0.07 3.08 4.87 87.15 0.42 3.51 16 16 N -0.72 -25.63 6.53 -512.96 -3.35 -28.98 16 17 C 0.06 1.78 5.75 86.31 0.50 2.28 16 18 C -0.14 -3.68 4.73 30.11 0.14 -3.54 16 19 C 0.11 3.12 0.64 2.62 0.00 3.12 16 20 C -0.20 -5.56 6.02 71.98 0.43 -5.13 16 21 C -0.14 -3.23 6.83 71.98 0.49 -2.74 16 22 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 2.30 3.98 -2.38 -0.01 2.29 16 26 H 0.03 1.44 6.29 -2.39 -0.02 1.43 16 27 H 0.05 2.23 5.78 -2.39 -0.01 2.22 16 28 H 0.08 2.60 5.94 -2.38 -0.01 2.59 16 29 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 30 H 0.06 2.67 6.93 -2.39 -0.02 2.65 16 31 H 0.04 2.08 3.93 -2.39 -0.01 2.07 16 32 H 0.34 12.01 5.05 -89.69 -0.45 11.55 16 33 H 0.09 1.92 7.00 -2.39 -0.02 1.90 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.92 7.69 -2.39 -0.02 1.90 16 36 H 0.05 1.66 7.22 -2.39 -0.02 1.65 16 37 H 0.07 1.67 5.76 -2.39 -0.01 1.65 16 38 H 0.08 1.82 6.11 -2.39 -0.01 1.81 16 39 H 0.06 1.92 2.89 -2.39 -0.01 1.91 16 40 H 0.06 1.40 7.96 -2.39 -0.02 1.38 16 41 H 0.08 1.43 8.07 -2.39 -0.02 1.41 16 42 H 0.06 1.48 5.02 -2.39 -0.01 1.47 16 Total: -1.00 -64.33 276.58 -0.39 -64.72 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.48 Total: 25.93 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 3.90 Total: -26.25 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -6.45 Total: -112.41 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.68 Total: 48.02 kcal Total: -64.33 -0.39 -64.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.939 kcal (2) G-P(sol) polarization free energy of solvation -64.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds