Wall clock time and date at job start Mon Mar 30 2020 03:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 N 1.46898 * 109.46943 * 120.00019 * 2 1 3 5 5 C 1.47745 * 110.99888 * 326.29653 * 4 2 1 6 6 H 1.09008 * 108.99008 * 205.56077 * 5 4 2 7 7 C 1.50693 * 108.99560 * 324.39523 * 5 4 2 8 8 H 1.07997 * 120.00364 * 6.83715 * 7 5 4 9 9 C 1.37882 * 120.00037 * 186.84206 * 7 5 4 10 10 N 1.31509 * 119.99890 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99767 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47350 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47384 * 120.00080 * 11 9 7 14 14 H 1.48504 * 109.46954 * 239.99796 * 11 9 7 15 15 C 1.50775 * 111.84818 * 84.98109 * 5 4 2 16 16 N 1.47614 * 108.14279 * 94.68771 * 15 5 4 17 17 C 1.40089 * 114.50265 * 278.59762 * 16 15 5 18 18 C 1.54517 * 111.50914 * 61.44716 * 17 16 15 19 19 C 1.48065 * 111.00120 * 93.89682 * 4 2 1 20 20 C 1.52999 * 108.78836 * 313.11420 * 19 4 2 21 21 C 1.53001 * 108.78700 * 71.43785 * 19 4 2 22 22 H 1.08998 * 109.47253 * 303.73920 * 1 2 3 23 23 H 1.09006 * 109.47257 * 63.73725 * 1 2 3 24 24 H 1.08998 * 109.47656 * 183.73721 * 1 2 3 25 25 H 1.09000 * 109.47058 * 240.00049 * 2 1 3 26 26 H 1.09001 * 109.47134 * 221.25436 * 3 2 1 27 27 H 1.09002 * 109.47041 * 341.25187 * 3 2 1 28 28 H 1.09003 * 109.47219 * 101.24950 * 3 2 1 29 29 H 0.97003 * 119.99642 * 179.97438 * 10 9 7 30 30 H 1.09000 * 109.74128 * 214.22007 * 15 5 4 31 31 H 1.09001 * 109.73939 * 334.91965 * 15 5 4 32 32 H 1.00897 * 111.03778 * 45.27125 * 16 15 5 33 33 H 1.09003 * 109.06755 * 300.92546 * 17 16 15 34 34 H 1.08994 * 109.07033 * 181.97209 * 17 16 15 35 35 H 1.08989 * 109.55938 * 164.15326 * 18 17 16 36 36 H 1.09000 * 109.56093 * 43.82759 * 18 17 16 37 37 H 1.09005 * 109.47534 * 38.70966 * 20 19 4 38 38 H 1.08996 * 109.47380 * 158.71212 * 20 19 4 39 39 H 1.09002 * 109.46938 * 278.71078 * 20 19 4 40 40 H 1.09002 * 109.47067 * 54.66358 * 21 19 4 41 41 H 1.09008 * 109.46680 * 174.65884 * 21 19 4 42 42 H 1.08995 * 109.47772 * 294.65853 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.1142 -0.4705 2.3456 6 1 1.6802 -0.5788 3.2709 7 6 0.5615 0.9294 2.2701 8 1 0.7623 1.5433 1.4046 9 6 -0.2005 1.4266 3.3062 10 7 -0.4454 0.6789 4.3599 11 14 -0.8862 3.1616 3.2122 12 1 -0.4707 3.7895 1.9322 13 1 -2.3687 3.1125 3.2816 14 1 -0.3638 3.9625 4.3484 15 6 -0.0315 -1.4506 2.3537 16 7 0.3393 -2.5839 3.2238 17 6 1.1560 -3.5434 2.6116 18 6 2.5050 -2.9370 2.1645 19 6 2.2850 -2.1213 0.9160 20 6 1.0935 -2.7017 0.1517 21 6 3.5321 -2.2257 0.0358 22 1 -0.3634 0.5708 0.8546 23 1 -0.3634 0.4548 -0.9216 24 1 -0.3634 -1.0254 0.0670 25 1 1.8933 -0.5138 -0.8900 26 1 2.8895 1.5275 -0.6776 27 1 1.2436 2.1095 -0.3303 28 1 2.3502 1.7183 1.0079 29 1 -0.9812 1.0288 5.0889 30 1 -0.9269 -0.9671 2.7443 31 1 -0.2175 -1.8078 1.3409 32 1 0.7479 -2.2591 4.0873 33 1 0.6402 -3.9462 1.7399 34 1 1.3454 -4.3523 3.3172 35 1 3.2142 -3.7381 1.9567 36 1 2.8969 -2.2964 2.9545 37 1 0.7241 -1.9637 -0.5603 38 1 1.4068 -3.5980 -0.3836 39 1 0.3005 -2.9570 0.8547 40 1 4.3606 -1.7052 0.5163 41 1 3.7930 -3.2751 -0.1016 42 1 3.3313 -1.7713 -0.9343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220423820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:01 Heat of formation + Delta-G solvation = 92.728346 kcal Electronic energy + Delta-G solvation = -20220.736384 eV Core-core repulsion = 17625.369223 eV Total energy + Delta-G solvation = -2595.367161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56575 -35.85576 -34.35618 -32.05122 -30.03844 -28.38012 -27.36621 -26.88253 -25.46994 -24.19844 -21.83813 -20.37840 -19.60319 -17.52899 -17.01479 -15.93328 -14.96916 -14.60570 -14.14542 -13.80650 -13.36405 -13.15639 -12.92508 -12.51361 -12.22648 -11.97981 -11.80477 -11.42948 -11.31472 -11.15850 -10.96001 -10.89506 -10.83356 -10.73083 -10.45894 -10.19459 -10.15835 -9.94764 -9.54778 -9.29915 -8.93142 -8.55030 -8.20053 -7.46851 -6.78879 -6.05642 -3.98673 3.26720 3.36379 3.38388 4.37358 4.84449 5.21748 5.31403 5.36738 5.57289 5.69570 5.79580 5.90090 5.97437 6.00492 6.09377 6.13899 6.23132 6.28471 6.36433 6.41224 6.44935 6.52148 6.61093 6.61753 6.72755 6.82487 6.84978 6.96527 7.00521 7.18189 7.20332 7.37859 7.70640 7.78238 7.90178 8.07501 8.30788 8.38842 8.59875 8.74763 9.01213 9.53663 11.01237 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.011567 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.184412 B = 2420.118793 C = 3035.807817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.101 3.899 3 C -0.136 4.136 4 N -0.531 5.531 5 C 0.191 3.809 6 H 0.040 0.960 7 C -0.524 4.524 8 H 0.097 0.903 9 C 0.057 3.943 10 N -0.880 5.880 11 Si 0.886 3.114 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.027 3.973 16 N -0.705 5.705 17 C 0.062 3.938 18 C -0.153 4.153 19 C 0.115 3.885 20 C -0.226 4.226 21 C -0.132 4.132 22 H 0.147 0.853 23 H 0.022 0.978 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.260 0.740 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.344 0.656 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -4.872 -6.110 8.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.007 4.007 3 C -0.193 4.193 4 N -0.256 5.256 5 C 0.084 3.916 6 H 0.057 0.943 7 C -0.562 4.562 8 H 0.114 0.886 9 C -0.145 4.145 10 N -0.518 5.518 11 Si 0.714 3.286 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.101 4.101 16 N -0.335 5.335 17 C -0.070 4.070 18 C -0.194 4.194 19 C 0.025 3.975 20 C -0.283 4.283 21 C -0.190 4.190 22 H 0.164 0.836 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.164 0.836 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.193 -5.011 -5.956 8.413 hybrid contribution -0.228 0.978 -0.233 1.031 sum 2.965 -4.033 -6.189 7.960 Atomic orbital electron populations 1.24247 0.97228 1.03403 1.05017 1.21222 0.93627 0.94390 0.91500 1.22050 0.98573 0.95997 1.02703 1.62473 1.49577 1.07759 1.05789 1.19721 0.88319 0.95069 0.88503 0.94260 1.21991 1.30803 0.98958 1.04427 0.88562 1.24986 0.97061 0.97137 0.95366 1.69979 1.38538 1.35970 1.07294 0.86620 0.78715 0.85143 0.78151 1.19648 1.21172 1.21138 1.23286 1.01780 0.89339 0.95681 1.57927 1.48008 1.18216 1.09321 1.21278 0.91228 0.95518 0.99012 1.22455 0.99863 0.98874 0.98202 1.20569 0.93539 0.89262 0.94130 1.23882 1.01307 1.01033 1.02107 1.21938 0.98083 0.99813 0.99156 0.83607 0.95937 0.92870 0.93539 0.95469 0.93650 0.89638 0.93025 0.89249 0.90627 0.83598 0.90850 0.93018 0.92524 0.91289 0.90961 0.94221 0.88567 0.92440 0.93576 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.83 6.65 37.16 0.25 -4.58 16 2 C 0.10 1.96 2.12 -67.71 -0.14 1.82 16 3 C -0.14 -2.60 8.23 37.16 0.31 -2.29 16 4 N -0.53 -10.80 4.16 -205.71 -0.86 -11.66 16 5 C 0.19 4.39 1.64 -69.52 -0.11 4.27 16 6 H 0.04 1.04 6.73 -51.92 -0.35 0.69 16 7 C -0.52 -12.84 4.45 -34.44 -0.15 -12.99 16 8 H 0.10 2.30 2.70 -52.49 -0.14 2.16 16 9 C 0.06 1.46 5.03 -17.82 -0.09 1.37 16 10 N -0.88 -23.46 11.99 55.43 0.66 -22.80 16 11 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.03 0.60 4.35 -4.55 -0.02 0.58 16 16 N -0.70 -14.33 6.41 -118.33 -0.76 -15.09 16 17 C 0.06 1.07 5.93 -6.55 -0.04 1.03 16 18 C -0.15 -2.64 5.05 -27.06 -0.14 -2.78 16 19 C 0.11 2.03 0.67 -132.09 -0.09 1.94 16 20 C -0.23 -3.83 5.93 37.16 0.22 -3.61 16 21 C -0.13 -2.08 8.14 37.16 0.30 -1.77 16 22 H 0.15 3.32 3.66 -65.55 -0.24 3.08 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 1.04 3.62 -51.93 -0.19 0.85 16 25 H 0.05 0.86 5.43 -51.93 -0.28 0.57 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.84 7.39 -51.93 -0.38 0.46 16 28 H 0.08 1.83 6.33 -51.93 -0.33 1.50 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.09 2.29 6.34 -51.93 -0.33 1.96 16 31 H 0.08 1.59 1.88 -51.93 -0.10 1.49 16 32 H 0.34 7.43 8.15 -39.29 -0.32 7.11 16 33 H 0.07 1.25 5.03 -51.93 -0.26 0.99 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.86 7.53 -51.93 -0.39 0.47 16 36 H 0.07 1.33 7.19 -51.93 -0.37 0.96 16 37 H 0.07 1.26 3.93 -51.93 -0.20 1.06 16 38 H 0.04 0.60 7.97 -51.93 -0.41 0.18 16 39 H 0.10 1.74 2.68 -51.93 -0.14 1.60 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.63 7.84 -51.92 -0.41 0.23 16 42 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 LS Contribution 273.58 15.07 4.12 4.12 Total: -1.00 -24.70 273.58 -7.58 -32.28 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -6.02 Total: 14.94 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 0.29 Total: -17.02 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.95 Total: -49.54 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -24.70 -7.58 -32.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.007 kcal (2) G-P(sol) polarization free energy of solvation -24.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds