Wall clock time and date at job start Mon Mar 30 2020 03:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47489 * 2 1 4 4 N 1.46897 * 109.47472 * 180.02562 * 3 2 1 5 5 C 1.48068 * 111.00039 * 300.78891 * 4 3 2 6 6 C 1.50739 * 112.94433 * 192.22214 * 5 4 3 7 7 H 1.08999 * 109.64727 * 332.75826 * 6 5 4 8 8 C 1.52995 * 109.56026 * 212.48402 * 6 5 4 9 9 C 1.54515 * 108.94863 * 92.64554 * 6 5 4 10 10 N 1.40087 * 111.50791 * 283.99468 * 9 6 5 11 11 C 1.46894 * 111.00249 * 188.14845 * 10 9 6 12 12 C 1.47690 * 114.56691 * 61.45083 * 10 9 6 13 13 C 1.47742 * 111.00306 * 173.19004 * 4 3 2 14 14 H 1.08997 * 108.93039 * 205.52500 * 13 4 3 15 15 C 1.50707 * 108.99247 * 324.31457 * 13 4 3 16 16 H 1.08003 * 119.99508 * 87.51921 * 15 13 4 17 17 C 1.37873 * 120.00030 * 267.24902 * 15 13 4 18 18 N 1.31523 * 119.99769 * 0.27565 * 17 15 13 19 19 Si 1.86800 * 120.00000 * 180.27403 * 17 15 13 20 20 H 1.48497 * 109.47112 * 60.00229 * 19 17 15 21 21 H 1.48499 * 109.47021 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47219 * 300.00072 * 19 17 15 23 23 H 1.08997 * 109.47351 * 59.99935 * 1 2 3 24 24 H 1.08994 * 109.47464 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46827 * 300.00172 * 1 2 3 26 26 H 1.09005 * 109.47464 * 240.00025 * 2 1 3 27 27 H 1.08997 * 109.47351 * 120.00065 * 2 1 3 28 28 H 1.08996 * 109.46901 * 59.99670 * 3 2 1 29 29 H 1.09000 * 109.46795 * 299.99836 * 3 2 1 30 30 H 1.09007 * 108.79163 * 71.32493 * 5 4 3 31 31 H 1.09002 * 108.69809 * 313.05330 * 5 4 3 32 32 H 1.08999 * 109.47795 * 300.53342 * 8 6 5 33 33 H 1.08996 * 109.47067 * 60.53757 * 8 6 5 34 34 H 1.09003 * 109.47386 * 180.53126 * 8 6 5 35 35 H 1.09003 * 109.07802 * 163.47277 * 9 6 5 36 36 H 1.09001 * 109.07549 * 44.51492 * 9 6 5 37 37 H 1.09000 * 109.47648 * 295.31593 * 11 10 9 38 38 H 1.09006 * 109.47147 * 55.31403 * 11 10 9 39 39 H 1.09001 * 109.46952 * 175.31081 * 11 10 9 40 40 H 1.09000 * 109.73188 * 159.03409 * 12 10 9 41 41 H 1.09002 * 109.77696 * 38.35520 * 12 10 9 42 42 H 0.96998 * 119.99663 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0402 0.7347 1.1866 6 6 5.5174 0.9552 1.3900 7 1 5.9924 1.1628 0.4312 8 6 6.1414 -0.2963 2.0105 9 6 5.7192 2.1583 2.3384 10 7 5.4943 3.3743 1.6803 11 6 5.8740 4.5108 2.5301 12 6 4.1255 3.5426 1.1519 13 6 4.0385 2.8120 -0.1642 14 1 5.0336 2.7561 -0.6054 15 6 3.1333 3.5802 -1.0926 16 1 2.2767 4.1067 -0.6983 17 6 3.4019 3.6154 -2.4444 18 7 4.4451 2.9741 -2.9245 19 14 2.2844 4.5738 -3.5941 20 1 2.2713 6.0037 -3.1937 21 1 2.7865 4.4538 -4.9865 22 1 0.9065 4.0253 -3.5163 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.8575 -0.3335 1.0694 31 1 3.5077 1.0864 2.0703 32 1 5.6629 -0.5048 2.9674 33 1 5.9983 -1.1440 1.3404 34 1 7.2077 -0.1320 2.1657 35 1 6.7400 2.1435 2.7204 36 1 5.0259 2.0725 3.1751 37 1 5.2258 4.5423 3.4058 38 1 6.9100 4.3960 2.8489 39 1 5.7680 5.4375 1.9661 40 1 3.9175 4.6017 0.9995 41 1 3.4049 3.1233 1.8541 42 1 4.6338 2.9985 -3.8756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220425909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:11 Heat of formation + Delta-G solvation = -12.247278 kcal Electronic energy + Delta-G solvation = -19017.278412 eV Core-core repulsion = 16417.359167 eV Total energy + Delta-G solvation = -2599.919245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73740 -37.41702 -35.48460 -34.66169 -33.28497 -30.11603 -28.12142 -27.74461 -26.57477 -25.28412 -23.55146 -22.15650 -21.26310 -20.25720 -18.21118 -16.94830 -16.84932 -16.24747 -16.09549 -15.86151 -15.51112 -15.24192 -14.31801 -14.09578 -13.87367 -13.73488 -13.41344 -13.37711 -13.15217 -12.98654 -12.76794 -12.73118 -12.56395 -12.32853 -12.28160 -11.83855 -11.72407 -11.65025 -11.38798 -11.27608 -10.98058 -10.84640 -10.50258 -9.12942 -8.44637 -8.04270 -6.15603 1.43080 1.43540 1.51025 2.44888 3.08508 3.19590 3.62178 3.87284 4.06214 4.13807 4.27628 4.35192 4.44473 4.45518 4.57606 4.61934 4.63733 4.68556 4.75138 4.84308 4.86265 4.87884 4.95876 4.98550 5.02923 5.08992 5.18747 5.26329 5.29731 5.38809 5.43892 5.55178 5.59697 5.66164 5.83384 6.17177 6.30792 6.58382 6.90695 6.95187 7.16247 7.49849 9.03386 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017087 B = 0.010410 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.273839 B = 2689.002230 C = 3636.404237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.081 3.919 4 N -0.554 5.554 5 C 0.069 3.931 6 C -0.094 4.094 7 H 0.055 0.945 8 C -0.127 4.127 9 C 0.087 3.913 10 N -0.576 5.576 11 C 0.036 3.964 12 C 0.066 3.934 13 C 0.215 3.785 14 H 0.044 0.956 15 C -0.526 4.526 16 H 0.045 0.955 17 C 0.033 3.967 18 N -0.903 5.903 19 Si 0.944 3.056 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.271 1.271 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.060 0.940 28 H -0.001 1.001 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.007 0.993 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.010 0.990 37 H 0.024 0.976 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.011 0.989 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 -4.037 10.271 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.047 4.047 4 N -0.279 5.279 5 C -0.058 4.058 6 C -0.114 4.114 7 H 0.074 0.926 8 C -0.185 4.185 9 C -0.043 4.043 10 N -0.300 5.300 11 C -0.112 4.112 12 C -0.063 4.063 13 C 0.109 3.891 14 H 0.062 0.938 15 C -0.565 4.565 16 H 0.063 0.937 17 C -0.169 4.169 18 N -0.541 5.541 19 Si 0.770 3.230 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.196 1.196 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.017 0.983 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.028 0.972 37 H 0.043 0.957 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.029 0.971 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.128 -4.339 9.354 10.312 hybrid contribution -1.281 1.146 0.392 1.763 sum -1.408 -3.193 9.746 10.352 Atomic orbital electron populations 1.21672 0.94571 1.02141 1.01512 1.21541 0.96346 0.96222 1.01243 1.21789 0.88341 0.95767 0.98792 1.62397 1.06674 1.20858 1.37944 1.21890 0.94663 0.98449 0.90807 1.21097 0.95504 0.95715 0.99050 0.92641 1.21669 1.00776 0.95400 1.00624 1.21070 1.00634 0.88878 0.93687 1.58998 1.25985 1.03628 1.41403 1.22333 1.00964 0.93190 0.94663 1.22415 0.86259 1.00332 0.97272 1.18994 0.96710 0.83275 0.90144 0.93849 1.21169 1.11507 1.31066 0.92788 0.93701 1.25615 0.96027 0.95564 0.99676 1.70107 1.28060 1.42539 1.13403 0.85848 0.79594 0.79443 0.78128 1.19656 1.21166 1.19631 0.93450 0.91060 0.92697 0.93015 0.92159 0.98318 0.91995 0.91601 0.97525 0.91682 0.92340 0.91406 0.89789 0.97173 0.95722 0.90025 0.92061 0.92249 0.97077 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.91 71.98 0.71 -3.33 16 2 C -0.12 -4.05 5.68 30.59 0.17 -3.88 16 3 C 0.08 3.53 4.31 86.30 0.37 3.90 16 4 N -0.55 -25.89 4.73 -878.71 -4.16 -30.05 16 5 C 0.07 2.67 3.79 85.34 0.32 3.00 16 6 C -0.09 -3.35 2.47 -11.01 -0.03 -3.38 16 7 H 0.06 2.44 7.20 -2.39 -0.02 2.42 16 8 C -0.13 -3.30 8.91 71.98 0.64 -2.66 16 9 C 0.09 2.90 4.33 88.05 0.38 3.28 16 10 N -0.58 -22.26 4.23 -938.57 -3.97 -26.23 16 11 C 0.04 1.09 9.45 127.69 1.21 2.30 16 12 C 0.07 2.92 4.84 85.43 0.41 3.33 16 13 C 0.21 10.97 1.92 43.29 0.08 11.06 16 14 H 0.04 2.60 6.35 -2.39 -0.02 2.59 16 15 C -0.53 -28.87 5.57 25.60 0.14 -28.72 16 16 H 0.04 2.44 7.81 -2.91 -0.02 2.41 16 17 C 0.03 1.85 5.46 84.65 0.46 2.31 16 18 N -0.90 -53.79 12.79 21.45 0.27 -53.52 16 19 Si 0.94 43.88 29.54 68.60 2.03 45.90 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.06 1.94 6.65 -2.39 -0.02 1.93 16 28 H 0.00 -0.05 7.74 -2.39 -0.02 -0.07 16 29 H 0.06 3.07 6.30 -2.39 -0.02 3.05 16 30 H 0.07 2.36 6.49 -2.38 -0.02 2.34 16 31 H 0.01 0.26 6.38 -2.39 -0.02 0.24 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 2.41 7.80 -2.39 -0.02 2.39 16 36 H 0.01 0.34 7.60 -2.39 -0.02 0.32 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 2.09 7.96 -2.38 -0.02 2.07 16 39 H 0.06 1.91 7.97 -2.39 -0.02 1.89 16 40 H 0.06 2.71 7.31 -2.39 -0.02 2.69 16 41 H 0.01 0.49 6.33 -2.39 -0.02 0.48 16 42 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -61.92 312.55 0.01 -61.91 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.95 Total: 14.77 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.89 Total: -12.79 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -7.86 Total: -109.79 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -61.92 0.01 -61.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220425909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.660 kcal (2) G-P(sol) polarization free energy of solvation -61.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds