Wall clock time and date at job start Mon Mar 30 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47004 * 2 1 4 4 N 1.46902 * 109.46948 * 179.97438 * 3 2 1 5 5 C 1.40086 * 111.00286 * 286.68058 * 4 3 2 6 6 C 1.54512 * 111.50934 * 188.15691 * 5 4 3 7 7 H 1.08997 * 109.56457 * 43.83398 * 6 5 4 8 8 C 1.52998 * 109.64539 * 164.10465 * 6 5 4 9 9 C 1.50744 * 108.94336 * 283.99031 * 6 5 4 10 10 N 1.48076 * 112.93407 * 92.64903 * 9 6 5 11 11 C 1.46894 * 111.00029 * 192.21634 * 10 9 6 12 12 C 1.47747 * 113.79129 * 318.28071 * 10 9 6 13 13 C 1.47687 * 111.00084 * 55.32482 * 4 3 2 14 14 H 1.08997 * 109.73868 * 271.62484 * 13 4 3 15 15 C 1.50697 * 109.73990 * 32.33243 * 13 4 3 16 16 H 1.08006 * 120.00090 * 4.14989 * 15 13 4 17 17 C 1.37879 * 120.00346 * 184.15769 * 15 13 4 18 18 N 1.31516 * 119.99529 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00145 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46907 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47367 * 119.99814 * 19 17 15 22 22 H 1.48500 * 109.46681 * 239.99577 * 19 17 15 23 23 H 1.09004 * 109.47336 * 300.00347 * 1 2 3 24 24 H 1.08997 * 109.46770 * 60.00419 * 1 2 3 25 25 H 1.08997 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47063 * 239.99173 * 2 1 3 27 27 H 1.09005 * 109.47076 * 119.99462 * 2 1 3 28 28 H 1.08994 * 109.47365 * 59.99756 * 3 2 1 29 29 H 1.08997 * 109.47014 * 299.99431 * 3 2 1 30 30 H 1.08997 * 109.06873 * 67.62731 * 5 4 3 31 31 H 1.09003 * 109.06872 * 308.67947 * 5 4 3 32 32 H 1.08998 * 109.47172 * 179.72761 * 8 6 5 33 33 H 1.09004 * 109.47292 * 299.72969 * 8 6 5 34 34 H 1.09006 * 109.47492 * 59.72978 * 8 6 5 35 35 H 1.08996 * 108.79198 * 213.53553 * 9 6 5 36 36 H 1.08996 * 108.79383 * 331.76212 * 9 6 5 37 37 H 1.09002 * 109.47465 * 59.99865 * 11 10 9 38 38 H 1.09004 * 109.47420 * 180.02562 * 11 10 9 39 39 H 1.09004 * 109.47109 * 299.99853 * 11 10 9 40 40 H 1.09004 * 108.98944 * 79.50172 * 12 10 9 41 41 H 1.08997 * 108.99333 * 198.32754 * 12 10 9 42 42 H 0.96998 * 119.99561 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0105 1.0673 1.2536 6 6 5.5420 1.2572 1.3309 7 1 5.8137 2.2154 0.8881 8 6 5.9915 1.2228 2.7929 9 6 6.2124 0.1416 0.5705 10 7 6.4895 0.4908 -0.8416 11 6 6.8693 -0.6998 -1.6135 12 6 5.3879 1.2208 -1.5021 13 6 4.0387 0.6579 -1.1329 14 1 4.1434 -0.3869 -0.8405 15 6 3.1027 0.7669 -2.3089 16 1 2.2377 1.4111 -2.2527 17 6 3.3505 0.0441 -3.4566 18 7 4.4041 -0.7401 -3.5252 19 14 2.1907 0.1798 -4.9146 20 1 1.0905 1.1215 -4.5859 21 1 2.9370 0.6827 -6.0959 22 1 1.6222 -1.1574 -5.2209 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 3.7720 0.0190 1.4333 31 1 3.5368 1.6761 2.0237 32 1 7.0726 1.3522 2.8438 33 1 5.5029 2.0276 3.3423 34 1 5.7192 0.2641 3.2344 35 1 7.1537 -0.1027 1.0628 36 1 5.5677 -0.7369 0.5948 37 1 6.0563 -1.4254 -1.5860 38 1 7.0677 -0.4149 -2.6468 39 1 7.7663 -1.1427 -1.1806 40 1 5.4284 2.2688 -1.2049 41 1 5.5155 1.1537 -2.5825 42 1 4.5786 -1.2483 -4.3327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220425978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:14 Heat of formation + Delta-G solvation = -5.853019 kcal Electronic energy + Delta-G solvation = -19393.249495 eV Core-core repulsion = 16793.607525 eV Total energy + Delta-G solvation = -2599.641970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.90927 -37.37432 -35.76378 -34.20346 -33.19155 -30.24628 -28.07550 -27.59034 -26.54371 -25.08628 -23.78004 -22.51589 -20.72079 -20.42114 -18.29270 -17.18605 -16.91693 -16.16248 -15.93459 -15.54120 -15.44741 -15.20802 -14.29775 -14.13848 -13.79945 -13.70957 -13.66120 -13.15448 -12.90114 -12.81157 -12.70535 -12.56502 -12.52946 -12.29362 -12.09991 -11.99124 -11.79130 -11.71570 -11.60527 -11.15809 -11.08209 -10.77638 -10.51859 -9.05787 -8.63640 -8.05762 -6.14351 1.39057 1.43380 1.52115 2.43086 3.19629 3.26797 3.47523 3.90676 4.06008 4.19089 4.24932 4.36359 4.55042 4.59243 4.70085 4.70240 4.77935 4.82055 4.83654 4.89917 4.92891 4.93815 5.02275 5.05925 5.13951 5.21840 5.24459 5.29942 5.33437 5.38949 5.52024 5.60365 5.66292 5.80081 5.84546 6.02764 6.35931 6.50669 6.55739 6.99321 7.05848 7.50879 8.97342 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.011417 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.719319 B = 2451.894161 C = 3520.742368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.153 4.153 3 C 0.079 3.921 4 N -0.565 5.565 5 C 0.083 3.917 6 C -0.089 4.089 7 H 0.072 0.928 8 C -0.127 4.127 9 C 0.070 3.930 10 N -0.559 5.559 11 C 0.063 3.937 12 C 0.092 3.908 13 C 0.223 3.777 14 H -0.031 1.031 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.018 3.982 18 N -0.904 5.904 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.288 1.288 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.065 0.935 30 H -0.007 1.007 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.078 0.922 36 H -0.001 1.001 37 H 0.007 0.993 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 2.156 9.278 9.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.192 4.192 3 C -0.048 4.048 4 N -0.287 5.287 5 C -0.047 4.047 6 C -0.108 4.108 7 H 0.090 0.910 8 C -0.185 4.185 9 C -0.057 4.057 10 N -0.283 5.283 11 C -0.085 4.085 12 C -0.036 4.036 13 C 0.115 3.885 14 H -0.013 1.013 15 C -0.555 4.555 16 H 0.086 0.914 17 C -0.182 4.182 18 N -0.543 5.543 19 Si 0.774 3.226 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.215 1.215 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.010 0.990 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.017 0.983 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.012 2.792 9.103 9.522 hybrid contribution -1.395 -1.786 -1.197 2.562 sum -1.382 1.006 7.907 8.089 Atomic orbital electron populations 1.21591 0.94507 1.01361 1.01801 1.22091 0.97135 0.99284 1.00697 1.21965 0.86799 0.95106 1.00913 1.59344 1.07615 1.57889 1.03900 1.21080 0.95410 0.96590 0.91587 1.21088 0.93792 0.98813 0.97103 0.90982 1.21680 1.01699 1.02246 0.92913 1.21897 0.98950 0.96159 0.88711 1.62265 1.39702 1.24252 1.02077 1.21928 0.98008 0.91409 0.97189 1.21785 0.88735 0.95616 0.97504 1.19054 0.93116 0.88677 0.87604 1.01307 1.21589 1.09834 1.25682 0.98432 0.91376 1.25569 0.96662 0.95320 1.00600 1.70104 1.27664 1.28376 1.28202 0.85675 0.79507 0.77426 0.80030 1.19144 1.21126 1.21478 0.91499 0.93202 0.93048 0.92729 0.94366 0.91220 0.91677 0.98954 0.90425 0.91379 0.91147 0.92596 0.90371 0.98288 0.97409 0.93239 0.91950 0.93474 0.92934 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.91 71.98 0.71 -3.43 16 2 C -0.15 -5.88 5.23 30.59 0.16 -5.72 16 3 C 0.08 3.04 4.74 86.30 0.41 3.45 16 4 N -0.56 -23.71 4.12 -891.36 -3.68 -27.38 16 5 C 0.08 3.01 4.09 88.05 0.36 3.37 16 6 C -0.09 -2.96 2.47 -11.01 -0.03 -2.98 16 7 H 0.07 2.63 7.19 -2.39 -0.02 2.61 16 8 C -0.13 -3.06 8.92 71.98 0.64 -2.42 16 9 C 0.07 2.65 4.56 85.34 0.39 3.04 16 10 N -0.56 -24.24 4.99 -925.80 -4.62 -28.87 16 11 C 0.06 2.75 8.83 127.69 1.13 3.88 16 12 C 0.09 4.45 4.49 85.42 0.38 4.83 16 13 C 0.22 10.91 0.86 43.30 0.04 10.95 16 14 H -0.03 -1.73 6.16 -2.39 -0.01 -1.74 16 15 C -0.52 -26.95 5.97 25.60 0.15 -26.79 16 16 H 0.07 3.53 5.27 -2.91 -0.02 3.51 16 17 C 0.02 0.98 5.05 84.65 0.43 1.41 16 18 N -0.90 -49.78 11.11 21.45 0.24 -49.54 16 19 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 2.58 5.64 -2.39 -0.01 2.57 16 27 H 0.04 1.44 6.93 -2.38 -0.02 1.43 16 28 H 0.07 2.27 7.78 -2.39 -0.02 2.25 16 29 H 0.06 2.69 5.87 -2.39 -0.01 2.68 16 30 H -0.01 -0.29 6.37 -2.39 -0.02 -0.31 16 31 H 0.08 2.42 7.69 -2.39 -0.02 2.41 16 32 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.08 2.57 7.68 -2.39 -0.02 2.55 16 36 H 0.00 -0.05 6.38 -2.39 -0.02 -0.07 16 37 H 0.01 0.36 7.35 -2.39 -0.02 0.34 16 38 H 0.05 2.26 7.86 -2.39 -0.02 2.24 16 39 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.05 2.28 7.20 -2.38 -0.02 2.26 16 41 H 0.05 2.87 5.96 -2.39 -0.01 2.86 16 42 H 0.26 13.72 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -56.91 302.81 -0.29 -57.20 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.97 Total: 14.04 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.78 Total: -10.41 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -8.06 Total: -105.79 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -56.91 -0.29 -57.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220425978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.348 kcal (2) G-P(sol) polarization free energy of solvation -56.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds