Wall clock time and date at job start Mon Mar 30 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46924 * 2 1 4 4 N 1.46896 * 109.46951 * 179.97438 * 3 2 1 5 5 C 1.44257 * 111.00406 * 297.80091 * 4 3 2 6 6 C 1.54253 * 108.64476 * 219.85034 * 5 4 3 7 7 H 1.09002 * 108.99120 * 42.01525 * 6 5 4 8 8 C 1.52996 * 108.99479 * 160.76788 * 6 5 4 9 9 C 1.46135 * 111.89772 * 281.39277 * 6 5 4 10 10 N 1.48106 * 112.19855 * 60.86907 * 9 6 5 11 11 C 1.46892 * 111.00045 * 156.47822 * 10 9 6 12 12 C 1.44259 * 109.97441 * 279.70667 * 10 9 6 13 13 H 1.09006 * 108.78838 * 333.16991 * 12 10 9 14 14 C 1.50700 * 108.86925 * 214.69426 * 12 10 9 15 15 H 1.08001 * 119.99388 * 300.15279 * 14 12 10 16 16 C 1.37871 * 120.00019 * 119.87739 * 14 12 10 17 17 N 1.31509 * 120.00264 * 354.53822 * 16 14 12 18 18 Si 1.86801 * 119.99781 * 174.54593 * 16 14 12 19 19 H 1.48496 * 109.47435 * 59.99868 * 18 16 14 20 20 H 1.48504 * 109.46850 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47234 * 299.99484 * 18 16 14 22 22 C 1.48192 * 110.99910 * 66.04534 * 4 3 2 23 23 H 1.09004 * 109.46976 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47199 * 299.99460 * 1 2 3 25 25 H 1.09002 * 109.47187 * 60.00119 * 1 2 3 26 26 H 1.09000 * 109.47199 * 240.00540 * 2 1 3 27 27 H 1.09002 * 109.47187 * 119.99881 * 2 1 3 28 28 H 1.09000 * 109.46741 * 60.00260 * 3 2 1 29 29 H 1.08990 * 109.47201 * 300.00334 * 3 2 1 30 30 H 1.09001 * 109.60314 * 339.60232 * 5 4 3 31 31 H 1.09007 * 109.60584 * 100.09882 * 5 4 3 32 32 H 1.09005 * 109.46924 * 60.00170 * 8 6 5 33 33 H 1.09005 * 109.47264 * 179.97438 * 8 6 5 34 34 H 1.08993 * 109.47661 * 299.99973 * 8 6 5 35 35 H 1.09000 * 108.93395 * 181.56403 * 9 6 5 36 36 H 1.08994 * 108.94056 * 300.25509 * 9 6 5 37 37 H 1.09003 * 109.47075 * 189.03380 * 11 10 9 38 38 H 1.09002 * 109.47262 * 309.03430 * 11 10 9 39 39 H 1.09008 * 109.47413 * 69.03985 * 11 10 9 40 40 H 0.97001 * 120.00538 * 185.01603 * 17 16 14 41 41 H 1.09001 * 108.81875 * 70.83152 * 22 4 3 42 42 H 1.08998 * 108.74294 * 312.46955 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0255 0.8147 1.1922 6 6 5.2496 1.6161 1.6809 7 1 5.0339 2.6810 1.5945 8 6 5.5101 1.2804 3.1507 9 6 6.4480 1.3088 0.9031 10 7 6.2851 1.6416 -0.5308 11 6 7.5884 1.8630 -1.1712 12 6 5.5517 0.5946 -1.1994 13 1 5.7107 -0.3419 -0.6648 14 6 6.0802 0.4494 -2.6033 15 1 6.0385 1.2860 -3.2851 16 6 6.6219 -0.7495 -3.0154 17 7 6.7763 -1.7318 -2.1547 18 14 7.1369 -0.9787 -4.7963 19 1 8.1765 0.0231 -5.1439 20 1 7.6863 -2.3459 -4.9807 21 1 5.9577 -0.7953 -5.6801 22 6 4.0406 0.8807 -1.2634 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.2578 0.8112 1.9660 31 1 4.3248 -0.2088 0.9659 32 1 5.7060 0.2128 3.2503 33 1 6.3745 1.8427 3.5041 34 1 4.6358 1.5463 3.7446 35 1 7.2862 1.8780 1.3053 36 1 6.6666 0.2450 0.9954 37 1 7.4372 2.2601 -2.1751 38 1 8.1665 2.5750 -0.5821 39 1 8.1287 0.9182 -1.2319 40 1 7.2234 -2.5487 -2.4260 41 1 3.8506 1.5886 -2.0702 42 1 3.5155 -0.0493 -1.4814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220424880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:25 Heat of formation + Delta-G solvation = -13.660451 kcal Electronic energy + Delta-G solvation = -18935.590739 eV Core-core repulsion = 16335.610214 eV Total energy + Delta-G solvation = -2599.980525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53970 -37.65942 -35.95753 -34.04931 -33.41258 -30.16391 -28.22589 -27.51584 -26.55698 -25.21384 -23.89838 -22.23830 -20.87722 -20.25244 -18.50336 -17.28587 -16.86181 -16.29459 -15.93126 -15.55861 -15.20295 -14.91573 -14.58970 -14.39022 -14.08549 -13.93605 -13.42216 -13.08135 -12.96092 -12.91350 -12.69660 -12.63016 -12.50036 -12.31899 -12.23601 -12.07577 -11.71897 -11.60037 -11.48982 -11.24808 -11.21726 -10.88418 -10.69876 -8.88843 -8.67385 -8.20407 -6.30548 1.37289 1.38713 1.46554 2.35993 2.96384 3.27785 3.55844 4.00325 4.03026 4.09888 4.20624 4.43350 4.44189 4.59842 4.62529 4.72200 4.74964 4.75446 4.81894 4.84902 4.90644 4.92651 4.97307 5.04901 5.15310 5.17645 5.19641 5.29344 5.33526 5.36596 5.42181 5.48168 5.59709 5.62739 5.73932 5.98012 6.37713 6.59921 6.60512 6.89184 6.98471 7.37849 8.86451 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.009169 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.628123 B = 3053.149458 C = 4032.230704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.162 4.162 3 C 0.062 3.938 4 N -0.549 5.549 5 C 0.083 3.917 6 C -0.078 4.078 7 H 0.079 0.921 8 C -0.135 4.135 9 C 0.066 3.934 10 N -0.530 5.530 11 C 0.071 3.929 12 C 0.197 3.803 13 H 0.007 0.993 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.019 3.981 17 N -0.927 5.927 18 Si 0.954 3.046 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.100 3.900 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.002 0.998 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.065 0.935 36 H -0.006 1.006 37 H 0.054 0.946 38 H 0.057 0.943 39 H -0.007 1.007 40 H 0.262 0.738 41 H 0.047 0.953 42 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 5.150 7.639 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.201 4.201 3 C -0.066 4.066 4 N -0.271 5.271 5 C -0.046 4.046 6 C -0.097 4.097 7 H 0.097 0.903 8 C -0.194 4.194 9 C -0.062 4.062 10 N -0.253 5.253 11 C -0.077 4.077 12 C 0.088 3.912 13 H 0.024 0.976 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.180 4.180 17 N -0.566 5.566 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.028 4.028 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.012 0.988 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.012 0.988 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -7.097 5.847 7.602 11.931 hybrid contribution 0.814 -2.341 -1.235 2.769 sum -6.283 3.506 6.367 9.607 Atomic orbital electron populations 1.21626 0.93469 1.01891 1.02564 1.22185 0.98142 0.99054 1.00710 1.22321 0.86404 0.95025 1.02848 1.60687 1.06776 1.57794 1.01826 1.21700 0.96920 0.94092 0.91868 1.20101 0.93799 1.01139 0.94679 0.90300 1.21773 1.02563 1.01006 0.94036 1.21101 0.98556 0.96567 0.89990 1.61872 1.17071 1.45064 1.01327 1.21840 0.89707 0.97283 0.98856 1.19130 0.89845 0.88756 0.93420 0.97557 1.21350 1.40011 0.96942 0.97901 0.92740 1.25738 0.95509 0.95449 1.01318 1.70021 1.43461 1.06640 1.36509 0.85664 0.78866 0.77184 0.80380 1.19178 1.21156 1.19429 1.22340 0.95580 0.94831 0.90006 0.92764 0.91158 0.92365 0.94508 0.92808 0.89193 0.91354 0.89893 0.97988 0.93824 0.91645 0.90730 0.91619 0.98782 0.92696 0.92479 0.98809 0.92865 0.93419 0.97652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.91 71.98 0.71 -2.31 16 2 C -0.16 -4.73 5.48 30.60 0.17 -4.56 16 3 C 0.06 1.85 5.09 86.31 0.44 2.29 16 4 N -0.55 -20.68 4.32 -895.06 -3.87 -24.55 16 5 C 0.08 2.94 3.66 87.22 0.32 3.26 16 6 C -0.08 -2.61 2.59 -12.48 -0.03 -2.64 16 7 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 8 C -0.14 -3.48 9.00 71.98 0.65 -2.83 16 9 C 0.07 2.66 4.20 83.96 0.35 3.01 16 10 N -0.53 -24.60 4.65 -915.74 -4.26 -28.85 16 11 C 0.07 3.24 8.45 127.69 1.08 4.32 16 12 C 0.20 10.16 2.07 44.98 0.09 10.26 16 13 H 0.01 0.39 5.26 -2.38 -0.01 0.38 16 14 C -0.52 -28.83 5.63 25.60 0.14 -28.68 16 15 H 0.05 3.00 7.31 -2.91 -0.02 2.98 16 16 C 0.02 1.08 5.44 84.65 0.46 1.54 16 17 N -0.93 -54.80 12.59 21.44 0.27 -54.53 16 18 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 C 0.10 4.63 5.02 86.37 0.43 5.07 16 23 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.29 6.32 -2.39 -0.02 1.28 16 27 H 0.05 1.60 7.03 -2.39 -0.02 1.58 16 28 H 0.09 2.26 8.01 -2.39 -0.02 2.24 16 29 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 30 H 0.08 2.43 7.02 -2.39 -0.02 2.42 16 31 H 0.00 0.07 6.96 -2.38 -0.02 0.06 16 32 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 35 H 0.07 2.38 7.64 -2.39 -0.02 2.37 16 36 H -0.01 -0.29 7.37 -2.39 -0.02 -0.30 16 37 H 0.05 2.54 6.77 -2.39 -0.02 2.53 16 38 H 0.06 2.18 7.83 -2.39 -0.02 2.16 16 39 H -0.01 -0.35 7.76 -2.38 -0.02 -0.37 16 40 H 0.26 14.82 8.32 -92.71 -0.77 14.05 16 41 H 0.05 2.26 7.97 -2.39 -0.02 2.24 16 42 H 0.01 0.26 5.99 -2.39 -0.01 0.25 16 Total: -1.00 -61.72 311.58 -0.06 -61.77 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.95 Total: 11.56 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.82 Total: -11.29 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -7.85 Total: -107.93 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -61.72 -0.06 -61.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220424880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.112 kcal (2) G-P(sol) polarization free energy of solvation -61.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds