Wall clock time and date at job start Mon Mar 30 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47004 * 2 1 4 4 N 1.46902 * 109.46948 * 179.97438 * 3 2 1 5 5 C 1.40086 * 111.00286 * 286.68058 * 4 3 2 6 6 C 1.54512 * 111.50934 * 188.15691 * 5 4 3 7 7 H 1.08997 * 109.56457 * 43.83398 * 6 5 4 8 8 C 1.52998 * 109.64539 * 164.10465 * 6 5 4 9 9 C 1.50744 * 108.94336 * 283.99031 * 6 5 4 10 10 N 1.48076 * 112.93407 * 92.64903 * 9 6 5 11 11 C 1.46894 * 111.00029 * 192.21634 * 10 9 6 12 12 C 1.47747 * 113.79129 * 318.28071 * 10 9 6 13 13 C 1.47687 * 111.00084 * 55.32482 * 4 3 2 14 14 H 1.08997 * 109.73868 * 271.62484 * 13 4 3 15 15 C 1.50697 * 109.73990 * 32.33243 * 13 4 3 16 16 H 1.08006 * 120.00090 * 4.14989 * 15 13 4 17 17 C 1.37879 * 120.00346 * 184.15769 * 15 13 4 18 18 N 1.31516 * 119.99529 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00145 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46907 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47367 * 119.99814 * 19 17 15 22 22 H 1.48500 * 109.46681 * 239.99577 * 19 17 15 23 23 H 1.09004 * 109.47336 * 300.00347 * 1 2 3 24 24 H 1.08997 * 109.46770 * 60.00419 * 1 2 3 25 25 H 1.08997 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47063 * 239.99173 * 2 1 3 27 27 H 1.09005 * 109.47076 * 119.99462 * 2 1 3 28 28 H 1.08994 * 109.47365 * 59.99756 * 3 2 1 29 29 H 1.08997 * 109.47014 * 299.99431 * 3 2 1 30 30 H 1.08997 * 109.06873 * 67.62731 * 5 4 3 31 31 H 1.09003 * 109.06872 * 308.67947 * 5 4 3 32 32 H 1.08998 * 109.47172 * 179.72761 * 8 6 5 33 33 H 1.09004 * 109.47292 * 299.72969 * 8 6 5 34 34 H 1.09006 * 109.47492 * 59.72978 * 8 6 5 35 35 H 1.08996 * 108.79198 * 213.53553 * 9 6 5 36 36 H 1.08996 * 108.79383 * 331.76212 * 9 6 5 37 37 H 1.09002 * 109.47465 * 59.99865 * 11 10 9 38 38 H 1.09004 * 109.47420 * 180.02562 * 11 10 9 39 39 H 1.09004 * 109.47109 * 299.99853 * 11 10 9 40 40 H 1.09004 * 108.98944 * 79.50172 * 12 10 9 41 41 H 1.08997 * 108.99333 * 198.32754 * 12 10 9 42 42 H 0.96998 * 119.99561 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0105 1.0673 1.2536 6 6 5.5420 1.2572 1.3309 7 1 5.8137 2.2154 0.8881 8 6 5.9915 1.2228 2.7929 9 6 6.2124 0.1416 0.5705 10 7 6.4895 0.4908 -0.8416 11 6 6.8693 -0.6998 -1.6135 12 6 5.3879 1.2208 -1.5021 13 6 4.0387 0.6579 -1.1329 14 1 4.1434 -0.3869 -0.8405 15 6 3.1027 0.7669 -2.3089 16 1 2.2377 1.4111 -2.2527 17 6 3.3505 0.0441 -3.4566 18 7 4.4041 -0.7401 -3.5252 19 14 2.1907 0.1798 -4.9146 20 1 1.0905 1.1215 -4.5859 21 1 2.9370 0.6827 -6.0959 22 1 1.6222 -1.1574 -5.2209 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 3.7720 0.0190 1.4333 31 1 3.5368 1.6761 2.0237 32 1 7.0726 1.3522 2.8438 33 1 5.5029 2.0276 3.3423 34 1 5.7192 0.2641 3.2344 35 1 7.1537 -0.1027 1.0628 36 1 5.5677 -0.7369 0.5948 37 1 6.0563 -1.4254 -1.5860 38 1 7.0677 -0.4149 -2.6468 39 1 7.7663 -1.1427 -1.1806 40 1 5.4284 2.2688 -1.2049 41 1 5.5155 1.1537 -2.5825 42 1 4.5786 -1.2483 -4.3327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220425978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:14 Heat of formation + Delta-G solvation = 10.617601 kcal Electronic energy + Delta-G solvation = -19392.535275 eV Core-core repulsion = 16793.607525 eV Total energy + Delta-G solvation = -2598.927750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.23428 -35.72651 -34.09107 -32.44197 -31.59670 -28.43203 -26.54691 -26.01631 -24.77325 -23.38572 -22.13460 -20.93972 -19.16891 -18.63090 -16.35583 -15.47746 -15.22303 -14.42903 -14.16973 -13.91394 -13.76648 -13.67476 -12.82827 -12.47714 -12.25300 -12.19510 -12.13494 -11.45221 -11.37204 -11.23675 -11.01592 -10.91428 -10.74569 -10.64330 -10.57010 -10.30758 -10.21730 -10.02584 -9.95166 -9.51495 -9.37202 -8.92697 -8.51315 -7.27621 -6.87983 -6.06360 -4.09916 3.25390 3.34590 3.37607 4.36715 4.87468 5.11672 5.24523 5.35926 5.47790 5.68394 5.70947 5.76406 5.95726 6.05486 6.08376 6.15971 6.21040 6.23365 6.32580 6.36418 6.47138 6.53623 6.54427 6.59573 6.64604 6.73100 6.88360 6.89417 6.99614 7.08304 7.16274 7.32132 7.40199 7.76747 7.77982 7.93027 8.12131 8.31507 8.40056 8.79401 8.97217 9.52990 10.98390 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.011417 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.719319 B = 2451.894161 C = 3520.742368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.162 4.162 3 C 0.079 3.921 4 N -0.558 5.558 5 C 0.085 3.915 6 C -0.093 4.093 7 H 0.085 0.915 8 C -0.136 4.136 9 C 0.069 3.931 10 N -0.558 5.558 11 C 0.050 3.950 12 C 0.078 3.922 13 C 0.205 3.795 14 H 0.009 0.991 15 C -0.511 4.511 16 H 0.070 0.930 17 C 0.062 3.938 18 N -0.884 5.884 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.287 1.287 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.006 0.994 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.022 0.978 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 1.319 7.540 7.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.200 4.200 3 C -0.048 4.048 4 N -0.281 5.281 5 C -0.045 4.045 6 C -0.112 4.112 7 H 0.103 0.897 8 C -0.195 4.195 9 C -0.059 4.059 10 N -0.282 5.282 11 C -0.098 4.098 12 C -0.049 4.049 13 C 0.099 3.901 14 H 0.027 0.973 15 C -0.550 4.550 16 H 0.088 0.912 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.213 1.213 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.421 1.947 7.348 7.614 hybrid contribution -1.529 -1.513 -0.699 2.262 sum -1.108 0.434 6.649 6.755 Atomic orbital electron populations 1.21648 0.97167 1.00398 1.00706 1.22267 0.94815 1.00050 1.02911 1.21935 0.87649 0.94896 1.00341 1.59337 1.06522 1.58713 1.03564 1.20962 0.94217 0.97005 0.92326 1.21077 0.94894 1.00560 0.94704 0.89668 1.21744 1.00668 1.01086 0.95972 1.21769 0.97988 0.96224 0.89939 1.62227 1.40796 1.24344 1.00859 1.22079 0.97965 0.92203 0.97581 1.22067 0.88010 0.95555 0.99279 1.19413 0.93108 0.90602 0.86962 0.97348 1.21383 1.09740 1.26051 0.97812 0.91173 1.24932 0.95398 0.95324 0.98406 1.69980 1.26526 1.27817 1.27930 0.86546 0.81057 0.77690 0.82786 1.19773 1.21070 1.21298 0.94061 0.92901 0.93868 0.88431 0.94291 0.94134 0.90118 0.97597 0.92962 0.92773 0.92926 0.93312 0.92813 0.95972 0.94358 0.91718 0.95001 0.93154 0.89735 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.16 -3.13 5.23 -26.73 -0.14 -3.27 16 3 C 0.08 1.56 4.74 -3.82 -0.02 1.54 16 4 N -0.56 -11.80 4.12 -233.09 -0.96 -12.76 16 5 C 0.09 1.60 4.09 -6.55 -0.03 1.57 16 6 C -0.09 -1.63 2.47 -90.96 -0.22 -1.86 16 7 H 0.08 1.63 7.19 -51.93 -0.37 1.25 16 8 C -0.14 -1.88 8.92 37.16 0.33 -1.55 16 9 C 0.07 1.32 4.56 -4.31 -0.02 1.30 16 10 N -0.56 -12.01 4.99 -243.98 -1.22 -13.23 16 11 C 0.05 1.07 8.83 60.06 0.53 1.60 16 12 C 0.08 1.85 4.49 -4.47 -0.02 1.83 16 13 C 0.21 4.89 0.86 -69.55 -0.06 4.83 16 14 H 0.01 0.24 6.16 -51.93 -0.32 -0.08 16 15 C -0.51 -12.98 5.97 -34.44 -0.21 -13.18 16 16 H 0.07 1.79 5.27 -52.48 -0.28 1.51 16 17 C 0.06 1.59 5.05 -17.82 -0.09 1.50 16 18 N -0.88 -23.43 11.11 55.43 0.62 -22.82 16 19 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.10 2.24 5.64 -51.93 -0.29 1.95 16 27 H 0.04 0.74 6.93 -51.93 -0.36 0.38 16 28 H 0.04 0.72 7.78 -51.93 -0.40 0.31 16 29 H 0.08 1.69 5.87 -51.93 -0.30 1.38 16 30 H 0.01 0.12 6.37 -51.93 -0.33 -0.21 16 31 H 0.05 0.90 7.69 -51.93 -0.40 0.50 16 32 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.94 7.68 -51.93 -0.40 0.54 16 36 H 0.02 0.47 6.38 -51.93 -0.33 0.14 16 37 H 0.04 0.90 7.35 -51.93 -0.38 0.52 16 38 H 0.06 1.43 7.86 -51.93 -0.41 1.03 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 41 H 0.08 2.22 5.96 -51.93 -0.31 1.91 16 42 H 0.26 6.68 8.31 -40.82 -0.34 6.35 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -25.65 302.81 -8.95 -34.61 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.36 Total: 1.73 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 0.43 Total: -7.59 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -1.56 Total: -48.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.65 -8.95 -34.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220425978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.224 kcal (2) G-P(sol) polarization free energy of solvation -25.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds