Wall clock time and date at job start Mon Mar 30 2020 03:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 N 1.46898 * 109.47370 * 185.22473 * 3 2 1 5 5 C 1.47696 * 110.99875 * 62.19379 * 4 3 2 6 6 C 1.50777 * 108.09448 * 151.97983 * 5 4 3 7 7 H 1.09001 * 108.99674 * 334.07059 * 6 5 4 8 8 C 1.50700 * 108.99407 * 215.24357 * 6 5 4 9 9 H 1.08004 * 119.99779 * 359.97438 * 8 6 5 10 10 C 1.37873 * 120.00427 * 180.02562 * 8 6 5 11 11 N 1.31517 * 120.00149 * 179.97438 * 10 8 6 12 12 Si 1.86803 * 119.99861 * 359.97438 * 10 8 6 13 13 H 1.48505 * 109.47073 * 89.99954 * 12 10 8 14 14 H 1.48499 * 109.47322 * 209.99994 * 12 10 8 15 15 H 1.48501 * 109.47064 * 330.00334 * 12 10 8 16 16 N 1.47744 * 111.91131 * 94.61594 * 6 5 4 17 17 C 1.48176 * 113.86262 * 318.81615 * 16 6 5 18 18 C 1.50742 * 112.87394 * 318.44297 * 17 16 6 19 19 C 1.52993 * 109.55925 * 332.63954 * 18 17 16 20 20 C 1.53005 * 109.55983 * 212.42042 * 18 17 16 21 21 C 1.40079 * 111.00235 * 293.55034 * 4 3 2 22 22 H 1.09005 * 109.47465 * 60.00884 * 1 2 3 23 23 H 1.09005 * 109.46875 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47999 * 300.00092 * 1 2 3 25 25 H 1.09003 * 109.47883 * 240.00025 * 2 1 3 26 26 H 1.08999 * 109.47637 * 119.99526 * 2 1 3 27 27 H 1.09001 * 109.47637 * 65.22382 * 3 2 1 28 28 H 1.09006 * 109.46985 * 305.22415 * 3 2 1 29 29 H 1.08992 * 109.73582 * 271.63352 * 5 4 3 30 30 H 1.09004 * 109.73529 * 32.33094 * 5 4 3 31 31 H 0.97001 * 119.99620 * 179.97438 * 11 10 8 32 32 H 1.00901 * 111.00551 * 192.80885 * 16 6 5 33 33 H 1.09001 * 108.96510 * 197.47264 * 17 16 6 34 34 H 1.08998 * 108.68880 * 79.22021 * 17 16 6 35 35 H 1.08998 * 109.47319 * 338.29391 * 19 18 17 36 36 H 1.08996 * 109.47731 * 98.29596 * 19 18 17 37 37 H 1.09009 * 109.47207 * 218.30159 * 19 18 17 38 38 H 1.09003 * 109.46946 * 180.21054 * 20 18 17 39 39 H 1.08994 * 109.47462 * 300.21563 * 20 18 17 40 40 H 1.08996 * 109.46575 * 60.21702 * 20 18 17 41 41 H 1.09006 * 109.07075 * 67.62496 * 21 4 3 42 42 H 1.08998 * 109.02182 * 308.63150 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5034 1.4445 -0.1261 5 6 3.9252 0.8394 -1.4057 6 6 5.2443 1.4532 -1.8017 7 1 5.3229 2.4442 -1.3547 8 6 5.2922 1.5871 -3.3020 9 1 4.4543 1.2606 -3.9003 10 6 6.4059 2.1254 -3.9109 11 7 6.4478 2.2418 -5.2202 12 14 7.8553 2.6894 -2.8761 13 1 8.8046 1.5614 -2.6974 14 1 8.5446 3.8128 -3.5602 15 1 7.3689 3.1422 -1.5481 16 7 6.3898 0.6338 -1.3552 17 6 6.2328 0.0765 0.0087 18 6 5.6406 1.0648 0.9809 19 6 5.9828 2.4882 0.5366 20 6 6.2108 0.8132 2.3782 21 6 4.1059 0.8866 1.0087 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3635 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.7550 1.9287 0.9330 28 1 1.6021 1.9826 -0.8396 29 1 4.0423 -0.2372 -1.2827 30 1 3.1788 1.0438 -2.1733 31 1 7.2313 2.6209 -5.6485 32 1 7.2550 1.1465 -1.4374 33 1 7.2093 -0.2370 0.3779 34 1 5.5828 -0.7969 -0.0436 35 1 6.8568 2.4655 -0.1143 36 1 5.1376 2.9130 -0.0049 37 1 6.1981 3.1004 1.4124 38 1 5.7789 1.5261 3.0806 39 1 5.9662 -0.2011 2.6933 40 1 7.2936 0.9356 2.3561 41 1 3.8716 -0.1772 1.0498 42 1 3.7069 1.3736 1.8985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220426215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:06 Heat of formation + Delta-G solvation = 32.323649 kcal Electronic energy + Delta-G solvation = -19282.823161 eV Core-core repulsion = 16684.836656 eV Total energy + Delta-G solvation = -2597.986505 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04786 -36.23829 -34.11303 -32.40881 -31.75338 -28.63588 -27.07858 -26.49061 -25.81660 -24.03813 -22.82296 -20.99217 -19.00428 -18.34633 -16.78706 -16.15775 -15.31238 -15.05195 -14.90527 -14.34617 -14.05879 -13.55606 -13.30633 -12.82674 -12.70267 -12.41598 -12.15620 -12.07440 -11.68310 -11.66067 -11.26583 -11.21261 -11.07817 -10.77790 -10.68636 -10.35350 -10.32698 -10.26251 -10.02600 -9.65326 -9.40431 -9.16050 -8.51324 -7.62477 -7.11048 -6.01504 -3.99516 3.29821 3.32671 3.39990 4.40543 4.44642 4.93416 5.01452 5.08063 5.14612 5.18484 5.36003 5.41744 5.62374 5.71152 5.72087 5.79099 5.87080 5.88661 5.95126 5.96909 6.05557 6.09003 6.13579 6.17023 6.20192 6.35255 6.37385 6.47932 6.54577 6.59467 6.63834 6.74750 6.94787 7.29332 7.65803 7.74089 7.86548 8.29059 8.42523 8.58320 9.01957 9.62217 11.11714 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.009902 C = 0.007546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.234870 B = 2827.148221 C = 3709.481710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.163 4.163 3 C 0.063 3.937 4 N -0.556 5.556 5 C 0.086 3.914 6 C 0.164 3.836 7 H 0.043 0.957 8 C -0.495 4.495 9 H 0.073 0.927 10 C 0.076 3.924 11 N -0.901 5.901 12 Si 0.871 3.129 13 H -0.276 1.276 14 H -0.298 1.298 15 H -0.253 1.253 16 N -0.688 5.688 17 C 0.062 3.938 18 C -0.096 4.096 19 C -0.161 4.161 20 C -0.132 4.132 21 C 0.091 3.909 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.262 0.738 32 H 0.316 0.684 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.035 0.965 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.016 0.984 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 -2.353 14.238 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.202 4.202 3 C -0.065 4.065 4 N -0.278 5.278 5 C -0.040 4.040 6 C 0.059 3.941 7 H 0.060 0.940 8 C -0.534 4.534 9 H 0.092 0.908 10 C -0.126 4.126 11 N -0.540 5.540 12 Si 0.702 3.298 13 H -0.202 1.202 14 H -0.225 1.225 15 H -0.180 1.180 16 N -0.325 5.325 17 C -0.067 4.067 18 C -0.098 4.098 19 C -0.218 4.218 20 C -0.190 4.190 21 C -0.039 4.039 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.595 -2.385 13.763 15.047 hybrid contribution 0.886 0.065 1.001 1.338 sum -4.709 -2.321 14.764 15.669 Atomic orbital electron populations 1.21674 0.95817 1.01233 1.01629 1.22213 0.96229 0.99620 1.02175 1.22193 0.87469 0.94808 1.01998 1.59214 1.05828 1.59473 1.03329 1.21879 0.98263 0.95938 0.87871 1.19902 0.85842 0.92554 0.95853 0.94003 1.21122 1.03354 1.39668 0.89296 0.90845 1.24953 0.97934 0.95038 0.94635 1.69899 1.29714 1.45787 1.08634 0.87174 0.83548 0.78042 0.81065 1.20248 1.22527 1.17953 1.61414 1.05903 1.44718 1.20424 1.21959 0.99334 0.96654 0.88799 1.21161 0.95048 0.97773 0.95837 1.22631 1.03886 0.94857 1.00394 1.21848 1.00431 1.00858 0.95862 1.20955 0.93896 0.96207 0.92870 0.92580 0.93196 0.93045 0.91517 0.92456 0.91699 0.90660 0.94621 0.90457 0.92794 0.86169 0.92999 0.92438 0.92432 0.88287 0.94637 0.93028 0.93110 0.92833 0.96610 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.15 0.37 -1.19 16 2 C -0.16 -2.10 5.38 -26.73 -0.14 -2.24 16 3 C 0.06 0.89 5.16 -3.82 -0.02 0.87 16 4 N -0.56 -9.44 3.01 -239.68 -0.72 -10.16 16 5 C 0.09 1.74 3.66 -4.50 -0.02 1.73 16 6 C 0.16 3.83 1.38 -69.51 -0.10 3.74 16 7 H 0.04 1.02 3.44 -51.93 -0.18 0.84 16 8 C -0.50 -13.91 9.21 -34.44 -0.32 -14.23 16 9 H 0.07 2.22 7.68 -52.48 -0.40 1.82 16 10 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 11 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 12 Si 0.87 21.47 24.46 -169.99 -4.16 17.31 16 13 H -0.28 -6.75 7.06 56.52 0.40 -6.35 16 14 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 15 H -0.25 -5.78 4.12 56.52 0.23 -5.55 16 16 N -0.69 -15.47 5.82 -108.80 -0.63 -16.11 16 17 C 0.06 1.15 5.29 -4.25 -0.02 1.12 16 18 C -0.10 -1.56 0.77 -154.84 -0.12 -1.67 16 19 C -0.16 -2.91 7.33 37.15 0.27 -2.64 16 20 C -0.13 -1.73 7.97 37.16 0.30 -1.43 16 21 C 0.09 1.41 3.59 -6.55 -0.02 1.38 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.97 6.90 -51.93 -0.36 0.61 16 26 H 0.06 0.73 6.98 -51.93 -0.36 0.37 16 27 H 0.06 0.82 7.93 -51.93 -0.41 0.41 16 28 H 0.07 1.08 8.02 -51.93 -0.42 0.67 16 29 H 0.04 0.73 6.48 -51.93 -0.34 0.40 16 30 H 0.08 1.62 7.11 -51.93 -0.37 1.25 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.32 7.29 3.28 -39.29 -0.13 7.16 16 33 H 0.05 0.88 7.68 -51.93 -0.40 0.48 16 34 H 0.06 1.05 6.53 -51.93 -0.34 0.71 16 35 H 0.06 1.16 3.52 -51.93 -0.18 0.97 16 36 H 0.10 1.97 4.61 -51.93 -0.24 1.73 16 37 H 0.03 0.57 7.72 -51.92 -0.40 0.16 16 38 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 41 H 0.02 0.25 6.28 -51.93 -0.33 -0.08 16 42 H 0.06 0.84 7.77 -51.93 -0.40 0.44 16 LS Contribution 289.67 15.07 4.37 4.37 Total: -1.00 -29.42 289.67 -7.39 -36.80 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.09 Total: 7.24 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.58 Total: -53.26 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.16 Total: 17.31 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.42 -7.39 -36.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.128 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds