Wall clock time and date at job start Mon Mar 30 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47477 * 2 1 4 4 N 1.46900 * 109.47383 * 180.02562 * 3 2 1 5 5 C 1.40020 * 110.99948 * 62.02632 * 4 3 2 6 6 C 1.54194 * 112.08030 * 188.10092 * 5 4 3 7 7 H 1.09003 * 109.57443 * 41.00563 * 6 5 4 8 8 C 1.50705 * 109.57640 * 161.38038 * 6 5 4 9 9 H 1.08004 * 119.99476 * 54.67028 * 8 6 5 10 10 C 1.37876 * 120.00050 * 234.67928 * 8 6 5 11 11 N 1.31521 * 119.99697 * 173.52328 * 10 8 6 12 12 Si 1.86800 * 120.00166 * 353.52243 * 10 8 6 13 13 H 1.48503 * 109.47234 * 85.08246 * 12 10 8 14 14 H 1.48501 * 109.46975 * 205.07791 * 12 10 8 15 15 H 1.48501 * 109.47025 * 325.07929 * 12 10 8 16 16 N 1.44572 * 108.85648 * 281.18941 * 6 5 4 17 17 C 1.46903 * 111.00398 * 220.34326 * 16 6 5 18 18 C 1.48070 * 113.85503 * 94.22610 * 16 6 5 19 19 C 1.53698 * 112.47150 * 318.31722 * 18 16 6 20 20 H 1.09005 * 108.95278 * 79.23032 * 19 18 16 21 21 C 1.52994 * 108.95742 * 197.96626 * 19 18 16 22 22 C 1.47903 * 111.00175 * 189.99776 * 4 3 2 23 23 H 1.08996 * 109.47138 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46720 * 300.00249 * 1 2 3 25 25 H 1.08997 * 109.47044 * 59.99489 * 1 2 3 26 26 H 1.09003 * 109.47245 * 240.00280 * 2 1 3 27 27 H 1.09003 * 109.47226 * 120.00087 * 2 1 3 28 28 H 1.09003 * 109.46654 * 59.99918 * 3 2 1 29 29 H 1.09003 * 109.46964 * 300.00248 * 3 2 1 30 30 H 1.08997 * 108.95741 * 308.77184 * 5 4 3 31 31 H 1.08994 * 108.95841 * 67.51477 * 5 4 3 32 32 H 0.96998 * 119.99626 * 179.97438 * 11 10 8 33 33 H 1.08992 * 109.46977 * 299.03151 * 17 16 6 34 34 H 1.08995 * 109.46469 * 59.03084 * 17 16 6 35 35 H 1.09000 * 109.47208 * 179.02772 * 17 16 6 36 36 H 1.08997 * 108.88072 * 79.08923 * 18 16 6 37 37 H 1.09001 * 108.88339 * 197.54657 * 18 16 6 38 38 H 1.09000 * 109.47133 * 59.99931 * 21 19 18 39 39 H 1.09003 * 109.47029 * 180.02562 * 21 19 18 40 40 H 1.09000 * 109.47333 * 300.00042 * 21 19 18 41 41 H 1.09005 * 109.62872 * 34.07952 * 22 4 3 42 42 H 1.08994 * 109.64000 * 273.48369 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0103 0.8295 -1.1554 6 6 5.5387 0.6356 -1.0918 7 1 5.8244 0.3111 -0.0912 8 6 5.9585 -0.4022 -2.1008 9 1 5.6846 -0.2874 -3.1392 10 6 6.6919 -1.4980 -1.6983 11 7 6.9493 -2.4661 -2.5505 12 14 7.3201 -1.6078 0.0575 13 1 6.2604 -2.1781 0.9277 14 1 8.5195 -2.4824 0.1004 15 1 7.6797 -0.2503 0.5403 16 7 6.1824 1.8941 -1.3951 17 6 7.3616 1.6905 -2.2472 18 6 6.5248 2.6954 -0.1980 19 6 5.4087 2.6794 0.8586 20 1 5.4625 1.7444 1.4162 21 6 5.6219 3.8466 1.8245 22 6 4.0393 2.8023 0.2391 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.5345 -0.1439 -1.2746 31 1 3.7688 1.4495 -2.0187 32 1 7.4657 -3.2369 -2.2674 33 1 8.0830 1.0621 -1.7249 34 1 7.0600 1.2037 -3.1745 35 1 7.8167 2.6546 -2.4742 36 1 7.4363 2.2949 0.2456 37 1 6.7067 3.7258 -0.5034 38 1 5.5919 4.7856 1.2718 39 1 4.8345 3.8429 2.5782 40 1 6.5913 3.7425 2.3118 41 1 3.3769 3.3391 0.9183 42 1 4.1119 3.3391 -0.7067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220424796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:23 Heat of formation + Delta-G solvation = 6.526780 kcal Electronic energy + Delta-G solvation = -18989.245611 eV Core-core repulsion = 16390.140470 eV Total energy + Delta-G solvation = -2599.105141 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.14346 -36.11264 -34.36604 -32.61395 -32.03759 -28.79302 -26.69241 -26.31022 -25.12883 -23.38260 -22.43260 -20.49223 -19.78392 -18.43083 -17.04863 -15.54515 -15.24366 -14.88250 -14.78058 -14.17563 -13.85053 -13.55083 -13.13450 -12.83845 -12.55412 -12.46482 -12.06281 -11.95703 -11.63174 -11.55216 -11.32310 -11.25755 -11.01331 -10.85854 -10.58048 -10.34573 -10.19704 -10.09501 -9.94566 -9.77592 -9.63105 -9.01071 -8.62957 -7.53249 -7.02225 -6.14766 -4.13285 3.26688 3.33732 3.37002 4.36957 4.46247 4.88426 5.19164 5.21820 5.29441 5.35142 5.42913 5.58487 5.66339 5.77217 5.83720 5.90649 5.98284 6.01720 6.08052 6.14548 6.18966 6.21497 6.37199 6.39691 6.44837 6.47738 6.53221 6.58213 6.59557 6.76600 6.81819 6.88354 7.25949 7.32641 7.49189 7.80702 8.09869 8.18029 8.40603 8.72599 8.91811 9.49410 10.97545 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.010917 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.782655 B = 2564.075867 C = 3482.641897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.065 3.935 4 N -0.556 5.556 5 C 0.083 3.917 6 C 0.188 3.812 7 H 0.023 0.977 8 C -0.510 4.510 9 H 0.078 0.922 10 C 0.078 3.922 11 N -0.893 5.893 12 Si 0.875 3.125 13 H -0.273 1.273 14 H -0.291 1.291 15 H -0.271 1.271 16 N -0.558 5.558 17 C 0.063 3.937 18 C 0.065 3.935 19 C -0.094 4.094 20 H 0.075 0.925 21 C -0.140 4.140 22 C 0.080 3.920 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.015 0.985 34 H 0.081 0.919 35 H 0.028 0.972 36 H 0.019 0.981 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 9.215 6.945 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.063 4.063 4 N -0.280 5.280 5 C -0.047 4.047 6 C 0.081 3.919 7 H 0.041 0.959 8 C -0.549 4.549 9 H 0.096 0.904 10 C -0.126 4.126 11 N -0.530 5.530 12 Si 0.703 3.297 13 H -0.199 1.199 14 H -0.217 1.217 15 H -0.196 1.196 16 N -0.283 5.283 17 C -0.085 4.085 18 C -0.063 4.063 19 C -0.113 4.113 20 H 0.094 0.906 21 C -0.198 4.198 22 C -0.047 4.047 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.656 9.010 7.020 13.220 hybrid contribution 0.805 -0.209 0.739 1.112 sum -5.851 8.802 7.759 13.111 Atomic orbital electron populations 1.21723 0.96251 1.01356 1.01211 1.21636 0.94670 0.96997 1.03280 1.22032 0.88067 0.96674 0.99539 1.59373 1.05978 1.20353 1.42277 1.21244 0.97525 0.97632 0.88275 1.19502 0.89877 0.86425 0.96082 0.95944 1.20917 1.34087 1.04012 0.95907 0.90391 1.25038 0.95505 0.95189 0.96823 1.69899 1.39460 1.08501 1.35145 0.86903 0.78827 0.77960 0.86056 1.19868 1.21708 1.19587 1.61182 1.27342 1.22673 1.17138 1.21943 0.90882 0.96937 0.98737 1.22361 0.95409 0.97608 0.90876 1.20996 0.94933 0.99161 0.96201 0.90642 1.21824 1.01173 0.98064 0.98753 1.21708 0.94586 0.89021 0.99372 0.92824 0.93167 0.93076 0.91098 0.91391 0.91901 0.95680 0.90848 0.96730 0.92546 0.96634 0.90067 0.95348 0.96242 0.92641 0.92899 0.92816 0.93072 0.92251 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.13 -1.90 5.73 -26.73 -0.15 -2.05 16 3 C 0.06 0.99 4.94 -3.82 -0.02 0.97 16 4 N -0.56 -10.25 4.11 -239.76 -0.99 -11.24 16 5 C 0.08 1.78 4.30 -6.75 -0.03 1.75 16 6 C 0.19 4.48 1.90 -69.49 -0.13 4.35 16 7 H 0.02 0.58 3.69 -51.93 -0.19 0.38 16 8 C -0.51 -13.91 6.22 -34.44 -0.21 -14.12 16 9 H 0.08 2.32 7.65 -52.48 -0.40 1.92 16 10 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 11 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 12 Si 0.87 21.97 26.91 -169.99 -4.57 17.39 16 13 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.27 -6.73 6.85 56.52 0.39 -6.34 16 16 N -0.56 -12.20 4.19 -235.89 -0.99 -13.19 16 17 C 0.06 1.37 8.48 60.07 0.51 1.88 16 18 C 0.07 1.24 4.85 -2.82 -0.01 1.22 16 19 C -0.09 -1.59 2.25 -91.36 -0.21 -1.80 16 20 H 0.08 1.46 7.23 -51.93 -0.38 1.08 16 21 C -0.14 -1.83 8.85 37.15 0.33 -1.50 16 22 C 0.08 1.34 4.85 -4.37 -0.02 1.31 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.17 6.26 -51.93 -0.33 0.85 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.86 7.81 -51.93 -0.41 0.45 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 1.64 5.59 -51.93 -0.29 1.35 16 31 H 0.01 0.33 8.06 -51.93 -0.42 -0.09 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.02 0.36 8.02 -51.93 -0.42 -0.06 16 34 H 0.08 1.91 6.48 -51.93 -0.34 1.58 16 35 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 37 H 0.06 0.95 7.95 -51.93 -0.41 0.53 16 38 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 39 H 0.05 0.63 8.02 -51.93 -0.42 0.22 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.85 7.18 -51.93 -0.37 0.48 16 42 H 0.05 0.83 7.57 -51.93 -0.39 0.43 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -28.78 310.92 -8.47 -37.25 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.70 Total: -1.82 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 0.32 Total: -7.25 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -1.20 Total: -50.26 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.57 Total: 17.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.78 -8.47 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220424796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.778 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds