Wall clock time and date at job start Mon Mar 30 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47477 * 2 1 4 4 N 1.46900 * 109.47383 * 180.02562 * 3 2 1 5 5 C 1.40020 * 110.99948 * 62.02632 * 4 3 2 6 6 C 1.54194 * 112.08030 * 188.10092 * 5 4 3 7 7 H 1.09003 * 109.57443 * 41.00563 * 6 5 4 8 8 C 1.50705 * 109.57640 * 161.38038 * 6 5 4 9 9 H 1.08004 * 119.99476 * 54.67028 * 8 6 5 10 10 C 1.37876 * 120.00050 * 234.67928 * 8 6 5 11 11 N 1.31521 * 119.99697 * 173.52328 * 10 8 6 12 12 Si 1.86800 * 120.00166 * 353.52243 * 10 8 6 13 13 H 1.48503 * 109.47234 * 85.08246 * 12 10 8 14 14 H 1.48501 * 109.46975 * 205.07791 * 12 10 8 15 15 H 1.48501 * 109.47025 * 325.07929 * 12 10 8 16 16 N 1.44572 * 108.85648 * 281.18941 * 6 5 4 17 17 C 1.46903 * 111.00398 * 220.34326 * 16 6 5 18 18 C 1.48070 * 113.85503 * 94.22610 * 16 6 5 19 19 C 1.53698 * 112.47150 * 318.31722 * 18 16 6 20 20 H 1.09005 * 108.95278 * 79.23032 * 19 18 16 21 21 C 1.52994 * 108.95742 * 197.96626 * 19 18 16 22 22 C 1.47903 * 111.00175 * 189.99776 * 4 3 2 23 23 H 1.08996 * 109.47138 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46720 * 300.00249 * 1 2 3 25 25 H 1.08997 * 109.47044 * 59.99489 * 1 2 3 26 26 H 1.09003 * 109.47245 * 240.00280 * 2 1 3 27 27 H 1.09003 * 109.47226 * 120.00087 * 2 1 3 28 28 H 1.09003 * 109.46654 * 59.99918 * 3 2 1 29 29 H 1.09003 * 109.46964 * 300.00248 * 3 2 1 30 30 H 1.08997 * 108.95741 * 308.77184 * 5 4 3 31 31 H 1.08994 * 108.95841 * 67.51477 * 5 4 3 32 32 H 0.96998 * 119.99626 * 179.97438 * 11 10 8 33 33 H 1.08992 * 109.46977 * 299.03151 * 17 16 6 34 34 H 1.08995 * 109.46469 * 59.03084 * 17 16 6 35 35 H 1.09000 * 109.47208 * 179.02772 * 17 16 6 36 36 H 1.08997 * 108.88072 * 79.08923 * 18 16 6 37 37 H 1.09001 * 108.88339 * 197.54657 * 18 16 6 38 38 H 1.09000 * 109.47133 * 59.99931 * 21 19 18 39 39 H 1.09003 * 109.47029 * 180.02562 * 21 19 18 40 40 H 1.09000 * 109.47333 * 300.00042 * 21 19 18 41 41 H 1.09005 * 109.62872 * 34.07952 * 22 4 3 42 42 H 1.08994 * 109.64000 * 273.48369 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0103 0.8295 -1.1554 6 6 5.5387 0.6356 -1.0918 7 1 5.8244 0.3111 -0.0912 8 6 5.9585 -0.4022 -2.1008 9 1 5.6846 -0.2874 -3.1392 10 6 6.6919 -1.4980 -1.6983 11 7 6.9493 -2.4661 -2.5505 12 14 7.3201 -1.6078 0.0575 13 1 6.2604 -2.1781 0.9277 14 1 8.5195 -2.4824 0.1004 15 1 7.6797 -0.2503 0.5403 16 7 6.1824 1.8941 -1.3951 17 6 7.3616 1.6905 -2.2472 18 6 6.5248 2.6954 -0.1980 19 6 5.4087 2.6794 0.8586 20 1 5.4625 1.7444 1.4162 21 6 5.6219 3.8466 1.8245 22 6 4.0393 2.8023 0.2391 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.5345 -0.1439 -1.2746 31 1 3.7688 1.4495 -2.0187 32 1 7.4657 -3.2369 -2.2674 33 1 8.0830 1.0621 -1.7249 34 1 7.0600 1.2037 -3.1745 35 1 7.8167 2.6546 -2.4742 36 1 7.4363 2.2949 0.2456 37 1 6.7067 3.7258 -0.5034 38 1 5.5919 4.7856 1.2718 39 1 4.8345 3.8429 2.5782 40 1 6.5913 3.7425 2.3118 41 1 3.3769 3.3391 0.9183 42 1 4.1119 3.3391 -0.7067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220424796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:23 Heat of formation + Delta-G solvation = -12.837043 kcal Electronic energy + Delta-G solvation = -18990.085290 eV Core-core repulsion = 16390.140470 eV Total energy + Delta-G solvation = -2599.944820 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69844 -37.64392 -35.89567 -34.24802 -33.71807 -30.52220 -28.28660 -27.57850 -26.73480 -25.11745 -23.79307 -21.91934 -21.27736 -20.07644 -19.13661 -17.14264 -16.75628 -16.35803 -16.22859 -16.05213 -15.32031 -15.15514 -14.87959 -14.28334 -14.00584 -13.80249 -13.53382 -13.24572 -13.19122 -13.00667 -12.88747 -12.78808 -12.59709 -12.20180 -12.09609 -11.96246 -11.75286 -11.63624 -11.51795 -11.31725 -11.17420 -11.03542 -10.82318 -9.01559 -8.82261 -8.36288 -6.37100 1.23949 1.25782 1.33966 2.24734 2.91479 3.10886 3.43261 3.92702 4.04787 4.12331 4.20727 4.31276 4.43516 4.49874 4.56428 4.67667 4.70276 4.72497 4.78842 4.80876 4.85387 4.87340 4.94699 4.96577 5.01433 5.03913 5.21481 5.23567 5.31132 5.34604 5.39154 5.40533 5.44502 5.53241 5.55053 6.10491 6.41373 6.46330 6.54566 6.69965 6.87126 7.28220 8.79902 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.010917 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.782655 B = 2564.075867 C = 3482.641897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.066 3.934 4 N -0.568 5.568 5 C 0.102 3.898 6 C 0.193 3.807 7 H 0.012 0.988 8 C -0.504 4.504 9 H 0.039 0.961 10 C 0.029 3.971 11 N -0.936 5.936 12 Si 0.932 3.068 13 H -0.267 1.267 14 H -0.285 1.285 15 H -0.266 1.266 16 N -0.563 5.563 17 C 0.070 3.930 18 C 0.062 3.938 19 C -0.093 4.093 20 H 0.050 0.950 21 C -0.131 4.131 22 C 0.082 3.918 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.027 0.973 30 H 0.055 0.945 31 H 0.000 1.000 32 H 0.267 0.733 33 H -0.005 1.005 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.008 0.992 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 11.502 9.332 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.061 4.061 4 N -0.292 5.292 5 C -0.028 4.028 6 C 0.086 3.914 7 H 0.029 0.971 8 C -0.543 4.543 9 H 0.057 0.943 10 C -0.170 4.170 11 N -0.576 5.576 12 Si 0.758 3.242 13 H -0.193 1.193 14 H -0.211 1.211 15 H -0.191 1.191 16 N -0.288 5.288 17 C -0.078 4.078 18 C -0.065 4.065 19 C -0.113 4.113 20 H 0.068 0.932 21 C -0.189 4.189 22 C -0.044 4.044 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.018 0.982 32 H 0.076 0.924 33 H 0.014 0.986 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.026 0.974 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.622 11.319 9.417 16.580 hybrid contribution 1.075 -0.869 -0.074 1.385 sum -6.546 10.451 9.343 15.471 Atomic orbital electron populations 1.21663 0.93609 1.02147 1.02363 1.21617 0.96983 0.96516 1.01473 1.22129 0.85931 0.97120 1.00897 1.59326 1.08022 1.21662 1.40221 1.20835 0.95759 0.97010 0.89225 1.19365 0.91635 0.86463 0.93975 0.97069 1.21032 1.33313 1.05006 0.94947 0.94297 1.25697 0.95946 0.94952 1.00401 1.70016 1.41010 1.09406 1.37142 0.85981 0.78474 0.78073 0.81701 1.19272 1.21139 1.19122 1.61154 1.27271 1.21509 1.18825 1.21835 0.90543 0.98148 0.97290 1.22540 0.95892 0.97979 0.90116 1.21022 0.94381 0.99873 0.95989 0.93186 1.21753 1.02141 0.96717 0.98248 1.21792 0.95084 0.87930 0.99610 0.92320 0.91286 0.92576 0.93887 0.92248 0.89077 0.95461 0.92651 0.98207 0.92402 0.98627 0.92870 0.91831 0.97397 0.90058 0.91259 0.91013 0.92660 0.88865 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.91 71.98 0.71 -2.28 16 2 C -0.13 -3.67 5.73 30.59 0.18 -3.49 16 3 C 0.07 1.88 4.94 86.30 0.43 2.31 16 4 N -0.57 -20.13 4.11 -912.46 -3.75 -23.88 16 5 C 0.10 4.44 4.30 87.95 0.38 4.82 16 6 C 0.19 9.34 1.90 45.01 0.09 9.43 16 7 H 0.01 0.59 3.69 -2.39 -0.01 0.58 16 8 C -0.50 -28.64 6.22 25.60 0.16 -28.48 16 9 H 0.04 2.47 7.65 -2.91 -0.02 2.45 16 10 C 0.03 1.70 5.47 84.65 0.46 2.16 16 11 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 12 Si 0.93 46.14 26.91 68.60 1.85 47.99 16 13 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 15 H -0.27 -12.88 6.85 99.48 0.68 -12.20 16 16 N -0.56 -24.40 4.19 -900.21 -3.77 -28.17 16 17 C 0.07 3.08 8.48 127.69 1.08 4.16 16 18 C 0.06 2.22 4.85 86.31 0.42 2.64 16 19 C -0.09 -2.91 2.25 -11.27 -0.03 -2.93 16 20 H 0.05 1.83 7.23 -2.38 -0.02 1.81 16 21 C -0.13 -2.85 8.85 71.98 0.64 -2.21 16 22 C 0.08 2.50 4.85 85.40 0.41 2.91 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 1.45 6.26 -2.39 -0.01 1.44 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.09 2.11 7.81 -2.39 -0.02 2.09 16 29 H 0.03 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.06 2.58 5.59 -2.39 -0.01 2.56 16 31 H 0.00 0.00 8.06 -2.39 -0.02 -0.02 16 32 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.00 -0.24 8.02 -2.39 -0.02 -0.25 16 34 H 0.05 2.60 6.48 -2.39 -0.02 2.59 16 35 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 36 H 0.01 0.30 8.03 -2.39 -0.02 0.28 16 37 H 0.08 2.50 7.95 -2.39 -0.02 2.48 16 38 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 39 H 0.07 1.34 8.02 -2.39 -0.02 1.32 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 2.22 7.18 -2.38 -0.02 2.20 16 42 H 0.04 1.20 7.57 -2.39 -0.02 1.18 16 Total: -1.00 -64.37 310.92 0.47 -63.90 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.93 Total: 8.70 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.93 Total: -10.97 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -7.23 Total: -109.62 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.85 Total: 47.99 kcal Total: -64.37 0.47 -63.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220424796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.060 kcal (2) G-P(sol) polarization free energy of solvation -64.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds