Wall clock time and date at job start Mon Mar 30 2020 03:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 N 1.46898 * 109.46943 * 120.00019 * 2 1 3 5 5 C 1.47745 * 110.99888 * 326.29653 * 4 2 1 6 6 H 1.09008 * 108.99008 * 205.56077 * 5 4 2 7 7 C 1.50693 * 108.99560 * 324.39523 * 5 4 2 8 8 H 1.07997 * 120.00364 * 6.83715 * 7 5 4 9 9 C 1.37882 * 120.00037 * 186.84206 * 7 5 4 10 10 N 1.31509 * 119.99890 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99767 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47350 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47384 * 120.00080 * 11 9 7 14 14 H 1.48504 * 109.46954 * 239.99796 * 11 9 7 15 15 C 1.50775 * 111.84818 * 84.98109 * 5 4 2 16 16 N 1.47614 * 108.14279 * 94.68771 * 15 5 4 17 17 C 1.40089 * 114.50265 * 278.59762 * 16 15 5 18 18 C 1.54517 * 111.50914 * 61.44716 * 17 16 15 19 19 C 1.48065 * 111.00120 * 93.89682 * 4 2 1 20 20 C 1.52999 * 108.78836 * 313.11420 * 19 4 2 21 21 C 1.53001 * 108.78700 * 71.43785 * 19 4 2 22 22 H 1.08998 * 109.47253 * 303.73920 * 1 2 3 23 23 H 1.09006 * 109.47257 * 63.73725 * 1 2 3 24 24 H 1.08998 * 109.47656 * 183.73721 * 1 2 3 25 25 H 1.09000 * 109.47058 * 240.00049 * 2 1 3 26 26 H 1.09001 * 109.47134 * 221.25436 * 3 2 1 27 27 H 1.09002 * 109.47041 * 341.25187 * 3 2 1 28 28 H 1.09003 * 109.47219 * 101.24950 * 3 2 1 29 29 H 0.97003 * 119.99642 * 179.97438 * 10 9 7 30 30 H 1.09000 * 109.74128 * 214.22007 * 15 5 4 31 31 H 1.09001 * 109.73939 * 334.91965 * 15 5 4 32 32 H 1.00897 * 111.03778 * 45.27125 * 16 15 5 33 33 H 1.09003 * 109.06755 * 300.92546 * 17 16 15 34 34 H 1.08994 * 109.07033 * 181.97209 * 17 16 15 35 35 H 1.08989 * 109.55938 * 164.15326 * 18 17 16 36 36 H 1.09000 * 109.56093 * 43.82759 * 18 17 16 37 37 H 1.09005 * 109.47534 * 38.70966 * 20 19 4 38 38 H 1.08996 * 109.47380 * 158.71212 * 20 19 4 39 39 H 1.09002 * 109.46938 * 278.71078 * 20 19 4 40 40 H 1.09002 * 109.47067 * 54.66358 * 21 19 4 41 41 H 1.09008 * 109.46680 * 174.65884 * 21 19 4 42 42 H 1.08995 * 109.47772 * 294.65853 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.1142 -0.4705 2.3456 6 1 1.6802 -0.5788 3.2709 7 6 0.5615 0.9294 2.2701 8 1 0.7623 1.5433 1.4046 9 6 -0.2005 1.4266 3.3062 10 7 -0.4454 0.6789 4.3599 11 14 -0.8862 3.1616 3.2122 12 1 -0.4707 3.7895 1.9322 13 1 -2.3687 3.1125 3.2816 14 1 -0.3638 3.9625 4.3484 15 6 -0.0315 -1.4506 2.3537 16 7 0.3393 -2.5839 3.2238 17 6 1.1560 -3.5434 2.6116 18 6 2.5050 -2.9370 2.1645 19 6 2.2850 -2.1213 0.9160 20 6 1.0935 -2.7017 0.1517 21 6 3.5321 -2.2257 0.0358 22 1 -0.3634 0.5708 0.8546 23 1 -0.3634 0.4548 -0.9216 24 1 -0.3634 -1.0254 0.0670 25 1 1.8933 -0.5138 -0.8900 26 1 2.8895 1.5275 -0.6776 27 1 1.2436 2.1095 -0.3303 28 1 2.3502 1.7183 1.0079 29 1 -0.9812 1.0288 5.0889 30 1 -0.9269 -0.9671 2.7443 31 1 -0.2175 -1.8078 1.3409 32 1 0.7479 -2.2591 4.0873 33 1 0.6402 -3.9462 1.7399 34 1 1.3454 -4.3523 3.3172 35 1 3.2142 -3.7381 1.9567 36 1 2.8969 -2.2964 2.9545 37 1 0.7241 -1.9637 -0.5603 38 1 1.4068 -3.5980 -0.3836 39 1 0.3005 -2.9570 0.8547 40 1 4.3606 -1.7052 0.5163 41 1 3.7930 -3.2751 -0.1016 42 1 3.3313 -1.7713 -0.9343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220423820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:00 Heat of formation + Delta-G solvation = 75.901546 kcal Electronic energy + Delta-G solvation = -20221.466049 eV Core-core repulsion = 17625.369223 eV Total energy + Delta-G solvation = -2596.096826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.12693 -37.42619 -35.97656 -33.82842 -31.69478 -29.87098 -28.84269 -28.52214 -26.98723 -25.90792 -23.37936 -22.08216 -21.15782 -19.09733 -18.74368 -17.49200 -16.55644 -16.40891 -15.78815 -15.34148 -14.90701 -14.64202 -14.49437 -14.13746 -13.88567 -13.52204 -13.27039 -12.95133 -12.82503 -12.75205 -12.57903 -12.53606 -12.45687 -12.34304 -12.08621 -11.86177 -11.70895 -11.47235 -11.01598 -10.98061 -10.63447 -10.32374 -10.03721 -9.06908 -8.42177 -8.00979 -5.95717 1.41892 1.47054 1.54512 2.47933 3.25092 3.34327 3.79417 3.97353 4.11542 4.23744 4.35400 4.45294 4.57144 4.63729 4.69469 4.71437 4.79796 4.86492 4.91034 4.99743 5.01365 5.12689 5.14768 5.17835 5.23757 5.27292 5.33449 5.40941 5.46857 5.52837 5.62420 5.73782 5.86678 5.91281 6.15629 6.26846 6.61498 6.69458 6.87972 7.08043 7.15984 7.58233 9.05590 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.011567 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.184412 B = 2420.118793 C = 3035.807817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.101 3.899 3 C -0.133 4.133 4 N -0.542 5.542 5 C 0.206 3.794 6 H -0.004 1.004 7 C -0.520 4.520 8 H 0.104 0.896 9 C 0.010 3.990 10 N -0.910 5.910 11 Si 0.937 3.063 12 H -0.263 1.263 13 H -0.288 1.288 14 H -0.292 1.292 15 C 0.042 3.958 16 N -0.708 5.708 17 C 0.058 3.942 18 C -0.148 4.148 19 C 0.105 3.895 20 C -0.219 4.219 21 C -0.126 4.126 22 H 0.117 0.883 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.254 0.746 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.332 0.668 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 -5.853 -8.386 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.008 4.008 3 C -0.190 4.190 4 N -0.267 5.267 5 C 0.098 3.902 6 H 0.014 0.986 7 C -0.558 4.558 8 H 0.121 0.879 9 C -0.189 4.189 10 N -0.550 5.550 11 Si 0.765 3.235 12 H -0.187 1.187 13 H -0.215 1.215 14 H -0.218 1.218 15 C -0.086 4.086 16 N -0.337 5.337 17 C -0.073 4.073 18 C -0.188 4.188 19 C 0.016 3.984 20 C -0.277 4.277 21 C -0.183 4.183 22 H 0.134 0.866 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.151 0.849 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.994 -5.995 -8.260 10.960 hybrid contribution -0.421 1.229 0.430 1.368 sum 3.574 -4.766 -7.830 9.838 Atomic orbital electron populations 1.24047 0.97728 1.03057 1.04430 1.21288 0.93171 0.94613 0.91679 1.21971 0.99534 0.95958 1.01551 1.62372 1.48739 1.10086 1.05492 1.19376 0.88184 0.94687 0.87996 0.98594 1.22373 1.29458 0.99796 1.04147 0.87859 1.25588 0.97985 0.99871 0.95496 1.70106 1.39782 1.37182 1.07925 0.85805 0.77767 0.81921 0.78029 1.18674 1.21491 1.21831 1.22998 0.99719 0.89601 0.96312 1.57883 1.49060 1.17912 1.08851 1.21402 0.91083 0.94972 0.99822 1.22393 1.00103 0.99128 0.97181 1.20781 0.95096 0.87631 0.94910 1.23738 1.00287 1.02009 1.01623 1.21882 0.96390 1.01504 0.98560 0.86577 0.94160 0.92717 0.91504 0.93126 0.93378 0.92461 0.93656 0.93269 0.89080 0.84923 0.89630 0.91191 0.89647 0.94113 0.91335 0.91526 0.90016 0.93293 0.91008 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.01 6.65 71.98 0.48 -8.53 16 2 C 0.10 3.70 2.12 44.92 0.10 3.79 16 3 C -0.13 -4.84 8.23 71.98 0.59 -4.24 16 4 N -0.54 -21.52 4.16 -804.72 -3.35 -24.87 16 5 C 0.21 9.62 1.64 43.28 0.07 9.69 16 6 H 0.00 -0.21 6.73 -2.38 -0.02 -0.22 16 7 C -0.52 -25.96 4.45 25.60 0.11 -25.84 16 8 H 0.10 4.94 2.70 -2.91 -0.01 4.93 16 9 C 0.01 0.51 5.03 84.66 0.43 0.93 16 10 N -0.91 -50.61 11.99 21.45 0.26 -50.35 16 11 Si 0.94 42.45 29.54 68.60 2.03 44.48 16 12 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 14 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 15 C 0.04 1.90 4.35 85.44 0.37 2.27 16 16 N -0.71 -29.06 6.41 -528.27 -3.38 -32.44 16 17 C 0.06 1.93 5.93 88.05 0.52 2.45 16 18 C -0.15 -4.81 5.05 30.38 0.15 -4.66 16 19 C 0.11 3.46 0.67 2.57 0.00 3.46 16 20 C -0.22 -6.71 5.93 71.98 0.43 -6.28 16 21 C -0.13 -3.48 8.14 71.98 0.59 -2.89 16 22 H 0.12 5.26 3.66 -15.18 -0.06 5.20 16 23 H 0.04 1.36 8.14 -2.38 -0.02 1.35 16 24 H 0.05 2.05 3.62 -2.39 -0.01 2.04 16 25 H 0.07 2.21 5.43 -2.39 -0.01 2.20 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.70 7.39 -2.39 -0.02 1.68 16 28 H 0.06 2.41 6.33 -2.39 -0.02 2.40 16 29 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.05 2.60 6.34 -2.39 -0.02 2.59 16 31 H 0.09 3.78 1.88 -2.39 0.00 3.77 16 32 H 0.33 14.89 8.15 -89.70 -0.73 14.16 16 33 H 0.09 2.67 5.03 -2.39 -0.01 2.66 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 2.29 7.53 -2.39 -0.02 2.27 16 36 H 0.04 1.56 7.19 -2.39 -0.02 1.55 16 37 H 0.07 2.16 3.93 -2.38 -0.01 2.15 16 38 H 0.07 1.69 7.97 -2.39 -0.02 1.67 16 39 H 0.08 2.75 2.68 -2.39 -0.01 2.75 16 40 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.63 7.84 -2.38 -0.02 1.61 16 42 H 0.05 1.40 6.70 -2.39 -0.02 1.38 16 Total: -1.00 -54.26 273.58 -0.34 -54.60 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.27 Total: 38.44 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 3.84 Total: -29.85 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -6.48 Total: -107.67 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -54.26 -0.34 -54.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220423820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.503 kcal (2) G-P(sol) polarization free energy of solvation -54.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds