Wall clock time and date at job start Mon Mar 30 2020 03:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46924 * 2 1 4 4 N 1.46896 * 109.46951 * 179.97438 * 3 2 1 5 5 C 1.44257 * 111.00406 * 297.80091 * 4 3 2 6 6 C 1.54253 * 108.64476 * 219.85034 * 5 4 3 7 7 H 1.09002 * 108.99120 * 42.01525 * 6 5 4 8 8 C 1.52996 * 108.99479 * 160.76788 * 6 5 4 9 9 C 1.46135 * 111.89772 * 281.39277 * 6 5 4 10 10 N 1.48106 * 112.19855 * 60.86907 * 9 6 5 11 11 C 1.46892 * 111.00045 * 156.47822 * 10 9 6 12 12 C 1.44259 * 109.97441 * 279.70667 * 10 9 6 13 13 H 1.09006 * 108.78838 * 333.16991 * 12 10 9 14 14 C 1.50700 * 108.86925 * 214.69426 * 12 10 9 15 15 H 1.08001 * 119.99388 * 300.15279 * 14 12 10 16 16 C 1.37871 * 120.00019 * 119.87739 * 14 12 10 17 17 N 1.31509 * 120.00264 * 354.53822 * 16 14 12 18 18 Si 1.86801 * 119.99781 * 174.54593 * 16 14 12 19 19 H 1.48496 * 109.47435 * 59.99868 * 18 16 14 20 20 H 1.48504 * 109.46850 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47234 * 299.99484 * 18 16 14 22 22 C 1.48192 * 110.99910 * 66.04534 * 4 3 2 23 23 H 1.09004 * 109.46976 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47199 * 299.99460 * 1 2 3 25 25 H 1.09002 * 109.47187 * 60.00119 * 1 2 3 26 26 H 1.09000 * 109.47199 * 240.00540 * 2 1 3 27 27 H 1.09002 * 109.47187 * 119.99881 * 2 1 3 28 28 H 1.09000 * 109.46741 * 60.00260 * 3 2 1 29 29 H 1.08990 * 109.47201 * 300.00334 * 3 2 1 30 30 H 1.09001 * 109.60314 * 339.60232 * 5 4 3 31 31 H 1.09007 * 109.60584 * 100.09882 * 5 4 3 32 32 H 1.09005 * 109.46924 * 60.00170 * 8 6 5 33 33 H 1.09005 * 109.47264 * 179.97438 * 8 6 5 34 34 H 1.08993 * 109.47661 * 299.99973 * 8 6 5 35 35 H 1.09000 * 108.93395 * 181.56403 * 9 6 5 36 36 H 1.08994 * 108.94056 * 300.25509 * 9 6 5 37 37 H 1.09003 * 109.47075 * 189.03380 * 11 10 9 38 38 H 1.09002 * 109.47262 * 309.03430 * 11 10 9 39 39 H 1.09008 * 109.47413 * 69.03985 * 11 10 9 40 40 H 0.97001 * 120.00538 * 185.01603 * 17 16 14 41 41 H 1.09001 * 108.81875 * 70.83152 * 22 4 3 42 42 H 1.08998 * 108.74294 * 312.46955 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0255 0.8147 1.1922 6 6 5.2496 1.6161 1.6809 7 1 5.0339 2.6810 1.5945 8 6 5.5101 1.2804 3.1507 9 6 6.4480 1.3088 0.9031 10 7 6.2851 1.6416 -0.5308 11 6 7.5884 1.8630 -1.1712 12 6 5.5517 0.5946 -1.1994 13 1 5.7107 -0.3419 -0.6648 14 6 6.0802 0.4494 -2.6033 15 1 6.0385 1.2860 -3.2851 16 6 6.6219 -0.7495 -3.0154 17 7 6.7763 -1.7318 -2.1547 18 14 7.1369 -0.9787 -4.7963 19 1 8.1765 0.0231 -5.1439 20 1 7.6863 -2.3459 -4.9807 21 1 5.9577 -0.7953 -5.6801 22 6 4.0406 0.8807 -1.2634 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.2578 0.8112 1.9660 31 1 4.3248 -0.2088 0.9659 32 1 5.7060 0.2128 3.2503 33 1 6.3745 1.8427 3.5041 34 1 4.6358 1.5463 3.7446 35 1 7.2862 1.8780 1.3053 36 1 6.6666 0.2450 0.9954 37 1 7.4372 2.2601 -2.1751 38 1 8.1665 2.5750 -0.5821 39 1 8.1287 0.9182 -1.2319 40 1 7.2234 -2.5487 -2.4260 41 1 3.8506 1.5886 -2.0702 42 1 3.5155 -0.0493 -1.4814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220424880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:26 Heat of formation + Delta-G solvation = 4.419020 kcal Electronic energy + Delta-G solvation = -18934.806754 eV Core-core repulsion = 16335.610214 eV Total energy + Delta-G solvation = -2599.196541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.90889 -36.08276 -34.31351 -32.29145 -31.87268 -28.40141 -26.58895 -26.07353 -24.84176 -23.48075 -22.45016 -20.79532 -19.19582 -18.59926 -16.46327 -15.67078 -15.13942 -14.73341 -14.30233 -14.01647 -13.62169 -13.37139 -12.95779 -12.90449 -12.54348 -12.24605 -11.98858 -11.65816 -11.50163 -11.36054 -11.13410 -11.11746 -10.89145 -10.80148 -10.62754 -10.33017 -10.17170 -10.06655 -9.93172 -9.71075 -9.43887 -8.88217 -8.61216 -7.28471 -6.78641 -6.10847 -4.14745 3.26563 3.31797 3.34733 4.34221 4.64365 5.11933 5.22958 5.25745 5.32806 5.47225 5.57304 5.59648 5.80208 5.88677 5.97478 6.04105 6.06904 6.13589 6.20222 6.24025 6.33832 6.39421 6.48748 6.54238 6.56144 6.58556 6.69407 6.82066 6.82510 6.95516 7.08103 7.20849 7.35964 7.69904 7.77026 7.89412 8.01145 8.16622 8.60672 8.79353 9.03796 9.49863 10.96130 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.009169 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.628123 B = 3053.149458 C = 4032.230704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.167 4.167 3 C 0.063 3.937 4 N -0.545 5.545 5 C 0.079 3.921 6 C -0.080 4.080 7 H 0.077 0.923 8 C -0.144 4.144 9 C 0.062 3.938 10 N -0.526 5.526 11 C 0.064 3.936 12 C 0.190 3.810 13 H 0.047 0.953 14 C -0.514 4.514 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.086 3.914 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.024 0.976 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.058 0.942 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 3.705 6.653 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C -0.066 4.066 4 N -0.267 5.267 5 C -0.050 4.050 6 C -0.099 4.099 7 H 0.095 0.905 8 C -0.203 4.203 9 C -0.067 4.067 10 N -0.250 5.250 11 C -0.084 4.084 12 C 0.082 3.918 13 H 0.064 0.936 14 C -0.553 4.553 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.041 4.041 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.082 4.384 6.608 9.994 hybrid contribution 0.510 -1.923 -0.976 2.216 sum -5.573 2.461 5.632 8.296 Atomic orbital electron populations 1.21677 0.96163 1.01058 1.01342 1.22276 0.95826 1.00072 1.02433 1.22194 0.88661 0.94305 1.01437 1.60699 1.04548 1.58469 1.03028 1.21666 0.95751 0.95972 0.91583 1.20102 0.95522 1.01409 0.92899 0.90457 1.21846 1.00765 1.01139 0.96510 1.21008 0.96204 0.98203 0.91244 1.61807 1.17131 1.46217 0.99876 1.21907 0.89782 0.98199 0.98519 1.19306 0.88092 0.89837 0.94536 0.93563 1.21127 1.40130 0.97022 0.97057 0.92228 1.25005 0.95331 0.95755 0.97505 1.69875 1.42396 1.06206 1.34664 0.86634 0.78991 0.77183 0.85141 1.20066 1.21356 1.20052 1.22723 0.97205 0.95832 0.88298 0.93321 0.93127 0.92885 0.91420 0.92367 0.91943 0.91528 0.92898 0.94582 0.93214 0.93079 0.93191 0.93454 0.95754 0.91783 0.95755 0.95678 0.92691 0.92389 0.95926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.17 -2.51 5.48 -26.73 -0.15 -2.66 16 3 C 0.06 0.99 5.09 -3.82 -0.02 0.97 16 4 N -0.55 -10.43 4.32 -234.26 -1.01 -11.45 16 5 C 0.08 1.44 3.66 -4.58 -0.02 1.42 16 6 C -0.08 -1.40 2.59 -93.22 -0.24 -1.64 16 7 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 8 C -0.14 -2.05 9.00 37.16 0.33 -1.71 16 9 C 0.06 1.25 4.20 -6.42 -0.03 1.22 16 10 N -0.53 -12.08 4.65 -240.79 -1.12 -13.20 16 11 C 0.06 1.44 8.45 60.06 0.51 1.95 16 12 C 0.19 4.73 2.07 -69.79 -0.14 4.58 16 13 H 0.05 1.31 5.26 -51.93 -0.27 1.04 16 14 C -0.51 -13.74 5.63 -34.44 -0.19 -13.93 16 15 H 0.06 1.61 7.31 -52.49 -0.38 1.22 16 16 C 0.07 1.82 5.44 -17.82 -0.10 1.72 16 17 N -0.89 -25.39 12.59 55.43 0.70 -24.70 16 18 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.09 1.94 5.02 -2.62 -0.01 1.92 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.16 6.32 -51.93 -0.33 0.83 16 27 H 0.06 0.89 7.03 -51.93 -0.37 0.53 16 28 H 0.06 0.90 8.01 -51.93 -0.42 0.48 16 29 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 30 H 0.05 0.84 7.02 -51.93 -0.36 0.48 16 31 H 0.04 0.74 6.96 -51.93 -0.36 0.38 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.63 8.13 -51.93 -0.42 0.20 16 35 H 0.05 0.89 7.64 -51.93 -0.40 0.49 16 36 H 0.02 0.55 7.37 -51.93 -0.38 0.16 16 37 H 0.06 1.47 6.77 -51.93 -0.35 1.12 16 38 H 0.02 0.47 7.83 -51.93 -0.41 0.07 16 39 H 0.02 0.61 7.76 -51.92 -0.40 0.21 16 40 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 41 H 0.06 1.34 7.97 -51.93 -0.41 0.93 16 42 H 0.02 0.52 5.99 -51.93 -0.31 0.21 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -27.63 311.58 -9.12 -36.75 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.67 Total: -0.55 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 0.31 Total: -7.53 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -1.43 Total: -49.35 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.63 -9.12 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220424880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.166 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds