Wall clock time and date at job start Mon Mar 30 2020 03:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47509 * 2 1 4 4 N 1.46898 * 109.47438 * 120.00491 * 2 1 3 5 5 C 1.44583 * 110.99748 * 315.97065 * 4 2 1 6 6 H 1.08994 * 109.57207 * 100.53757 * 5 4 2 7 7 C 1.50703 * 109.67766 * 340.21823 * 5 4 2 8 8 H 1.08004 * 119.99815 * 2.88312 * 7 5 4 9 9 C 1.37875 * 119.99881 * 182.87819 * 7 5 4 10 10 N 1.31506 * 120.00053 * 0.02562 * 9 7 5 11 11 Si 1.86810 * 119.99682 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47004 * 90.00302 * 11 9 7 13 13 H 1.48503 * 109.46708 * 210.00079 * 11 9 7 14 14 H 1.48503 * 109.47049 * 329.99721 * 11 9 7 15 15 C 1.54202 * 108.84865 * 220.35071 * 5 4 2 16 16 N 1.40013 * 112.08202 * 281.18248 * 15 5 4 17 17 C 1.47909 * 114.07301 * 61.80367 * 16 15 5 18 18 C 1.50806 * 108.49983 * 280.08444 * 17 16 15 19 19 C 1.48061 * 111.00139 * 83.65423 * 4 2 1 20 20 C 1.52997 * 108.88346 * 312.97137 * 19 4 2 21 21 C 1.52996 * 108.88285 * 71.53222 * 19 4 2 22 22 H 1.09003 * 109.46998 * 260.65642 * 1 2 3 23 23 H 1.09003 * 109.46911 * 20.64842 * 1 2 3 24 24 H 1.08996 * 109.47737 * 140.65268 * 1 2 3 25 25 H 1.09002 * 109.46791 * 240.00002 * 2 1 3 26 26 H 1.09001 * 109.47192 * 215.38357 * 3 2 1 27 27 H 1.08999 * 109.46831 * 335.37700 * 3 2 1 28 28 H 1.08997 * 109.46686 * 95.37740 * 3 2 1 29 29 H 0.97000 * 119.99966 * 180.02562 * 10 9 7 30 30 H 1.08994 * 108.95661 * 160.50781 * 15 5 4 31 31 H 1.08997 * 108.88843 * 41.80069 * 15 5 4 32 32 H 1.00905 * 110.99680 * 295.51068 * 16 15 5 33 33 H 1.09007 * 109.62624 * 39.78489 * 17 16 15 34 34 H 1.08997 * 109.63384 * 160.37957 * 17 16 15 35 35 H 1.09001 * 108.95191 * 213.21910 * 18 17 16 36 36 H 1.09002 * 108.95070 * 331.86955 * 18 17 16 37 37 H 1.09000 * 109.47310 * 60.00414 * 20 19 4 38 38 H 1.08998 * 109.47379 * 179.97438 * 20 19 4 39 39 H 1.09002 * 109.47495 * 300.00265 * 20 19 4 40 40 H 1.09004 * 109.47327 * 50.15745 * 21 19 4 41 41 H 1.09004 * 109.47141 * 170.15575 * 21 19 4 42 42 H 1.08999 * 109.46874 * 290.16100 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.2774 -0.2862 2.3717 6 1 0.5325 -1.0443 2.6131 7 6 0.5917 1.0295 2.1073 8 1 0.6654 1.4907 1.1335 9 6 -0.1299 1.6442 3.1084 10 7 -0.2194 1.0827 4.2942 11 14 -0.9806 3.2747 2.7804 12 1 -2.3571 3.0236 2.2833 13 1 -1.0443 4.0615 4.0383 14 1 -0.2163 4.0351 1.7591 15 6 2.2571 -0.1300 3.5522 16 7 2.6036 -1.3641 4.1154 17 6 3.2986 -2.2787 3.1837 18 6 2.2682 -2.9340 2.2987 19 6 2.0525 -2.1579 0.9897 20 6 0.7271 -2.5986 0.3655 21 6 3.1903 -2.4945 0.0237 22 1 -0.3633 -0.1669 1.0141 23 1 -0.3633 0.9617 -0.3624 24 1 -0.3634 -0.7946 -0.6515 25 1 1.8932 -0.5139 -0.8900 26 1 2.9511 1.5057 -0.5951 27 1 1.2804 2.0964 -0.4282 28 1 2.2519 1.7528 1.0231 29 1 -0.7274 1.5150 4.9985 30 1 1.7925 0.4909 4.3181 31 1 3.1617 0.3636 3.1971 32 1 1.7991 -1.8116 4.5287 33 1 4.0010 -1.7132 2.5712 34 1 3.8334 -3.0413 3.7497 35 1 2.5977 -3.9453 2.0606 36 1 1.3223 -2.9891 2.8376 37 1 0.5894 -2.0927 -0.5901 38 1 0.7411 -3.6769 0.2064 39 1 -0.0935 -2.3404 1.0348 40 1 4.1076 -2.0114 0.3603 41 1 3.3369 -3.5743 -0.0028 42 1 2.9369 -2.1375 -0.9745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220423758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:57 Heat of formation + Delta-G solvation = 42.372732 kcal Electronic energy + Delta-G solvation = -20084.000451 eV Core-core repulsion = 17486.449707 eV Total energy + Delta-G solvation = -2597.550744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51795 -37.45768 -36.26607 -33.85620 -31.68799 -29.75929 -28.90398 -28.40847 -27.08615 -25.30743 -23.29107 -22.30227 -21.37328 -19.04707 -18.72105 -17.29436 -16.28191 -16.14959 -15.65396 -15.53261 -15.17775 -14.68571 -14.43905 -14.17332 -14.01330 -13.44460 -13.22328 -13.17332 -12.83423 -12.71437 -12.50512 -12.45659 -12.33428 -12.20200 -11.95279 -11.91417 -11.78904 -11.52433 -11.42289 -11.04538 -10.93645 -10.34905 -10.24655 -8.96437 -8.50312 -7.98951 -5.95585 1.39913 1.44410 1.50557 2.47500 3.23781 3.35732 3.81693 3.95385 4.08450 4.22408 4.34660 4.53430 4.64075 4.66513 4.74232 4.76152 4.84603 4.90048 4.92250 4.96549 5.03442 5.12838 5.16699 5.23038 5.25360 5.25689 5.30215 5.39248 5.40990 5.52567 5.63948 5.77330 5.81940 5.94623 6.07598 6.25605 6.62589 6.78334 6.85842 7.11352 7.18559 7.61277 9.05574 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025436 B = 0.011633 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.538631 B = 2406.357833 C = 2994.258671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 C -0.135 4.135 4 N -0.533 5.533 5 C 0.205 3.795 6 H -0.032 1.032 7 C -0.524 4.524 8 H 0.113 0.887 9 C 0.008 3.992 10 N -0.918 5.918 11 Si 0.933 3.067 12 H -0.285 1.285 13 H -0.293 1.293 14 H -0.265 1.265 15 C 0.090 3.910 16 N -0.701 5.701 17 C 0.074 3.926 18 C -0.133 4.133 19 C 0.103 3.897 20 C -0.170 4.170 21 C -0.125 4.125 22 H 0.078 0.922 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.253 0.747 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.329 0.671 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.669 -6.640 -7.819 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.009 4.009 3 C -0.192 4.192 4 N -0.257 5.257 5 C 0.095 3.905 6 H -0.014 1.014 7 C -0.563 4.563 8 H 0.130 0.870 9 C -0.189 4.189 10 N -0.559 5.559 11 Si 0.761 3.239 12 H -0.212 1.212 13 H -0.220 1.220 14 H -0.190 1.190 15 C -0.042 4.042 16 N -0.329 5.329 17 C -0.054 4.054 18 C -0.172 4.172 19 C 0.014 3.986 20 C -0.229 4.229 21 C -0.182 4.182 22 H 0.096 0.904 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.653 -6.210 -7.325 11.143 hybrid contribution -2.587 0.599 -0.280 2.671 sum 3.065 -5.610 -7.605 9.935 Atomic orbital electron populations 1.23332 0.97893 0.99195 1.03035 1.21347 0.92501 0.94838 0.92164 1.22175 0.99191 0.95581 1.02301 1.61377 1.56183 1.04943 1.03222 1.19468 0.89746 0.93308 0.87980 1.01406 1.22964 1.27978 1.05758 0.99567 0.86982 1.25547 0.98185 0.99893 0.95312 1.70013 1.42516 1.40092 1.03313 0.85910 0.78989 0.81692 0.77289 1.21184 1.21964 1.18981 1.20816 0.95671 0.90483 0.97202 1.58248 1.31985 1.06085 1.36613 1.21717 0.96023 0.94883 0.92813 1.22143 0.99031 0.99942 0.96118 1.21443 0.94632 0.87550 0.95006 1.22745 0.97874 1.01403 1.00865 1.21823 0.97366 1.01261 0.97778 0.90367 0.94491 0.94318 0.90936 0.93480 0.93525 0.91708 0.93737 0.90997 0.95535 0.85302 0.91427 0.90302 0.89435 0.94663 0.91324 0.91794 0.95482 0.92555 0.90976 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.88 6.49 71.98 0.47 -6.42 16 2 C 0.10 3.67 2.25 44.91 0.10 3.77 16 3 C -0.14 -5.03 8.23 71.98 0.59 -4.44 16 4 N -0.53 -20.72 3.45 -800.58 -2.76 -23.48 16 5 C 0.20 9.56 0.94 45.01 0.04 9.60 16 6 H -0.03 -1.68 5.79 -2.39 -0.01 -1.69 16 7 C -0.52 -26.18 3.96 25.60 0.10 -26.07 16 8 H 0.11 5.30 2.06 -4.71 -0.01 5.29 16 9 C 0.01 0.44 5.20 84.66 0.44 0.88 16 10 N -0.92 -51.45 11.19 21.45 0.24 -51.21 16 11 Si 0.93 42.88 29.54 68.60 2.03 44.90 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 15 C 0.09 4.32 5.34 87.95 0.47 4.79 16 16 N -0.70 -29.00 6.46 -528.26 -3.41 -32.42 16 17 C 0.07 2.49 6.24 85.40 0.53 3.03 16 18 C -0.13 -4.22 4.12 30.12 0.12 -4.09 16 19 C 0.10 3.34 0.33 3.54 0.00 3.34 16 20 C -0.17 -5.41 6.55 71.98 0.47 -4.94 16 21 C -0.12 -3.26 8.18 71.98 0.59 -2.67 16 22 H 0.08 3.67 3.98 -2.39 -0.01 3.66 16 23 H 0.04 1.41 6.84 -2.39 -0.02 1.40 16 24 H 0.04 1.33 5.92 -2.39 -0.01 1.32 16 25 H 0.07 2.36 5.81 -2.39 -0.01 2.35 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.68 6.88 -2.39 -0.02 1.66 16 28 H 0.06 2.83 5.85 -2.39 -0.01 2.81 16 29 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.07 3.97 5.59 -2.39 -0.01 3.95 16 31 H 0.03 1.31 8.06 -2.39 -0.02 1.29 16 32 H 0.33 13.98 8.21 -89.69 -0.74 13.25 16 33 H 0.07 2.39 6.92 -2.38 -0.02 2.38 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 2.22 7.75 -2.39 -0.02 2.20 16 36 H 0.03 1.28 6.63 -2.39 -0.02 1.26 16 37 H 0.07 2.10 4.73 -2.39 -0.01 2.09 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.03 1.01 6.51 -2.39 -0.02 0.99 16 40 H 0.06 1.54 7.60 -2.38 -0.02 1.52 16 41 H 0.07 1.54 7.81 -2.39 -0.02 1.52 16 42 H 0.05 1.34 6.76 -2.39 -0.02 1.32 16 Total: -1.00 -54.93 282.24 0.31 -54.62 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.28 Total: 30.81 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 3.93 Total: -23.23 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -5.93 Total: -107.10 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -54.93 0.31 -54.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.993 kcal (2) G-P(sol) polarization free energy of solvation -54.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds