Wall clock time and date at job start Mon Mar 30 2020 03:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47509 * 2 1 4 4 N 1.46898 * 109.47438 * 120.00491 * 2 1 3 5 5 C 1.44583 * 110.99748 * 315.97065 * 4 2 1 6 6 H 1.08994 * 109.57207 * 100.53757 * 5 4 2 7 7 C 1.50703 * 109.67766 * 340.21823 * 5 4 2 8 8 H 1.08004 * 119.99815 * 2.88312 * 7 5 4 9 9 C 1.37875 * 119.99881 * 182.87819 * 7 5 4 10 10 N 1.31506 * 120.00053 * 0.02562 * 9 7 5 11 11 Si 1.86810 * 119.99682 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47004 * 90.00302 * 11 9 7 13 13 H 1.48503 * 109.46708 * 210.00079 * 11 9 7 14 14 H 1.48503 * 109.47049 * 329.99721 * 11 9 7 15 15 C 1.54202 * 108.84865 * 220.35071 * 5 4 2 16 16 N 1.40013 * 112.08202 * 281.18248 * 15 5 4 17 17 C 1.47909 * 114.07301 * 61.80367 * 16 15 5 18 18 C 1.50806 * 108.49983 * 280.08444 * 17 16 15 19 19 C 1.48061 * 111.00139 * 83.65423 * 4 2 1 20 20 C 1.52997 * 108.88346 * 312.97137 * 19 4 2 21 21 C 1.52996 * 108.88285 * 71.53222 * 19 4 2 22 22 H 1.09003 * 109.46998 * 260.65642 * 1 2 3 23 23 H 1.09003 * 109.46911 * 20.64842 * 1 2 3 24 24 H 1.08996 * 109.47737 * 140.65268 * 1 2 3 25 25 H 1.09002 * 109.46791 * 240.00002 * 2 1 3 26 26 H 1.09001 * 109.47192 * 215.38357 * 3 2 1 27 27 H 1.08999 * 109.46831 * 335.37700 * 3 2 1 28 28 H 1.08997 * 109.46686 * 95.37740 * 3 2 1 29 29 H 0.97000 * 119.99966 * 180.02562 * 10 9 7 30 30 H 1.08994 * 108.95661 * 160.50781 * 15 5 4 31 31 H 1.08997 * 108.88843 * 41.80069 * 15 5 4 32 32 H 1.00905 * 110.99680 * 295.51068 * 16 15 5 33 33 H 1.09007 * 109.62624 * 39.78489 * 17 16 15 34 34 H 1.08997 * 109.63384 * 160.37957 * 17 16 15 35 35 H 1.09001 * 108.95191 * 213.21910 * 18 17 16 36 36 H 1.09002 * 108.95070 * 331.86955 * 18 17 16 37 37 H 1.09000 * 109.47310 * 60.00414 * 20 19 4 38 38 H 1.08998 * 109.47379 * 179.97438 * 20 19 4 39 39 H 1.09002 * 109.47495 * 300.00265 * 20 19 4 40 40 H 1.09004 * 109.47327 * 50.15745 * 21 19 4 41 41 H 1.09004 * 109.47141 * 170.15575 * 21 19 4 42 42 H 1.08999 * 109.46874 * 290.16100 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.2774 -0.2862 2.3717 6 1 0.5325 -1.0443 2.6131 7 6 0.5917 1.0295 2.1073 8 1 0.6654 1.4907 1.1335 9 6 -0.1299 1.6442 3.1084 10 7 -0.2194 1.0827 4.2942 11 14 -0.9806 3.2747 2.7804 12 1 -2.3571 3.0236 2.2833 13 1 -1.0443 4.0615 4.0383 14 1 -0.2163 4.0351 1.7591 15 6 2.2571 -0.1300 3.5522 16 7 2.6036 -1.3641 4.1154 17 6 3.2986 -2.2787 3.1837 18 6 2.2682 -2.9340 2.2987 19 6 2.0525 -2.1579 0.9897 20 6 0.7271 -2.5986 0.3655 21 6 3.1903 -2.4945 0.0237 22 1 -0.3633 -0.1669 1.0141 23 1 -0.3633 0.9617 -0.3624 24 1 -0.3634 -0.7946 -0.6515 25 1 1.8932 -0.5139 -0.8900 26 1 2.9511 1.5057 -0.5951 27 1 1.2804 2.0964 -0.4282 28 1 2.2519 1.7528 1.0231 29 1 -0.7274 1.5150 4.9985 30 1 1.7925 0.4909 4.3181 31 1 3.1617 0.3636 3.1971 32 1 1.7991 -1.8116 4.5287 33 1 4.0010 -1.7132 2.5712 34 1 3.8334 -3.0413 3.7497 35 1 2.5977 -3.9453 2.0606 36 1 1.3223 -2.9891 2.8376 37 1 0.5894 -2.0927 -0.5901 38 1 0.7411 -3.6769 0.2064 39 1 -0.0935 -2.3404 1.0348 40 1 4.1076 -2.0114 0.3603 41 1 3.3369 -3.5743 -0.0028 42 1 2.9369 -2.1375 -0.9745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220423758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:58 Heat of formation + Delta-G solvation = 58.663858 kcal Electronic energy + Delta-G solvation = -20083.294015 eV Core-core repulsion = 17486.449707 eV Total energy + Delta-G solvation = -2596.844308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.93282 -35.85825 -34.64984 -32.02535 -30.04231 -28.25493 -27.44994 -26.69083 -25.60112 -23.55100 -21.74866 -20.56558 -19.83062 -17.42606 -16.97320 -15.64068 -14.62294 -14.38288 -14.06100 -13.94264 -13.61563 -13.13155 -12.87881 -12.61847 -12.32677 -11.93625 -11.80180 -11.49796 -11.34708 -11.04502 -10.88778 -10.85255 -10.74902 -10.62257 -10.40787 -10.23104 -10.18077 -9.95621 -9.70777 -9.43761 -9.27830 -8.50679 -8.34121 -7.32153 -6.82679 -6.01925 -3.96707 3.27279 3.35856 3.37799 4.39514 4.83384 5.19940 5.28243 5.40560 5.55252 5.64639 5.80451 5.98951 6.02487 6.06263 6.14904 6.15774 6.24524 6.27819 6.37447 6.42307 6.51321 6.60227 6.69238 6.70996 6.72858 6.82240 6.86972 6.91005 6.98693 7.19163 7.28546 7.45261 7.57860 7.84228 7.89214 8.15395 8.32920 8.51189 8.62312 8.84796 9.05536 9.58396 11.03351 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025436 B = 0.011633 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.538631 B = 2406.357833 C = 2994.258671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.102 3.898 3 C -0.139 4.139 4 N -0.529 5.529 5 C 0.187 3.813 6 H 0.002 0.998 7 C -0.531 4.531 8 H 0.103 0.897 9 C 0.057 3.943 10 N -0.889 5.889 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.074 3.926 16 N -0.696 5.696 17 C 0.070 3.930 18 C -0.137 4.137 19 C 0.112 3.888 20 C -0.179 4.179 21 C -0.132 4.132 22 H 0.114 0.886 23 H 0.038 0.962 24 H 0.019 0.981 25 H 0.049 0.951 26 H 0.023 0.977 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.259 0.741 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.332 0.668 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -5.499 -5.727 8.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.007 4.007 3 C -0.196 4.196 4 N -0.254 5.254 5 C 0.079 3.921 6 H 0.020 0.980 7 C -0.569 4.569 8 H 0.121 0.879 9 C -0.144 4.144 10 N -0.528 5.528 11 Si 0.713 3.287 12 H -0.210 1.210 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.057 4.057 16 N -0.325 5.325 17 C -0.059 4.059 18 C -0.176 4.176 19 C 0.023 3.977 20 C -0.237 4.237 21 C -0.190 4.190 22 H 0.132 0.868 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.058 0.942 32 H 0.150 0.850 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.558 -5.063 -5.209 8.575 hybrid contribution -2.284 0.314 -0.893 2.473 sum 2.274 -4.749 -6.102 8.060 Atomic orbital electron populations 1.23517 0.97215 0.98628 1.04929 1.21261 0.93134 0.94641 0.91640 1.22279 0.97978 0.95464 1.03856 1.61419 1.57177 1.02792 1.03981 1.19816 0.90636 0.94916 0.86765 0.98042 1.22550 1.29327 1.05491 0.99524 0.87946 1.24937 0.96942 0.97355 0.95178 1.69872 1.41277 1.38970 1.02680 0.86684 0.79922 0.84372 0.77701 1.21018 1.21329 1.19837 1.21166 0.96800 0.89654 0.98070 1.58313 1.32169 1.06278 1.35699 1.21668 0.96239 0.95089 0.92949 1.22186 1.00405 0.98356 0.96702 1.21215 0.93235 0.89360 0.93926 1.22856 0.99326 0.99816 1.01714 1.21893 0.99023 0.99562 0.98541 0.86796 0.94330 0.96233 0.93288 0.95760 0.93881 0.88616 0.93073 0.87556 0.94172 0.84983 0.90749 0.92871 0.92677 0.92446 0.91683 0.94174 0.92406 0.92130 0.93524 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.71 6.49 37.15 0.24 -3.47 16 2 C 0.10 1.97 2.25 -67.72 -0.15 1.81 16 3 C -0.14 -2.70 8.23 37.16 0.31 -2.39 16 4 N -0.53 -10.56 3.45 -204.40 -0.70 -11.26 16 5 C 0.19 4.30 0.94 -69.48 -0.07 4.23 16 6 H 0.00 0.05 5.79 -51.93 -0.30 -0.25 16 7 C -0.53 -13.01 3.96 -34.44 -0.14 -13.14 16 8 H 0.10 2.42 2.06 -54.40 -0.11 2.31 16 9 C 0.06 1.47 5.20 -17.82 -0.09 1.38 16 10 N -0.89 -23.90 11.19 55.43 0.62 -23.28 16 11 Si 0.88 20.50 29.54 -169.99 -5.02 15.48 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.07 1.73 5.34 -6.75 -0.04 1.69 16 16 N -0.70 -14.28 6.46 -118.32 -0.76 -15.04 16 17 C 0.07 1.23 6.24 -4.37 -0.03 1.21 16 18 C -0.14 -2.32 4.12 -27.47 -0.11 -2.43 16 19 C 0.11 1.95 0.33 -130.60 -0.04 1.91 16 20 C -0.18 -3.04 6.55 37.16 0.24 -2.79 16 21 C -0.13 -2.00 8.18 37.16 0.30 -1.70 16 22 H 0.11 2.65 3.98 -51.93 -0.21 2.45 16 23 H 0.04 0.76 6.84 -51.93 -0.35 0.41 16 24 H 0.02 0.35 5.92 -51.93 -0.31 0.04 16 25 H 0.05 0.89 5.81 -51.93 -0.30 0.59 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.81 6.88 -51.93 -0.36 0.46 16 28 H 0.10 2.12 5.85 -51.93 -0.30 1.81 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.11 2.80 5.59 -51.93 -0.29 2.51 16 31 H 0.04 0.97 8.06 -51.93 -0.42 0.55 16 32 H 0.33 6.88 8.21 -39.29 -0.32 6.56 16 33 H 0.07 1.39 6.92 -51.93 -0.36 1.03 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.81 7.75 -51.93 -0.40 0.41 16 36 H 0.06 1.06 6.63 -51.93 -0.34 0.72 16 37 H 0.06 1.09 4.73 -51.93 -0.25 0.85 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 1.11 6.51 -51.93 -0.34 0.77 16 40 H 0.06 0.94 7.60 -51.93 -0.39 0.55 16 41 H 0.05 0.62 7.81 -51.93 -0.41 0.21 16 42 H 0.05 0.70 6.76 -51.93 -0.35 0.35 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -24.90 282.24 -7.71 -32.61 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.52 Total: 10.94 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 0.43 Total: -13.70 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.85 Total: -49.59 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -24.90 -7.71 -32.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.271 kcal (2) G-P(sol) polarization free energy of solvation -24.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds