Wall clock time and date at job start Mon Mar 30 2020 03:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46956 * 2 1 4 4 N 1.46905 * 109.46982 * 180.61585 * 3 2 1 5 5 C 1.48092 * 110.99662 * 52.31201 * 4 3 2 6 6 H 1.08998 * 108.94801 * 277.16959 * 5 4 3 7 7 C 1.50703 * 108.87573 * 35.84340 * 5 4 3 8 8 H 1.07996 * 120.00311 * 31.45937 * 7 5 4 9 9 C 1.37876 * 120.00129 * 211.45384 * 7 5 4 10 10 N 1.31525 * 119.99558 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 120.00398 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46632 * 60.00102 * 11 9 7 13 13 H 1.48496 * 109.47193 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46912 * 300.00401 * 11 9 7 15 15 C 1.46091 * 112.14437 * 156.48022 * 5 4 3 16 16 N 1.48086 * 112.15935 * 60.68522 * 15 5 4 17 17 C 1.44173 * 109.89994 * 279.63700 * 16 15 5 18 18 C 1.54312 * 112.61329 * 94.34720 * 17 16 15 19 19 C 1.44178 * 111.00364 * 289.75276 * 4 3 2 20 20 C 1.53001 * 108.85647 * 96.71394 * 19 4 3 21 21 C 1.53000 * 108.76741 * 338.27526 * 19 4 3 22 22 H 1.09007 * 109.47027 * 59.99671 * 1 2 3 23 23 H 1.08990 * 109.47152 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47284 * 300.00069 * 1 2 3 25 25 H 1.09000 * 109.47417 * 240.00462 * 2 1 3 26 26 H 1.09000 * 109.47325 * 120.00101 * 2 1 3 27 27 H 1.09000 * 109.47412 * 60.61978 * 3 2 1 28 28 H 1.08997 * 109.47232 * 300.61678 * 3 2 1 29 29 H 0.97001 * 119.99457 * 179.97438 * 10 9 7 30 30 H 1.09004 * 108.94586 * 181.37702 * 15 5 4 31 31 H 1.08997 * 108.94717 * 299.99665 * 15 5 4 32 32 H 1.00909 * 110.99628 * 42.80682 * 16 15 5 33 33 H 1.09000 * 108.85752 * 215.16064 * 17 16 15 34 34 H 1.09008 * 108.85349 * 333.54260 * 17 16 15 35 35 H 1.09001 * 109.02745 * 79.50827 * 18 17 16 36 36 H 1.09004 * 109.02934 * 198.42136 * 18 17 16 37 37 H 1.08997 * 109.47066 * 172.44761 * 20 19 4 38 38 H 1.09000 * 109.46951 * 292.44772 * 20 19 4 39 39 H 1.08999 * 109.46955 * 52.44274 * 20 19 4 40 40 H 1.09002 * 109.47361 * 302.92122 * 21 19 4 41 41 H 1.08997 * 109.47365 * 62.92055 * 21 19 4 42 42 H 1.09000 * 109.46941 * 182.91879 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 -0.0149 5 6 4.0285 0.6013 -1.1173 6 1 4.0384 -0.4395 -0.7938 7 6 3.1119 0.7348 -2.3061 8 1 2.5870 1.6622 -2.4818 9 6 2.9435 -0.3268 -3.1695 10 7 3.5824 -1.4563 -2.9553 11 14 1.8079 -0.1611 -4.6435 12 1 2.2886 0.9392 -5.5173 13 1 1.8005 -1.4340 -5.4082 14 1 0.4316 0.1431 -4.1762 15 6 5.3801 0.9875 -1.5148 16 7 6.3491 0.8532 -0.4031 17 6 6.2532 1.9949 0.4721 18 6 5.3103 1.7479 1.6684 19 6 4.0385 0.9832 1.2450 20 6 4.3727 -0.5053 1.1276 21 6 2.9695 1.1657 2.3242 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6858 1.9532 0.8955 28 1 1.6676 1.9596 -0.8844 29 1 3.4637 -2.2033 -3.5626 30 1 5.7005 0.3539 -2.3419 31 1 5.3678 2.0246 -1.8500 32 1 6.1996 -0.0056 0.1051 33 1 7.2472 2.2333 0.8504 34 1 5.8823 2.8462 -0.0988 35 1 5.8393 1.1670 2.4239 36 1 5.0206 2.7075 2.0967 37 1 4.8962 -0.8320 2.0260 38 1 3.4512 -1.0768 1.0160 39 1 5.0084 -0.6674 0.2572 40 1 2.6661 2.2119 2.3619 41 1 2.1051 0.5450 2.0881 42 1 3.3756 0.8701 3.2915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220423674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:55 Heat of formation + Delta-G solvation = 48.587036 kcal Electronic energy + Delta-G solvation = -19949.366090 eV Core-core repulsion = 17352.084818 eV Total energy + Delta-G solvation = -2597.281272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26659 -35.50734 -34.04763 -32.08494 -31.18883 -28.72141 -27.43440 -26.67959 -25.06071 -23.21407 -21.92016 -20.60743 -20.13356 -17.37747 -16.90248 -15.66089 -14.98191 -14.60722 -14.33424 -14.16565 -13.70901 -12.95818 -12.92857 -12.48249 -12.43544 -12.01521 -11.97318 -11.77881 -11.34760 -11.11289 -11.02113 -10.94116 -10.84179 -10.66042 -10.61858 -10.24660 -10.14320 -9.96741 -9.81537 -9.44292 -9.11290 -8.78339 -8.46748 -7.50723 -6.90702 -6.09884 -4.10520 3.27587 3.33061 3.35882 4.36430 4.91921 5.22026 5.33158 5.36996 5.43936 5.67954 5.77942 5.80735 5.87083 5.99568 6.09710 6.13303 6.14981 6.21013 6.30116 6.35535 6.40826 6.52726 6.55336 6.59349 6.61480 6.71135 6.74753 6.83183 7.01278 7.08183 7.16540 7.40163 7.54951 7.72850 7.76528 7.89060 8.16060 8.20879 8.40538 8.69042 9.00189 9.51886 10.97992 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.011727 C = 0.008949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.785674 B = 2387.107102 C = 3128.234964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.173 4.173 3 C 0.076 3.924 4 N -0.526 5.526 5 C 0.147 3.853 6 H 0.063 0.937 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.078 3.922 16 N -0.699 5.699 17 C 0.069 3.931 18 C -0.130 4.130 19 C 0.108 3.892 20 C -0.201 4.201 21 C -0.158 4.158 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.263 0.737 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.335 0.665 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 2.784 7.884 8.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.211 4.211 3 C -0.052 4.052 4 N -0.250 5.250 5 C 0.041 3.959 6 H 0.081 0.919 7 C -0.543 4.543 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.530 5.530 11 Si 0.716 3.284 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.050 4.050 16 N -0.332 5.332 17 C -0.062 4.062 18 C -0.170 4.170 19 C 0.017 3.983 20 C -0.260 4.260 21 C -0.215 4.215 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.127 0.873 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.116 3.344 7.355 8.080 hybrid contribution -1.835 -0.990 -0.196 2.094 sum -1.951 2.354 7.160 7.785 Atomic orbital electron populations 1.21666 0.97759 1.00194 1.00405 1.22669 0.94460 1.00099 1.03893 1.22007 0.87844 0.95148 1.00170 1.62135 1.06858 1.54057 1.01919 1.19355 0.93156 0.94393 0.88981 0.91943 1.21029 1.26140 0.98707 1.08377 0.92240 1.24899 0.95823 0.95229 0.97775 1.69904 1.42316 1.03124 1.37687 0.86712 0.81402 0.77302 0.83011 1.20216 1.21422 1.20252 1.21204 0.90389 1.00901 0.92496 1.61250 1.53825 1.04844 1.13298 1.21608 0.96245 0.95275 0.93072 1.22688 0.95950 0.99797 0.98594 1.20676 0.93863 0.92300 0.91484 1.23271 1.03064 0.97770 1.01846 1.22456 0.99544 1.01765 0.97755 0.93121 0.94044 0.94351 0.87258 0.93140 0.93182 0.90937 0.92764 0.90883 0.92982 0.84092 0.93431 0.91773 0.93060 0.92485 0.94146 0.91828 0.88990 0.92531 0.91222 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.17 -3.39 3.97 -26.73 -0.11 -3.49 16 3 C 0.08 1.49 4.32 -3.82 -0.02 1.47 16 4 N -0.53 -10.65 4.42 -216.56 -0.96 -11.60 16 5 C 0.15 3.36 0.81 -71.48 -0.06 3.30 16 6 H 0.06 1.54 3.48 -51.93 -0.18 1.36 16 7 C -0.50 -12.62 5.46 -34.44 -0.19 -12.80 16 8 H 0.06 1.54 6.59 -52.49 -0.35 1.19 16 9 C 0.07 1.67 4.75 -17.82 -0.08 1.59 16 10 N -0.89 -23.94 12.85 55.43 0.71 -23.23 16 11 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.08 1.78 5.20 -6.45 -0.03 1.74 16 16 N -0.70 -13.84 6.88 -117.73 -0.81 -14.65 16 17 C 0.07 1.22 6.11 -4.59 -0.03 1.20 16 18 C -0.13 -2.13 5.16 -25.35 -0.13 -2.26 16 19 C 0.11 1.91 0.68 -132.37 -0.09 1.82 16 20 C -0.20 -3.68 6.17 37.16 0.23 -3.45 16 21 C -0.16 -2.48 6.82 37.16 0.25 -2.22 16 22 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.11 2.58 4.91 -51.93 -0.25 2.32 16 26 H 0.05 0.96 3.78 -51.93 -0.20 0.76 16 27 H 0.05 0.88 5.41 -51.93 -0.28 0.60 16 28 H 0.07 1.54 6.42 -51.93 -0.33 1.21 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.07 1.84 8.13 -51.93 -0.42 1.41 16 31 H 0.05 1.21 7.37 -51.93 -0.38 0.83 16 32 H 0.34 6.56 4.90 -39.29 -0.19 6.37 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.22 7.17 -51.92 -0.37 0.85 16 35 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 36 H 0.06 0.88 7.98 -51.93 -0.41 0.47 16 37 H 0.04 0.65 7.87 -51.93 -0.41 0.24 16 38 H 0.06 1.23 5.25 -51.93 -0.27 0.96 16 39 H 0.09 1.88 2.94 -51.93 -0.15 1.73 16 40 H 0.06 0.86 7.22 -51.93 -0.37 0.49 16 41 H 0.07 1.12 4.52 -51.93 -0.23 0.88 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 285.10 15.07 4.30 4.30 Total: -1.00 -25.05 285.10 -8.14 -33.19 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.47 Total: 11.66 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 0.12 Total: -15.17 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -1.05 Total: -49.49 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -25.05 -8.14 -33.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.777 kcal (2) G-P(sol) polarization free energy of solvation -25.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds