Wall clock time and date at job start Mon Mar 30 2020 03:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47489 * 2 1 4 4 N 1.46897 * 109.47472 * 180.02562 * 3 2 1 5 5 C 1.48068 * 111.00039 * 300.78891 * 4 3 2 6 6 C 1.50739 * 112.94433 * 192.22214 * 5 4 3 7 7 H 1.08999 * 109.64727 * 332.75826 * 6 5 4 8 8 C 1.52995 * 109.56026 * 212.48402 * 6 5 4 9 9 C 1.54515 * 108.94863 * 92.64554 * 6 5 4 10 10 N 1.40087 * 111.50791 * 283.99468 * 9 6 5 11 11 C 1.46894 * 111.00249 * 188.14845 * 10 9 6 12 12 C 1.47690 * 114.56691 * 61.45083 * 10 9 6 13 13 C 1.47742 * 111.00306 * 173.19004 * 4 3 2 14 14 H 1.08997 * 108.93039 * 205.52500 * 13 4 3 15 15 C 1.50707 * 108.99247 * 324.31457 * 13 4 3 16 16 H 1.08003 * 119.99508 * 87.51921 * 15 13 4 17 17 C 1.37873 * 120.00030 * 267.24902 * 15 13 4 18 18 N 1.31523 * 119.99769 * 0.27565 * 17 15 13 19 19 Si 1.86800 * 120.00000 * 180.27403 * 17 15 13 20 20 H 1.48497 * 109.47112 * 60.00229 * 19 17 15 21 21 H 1.48499 * 109.47021 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47219 * 300.00072 * 19 17 15 23 23 H 1.08997 * 109.47351 * 59.99935 * 1 2 3 24 24 H 1.08994 * 109.47464 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46827 * 300.00172 * 1 2 3 26 26 H 1.09005 * 109.47464 * 240.00025 * 2 1 3 27 27 H 1.08997 * 109.47351 * 120.00065 * 2 1 3 28 28 H 1.08996 * 109.46901 * 59.99670 * 3 2 1 29 29 H 1.09000 * 109.46795 * 299.99836 * 3 2 1 30 30 H 1.09007 * 108.79163 * 71.32493 * 5 4 3 31 31 H 1.09002 * 108.69809 * 313.05330 * 5 4 3 32 32 H 1.08999 * 109.47795 * 300.53342 * 8 6 5 33 33 H 1.08996 * 109.47067 * 60.53757 * 8 6 5 34 34 H 1.09003 * 109.47386 * 180.53126 * 8 6 5 35 35 H 1.09003 * 109.07802 * 163.47277 * 9 6 5 36 36 H 1.09001 * 109.07549 * 44.51492 * 9 6 5 37 37 H 1.09000 * 109.47648 * 295.31593 * 11 10 9 38 38 H 1.09006 * 109.47147 * 55.31403 * 11 10 9 39 39 H 1.09001 * 109.46952 * 175.31081 * 11 10 9 40 40 H 1.09000 * 109.73188 * 159.03409 * 12 10 9 41 41 H 1.09002 * 109.77696 * 38.35520 * 12 10 9 42 42 H 0.96998 * 119.99663 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0402 0.7347 1.1866 6 6 5.5174 0.9552 1.3900 7 1 5.9924 1.1628 0.4312 8 6 6.1414 -0.2963 2.0105 9 6 5.7192 2.1583 2.3384 10 7 5.4943 3.3743 1.6803 11 6 5.8740 4.5108 2.5301 12 6 4.1255 3.5426 1.1519 13 6 4.0385 2.8120 -0.1642 14 1 5.0336 2.7561 -0.6054 15 6 3.1333 3.5802 -1.0926 16 1 2.2767 4.1067 -0.6983 17 6 3.4019 3.6154 -2.4444 18 7 4.4451 2.9741 -2.9245 19 14 2.2844 4.5738 -3.5941 20 1 2.2713 6.0037 -3.1937 21 1 2.7865 4.4538 -4.9865 22 1 0.9065 4.0253 -3.5163 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.8575 -0.3335 1.0694 31 1 3.5077 1.0864 2.0703 32 1 5.6629 -0.5048 2.9674 33 1 5.9983 -1.1440 1.3404 34 1 7.2077 -0.1320 2.1657 35 1 6.7400 2.1435 2.7204 36 1 5.0259 2.0725 3.1751 37 1 5.2258 4.5423 3.4058 38 1 6.9100 4.3960 2.8489 39 1 5.7680 5.4375 1.9661 40 1 3.9175 4.6017 0.9995 41 1 3.4049 3.1233 1.8541 42 1 4.6338 2.9985 -3.8756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220425909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:12 Heat of formation + Delta-G solvation = 6.022643 kcal Electronic energy + Delta-G solvation = -19016.486169 eV Core-core repulsion = 16417.359167 eV Total energy + Delta-G solvation = -2599.127002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.12457 -35.80400 -33.87657 -32.99855 -31.49985 -28.42776 -26.77624 -26.09391 -24.92236 -23.59201 -21.99930 -20.56449 -19.74676 -18.47210 -16.24597 -15.39191 -15.09924 -14.52013 -14.45728 -14.28556 -13.95263 -13.70920 -12.90956 -12.59027 -12.23632 -12.22478 -12.10061 -11.79322 -11.63174 -11.42215 -11.28371 -11.00107 -10.89225 -10.77790 -10.56689 -10.35580 -10.21839 -10.03694 -9.88810 -9.54115 -9.14827 -8.92733 -8.42106 -7.60459 -6.67226 -5.95154 -4.01562 3.33249 3.39058 3.40633 4.42467 4.64215 5.00158 5.26225 5.40875 5.49990 5.60323 5.66159 5.76879 5.79237 5.84668 5.95398 5.96939 6.01919 6.12108 6.21920 6.22770 6.27285 6.34294 6.38847 6.43830 6.47963 6.51885 6.62174 6.68111 6.73940 6.95622 6.99548 7.11217 7.35119 7.59512 7.84879 7.94529 8.05637 8.23512 8.77873 8.84365 9.13458 9.61475 11.12343 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017087 B = 0.010410 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.273839 B = 2689.002230 C = 3636.404237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.075 3.925 4 N -0.531 5.531 5 C 0.064 3.936 6 C -0.095 4.095 7 H 0.095 0.905 8 C -0.136 4.136 9 C 0.086 3.914 10 N -0.556 5.556 11 C 0.035 3.965 12 C 0.051 3.949 13 C 0.206 3.794 14 H 0.087 0.913 15 C -0.521 4.521 16 H 0.049 0.951 17 C 0.081 3.919 18 N -0.866 5.866 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.002 0.998 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.006 0.994 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.004 0.996 37 H 0.012 0.988 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.013 0.987 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 -3.385 8.616 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.053 4.053 4 N -0.256 5.256 5 C -0.063 4.063 6 C -0.114 4.114 7 H 0.114 0.886 8 C -0.194 4.194 9 C -0.044 4.044 10 N -0.280 5.280 11 C -0.113 4.113 12 C -0.076 4.076 13 C 0.101 3.899 14 H 0.105 0.895 15 C -0.560 4.560 16 H 0.067 0.933 17 C -0.124 4.124 18 N -0.502 5.502 19 Si 0.712 3.288 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.020 0.980 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.032 0.968 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.275 -3.690 7.678 8.523 hybrid contribution -1.434 0.953 0.855 1.922 sum -1.158 -2.738 8.533 9.036 Atomic orbital electron populations 1.21717 0.96950 1.00386 1.01417 1.21629 0.94314 0.98979 1.01274 1.21884 0.89165 0.93640 1.00643 1.62619 1.05744 1.21672 1.35611 1.21843 0.93715 0.98431 0.92355 1.21090 0.96720 0.93272 1.00308 0.88636 1.21745 0.99935 0.97610 1.00141 1.21008 0.99146 0.90130 0.94086 1.59066 1.27782 1.01605 1.39554 1.22278 0.99349 0.94736 0.94937 1.22782 0.84561 1.01735 0.98558 1.19307 0.99339 0.82066 0.89210 0.89525 1.20900 1.11687 1.31310 0.92099 0.93256 1.24924 0.94785 0.94546 0.98185 1.69962 1.26258 1.40616 1.13358 0.86809 0.81271 0.80571 0.80168 1.20342 1.21276 1.20230 0.92746 0.93660 0.93548 0.91742 0.93507 0.97984 0.88737 0.92791 0.97573 0.93576 0.92495 0.93018 0.92242 0.97794 0.96969 0.92458 0.91565 0.91078 0.96829 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.15 0.37 -1.87 16 2 C -0.12 -2.23 5.68 -26.73 -0.15 -2.39 16 3 C 0.07 1.61 4.31 -3.82 -0.02 1.59 16 4 N -0.53 -12.19 4.73 -229.09 -1.08 -13.27 16 5 C 0.06 1.26 3.79 -4.31 -0.02 1.25 16 6 C -0.09 -1.72 2.47 -90.96 -0.22 -1.95 16 7 H 0.10 2.05 7.20 -51.93 -0.37 1.68 16 8 C -0.14 -1.95 8.91 37.16 0.33 -1.62 16 9 C 0.09 1.52 4.33 -6.55 -0.03 1.49 16 10 N -0.56 -10.91 4.23 -248.01 -1.05 -11.96 16 11 C 0.04 0.57 9.45 60.06 0.57 1.13 16 12 C 0.05 1.13 4.84 -4.50 -0.02 1.10 16 13 C 0.21 5.09 1.92 -69.51 -0.13 4.96 16 14 H 0.09 2.47 6.35 -51.93 -0.33 2.14 16 15 C -0.52 -13.84 5.57 -34.44 -0.19 -14.04 16 16 H 0.05 1.30 7.81 -52.48 -0.41 0.89 16 17 C 0.08 2.21 5.46 -17.82 -0.10 2.12 16 18 N -0.87 -24.87 12.79 55.43 0.71 -24.16 16 19 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.80 6.65 -51.93 -0.35 0.45 16 28 H 0.00 0.04 7.74 -51.93 -0.40 -0.36 16 29 H 0.09 2.27 6.30 -51.93 -0.33 1.95 16 30 H 0.05 1.00 6.49 -51.93 -0.34 0.67 16 31 H 0.01 0.12 6.38 -51.93 -0.33 -0.21 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.94 7.80 -51.93 -0.41 0.54 16 36 H 0.00 0.07 7.60 -51.93 -0.39 -0.32 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 39 H 0.07 1.06 7.97 -51.93 -0.41 0.64 16 40 H 0.07 1.59 7.31 -51.93 -0.38 1.21 16 41 H 0.01 0.30 6.33 -51.93 -0.33 -0.03 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 312.55 15.07 4.71 4.71 Total: -1.00 -27.83 312.55 -9.06 -36.89 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.71 Total: 0.09 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 0.38 Total: -8.22 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -1.42 Total: -49.38 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.83 -9.06 -36.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220425909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.909 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds