Wall clock time and date at job start Mon Mar 30 2020 03:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 N 1.46898 * 109.47370 * 185.22473 * 3 2 1 5 5 C 1.47696 * 110.99875 * 62.19379 * 4 3 2 6 6 C 1.50777 * 108.09448 * 151.97983 * 5 4 3 7 7 H 1.09001 * 108.99674 * 334.07059 * 6 5 4 8 8 C 1.50700 * 108.99407 * 215.24357 * 6 5 4 9 9 H 1.08004 * 119.99779 * 359.97438 * 8 6 5 10 10 C 1.37873 * 120.00427 * 180.02562 * 8 6 5 11 11 N 1.31517 * 120.00149 * 179.97438 * 10 8 6 12 12 Si 1.86803 * 119.99861 * 359.97438 * 10 8 6 13 13 H 1.48505 * 109.47073 * 89.99954 * 12 10 8 14 14 H 1.48499 * 109.47322 * 209.99994 * 12 10 8 15 15 H 1.48501 * 109.47064 * 330.00334 * 12 10 8 16 16 N 1.47744 * 111.91131 * 94.61594 * 6 5 4 17 17 C 1.48176 * 113.86262 * 318.81615 * 16 6 5 18 18 C 1.50742 * 112.87394 * 318.44297 * 17 16 6 19 19 C 1.52993 * 109.55925 * 332.63954 * 18 17 16 20 20 C 1.53005 * 109.55983 * 212.42042 * 18 17 16 21 21 C 1.40079 * 111.00235 * 293.55034 * 4 3 2 22 22 H 1.09005 * 109.47465 * 60.00884 * 1 2 3 23 23 H 1.09005 * 109.46875 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47999 * 300.00092 * 1 2 3 25 25 H 1.09003 * 109.47883 * 240.00025 * 2 1 3 26 26 H 1.08999 * 109.47637 * 119.99526 * 2 1 3 27 27 H 1.09001 * 109.47637 * 65.22382 * 3 2 1 28 28 H 1.09006 * 109.46985 * 305.22415 * 3 2 1 29 29 H 1.08992 * 109.73582 * 271.63352 * 5 4 3 30 30 H 1.09004 * 109.73529 * 32.33094 * 5 4 3 31 31 H 0.97001 * 119.99620 * 179.97438 * 11 10 8 32 32 H 1.00901 * 111.00551 * 192.80885 * 16 6 5 33 33 H 1.09001 * 108.96510 * 197.47264 * 17 16 6 34 34 H 1.08998 * 108.68880 * 79.22021 * 17 16 6 35 35 H 1.08998 * 109.47319 * 338.29391 * 19 18 17 36 36 H 1.08996 * 109.47731 * 98.29596 * 19 18 17 37 37 H 1.09009 * 109.47207 * 218.30159 * 19 18 17 38 38 H 1.09003 * 109.46946 * 180.21054 * 20 18 17 39 39 H 1.08994 * 109.47462 * 300.21563 * 20 18 17 40 40 H 1.08996 * 109.46575 * 60.21702 * 20 18 17 41 41 H 1.09006 * 109.07075 * 67.62496 * 21 4 3 42 42 H 1.08998 * 109.02182 * 308.63150 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5034 1.4445 -0.1261 5 6 3.9252 0.8394 -1.4057 6 6 5.2443 1.4532 -1.8017 7 1 5.3229 2.4442 -1.3547 8 6 5.2922 1.5871 -3.3020 9 1 4.4543 1.2606 -3.9003 10 6 6.4059 2.1254 -3.9109 11 7 6.4478 2.2418 -5.2202 12 14 7.8553 2.6894 -2.8761 13 1 8.8046 1.5614 -2.6974 14 1 8.5446 3.8128 -3.5602 15 1 7.3689 3.1422 -1.5481 16 7 6.3898 0.6338 -1.3552 17 6 6.2328 0.0765 0.0087 18 6 5.6406 1.0648 0.9809 19 6 5.9828 2.4882 0.5366 20 6 6.2108 0.8132 2.3782 21 6 4.1059 0.8866 1.0087 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3635 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.7550 1.9287 0.9330 28 1 1.6021 1.9826 -0.8396 29 1 4.0423 -0.2372 -1.2827 30 1 3.1788 1.0438 -2.1733 31 1 7.2313 2.6209 -5.6485 32 1 7.2550 1.1465 -1.4374 33 1 7.2093 -0.2370 0.3779 34 1 5.5828 -0.7969 -0.0436 35 1 6.8568 2.4655 -0.1143 36 1 5.1376 2.9130 -0.0049 37 1 6.1981 3.1004 1.4124 38 1 5.7789 1.5261 3.0806 39 1 5.9662 -0.2011 2.6933 40 1 7.2936 0.9356 2.3561 41 1 3.8716 -0.1772 1.0498 42 1 3.7069 1.3736 1.8985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220426215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:06 Heat of formation + Delta-G solvation = 11.621264 kcal Electronic energy + Delta-G solvation = -19283.720883 eV Core-core repulsion = 16684.836656 eV Total energy + Delta-G solvation = -2598.884228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46627 -37.54774 -35.83106 -33.79905 -33.53148 -30.27504 -28.39755 -27.60013 -27.55658 -25.56334 -24.16680 -22.33063 -20.61032 -19.72307 -18.77293 -17.86114 -16.73431 -16.41898 -16.26738 -15.98126 -15.34610 -15.08142 -14.75122 -14.53700 -13.95608 -13.67850 -13.57762 -13.27674 -13.14688 -12.91170 -12.75282 -12.47171 -12.31568 -12.23614 -12.15943 -11.93946 -11.76478 -11.64224 -11.43279 -11.32096 -11.25789 -10.89385 -10.70405 -8.98631 -8.82560 -8.25611 -6.28354 1.29453 1.35292 1.42338 2.34891 2.98763 3.12279 3.67119 3.74612 3.93267 4.03981 4.10165 4.21763 4.39257 4.49641 4.51024 4.54512 4.64692 4.69022 4.74394 4.80345 4.83716 4.86677 4.93908 4.95645 5.04678 5.06357 5.17572 5.23369 5.25870 5.30206 5.33783 5.41179 5.48123 5.66338 5.69789 6.21931 6.33149 6.47760 6.56275 6.68524 6.86548 7.38002 8.91016 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.009902 C = 0.007546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.234870 B = 2827.148221 C = 3709.481710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.157 4.157 3 C 0.062 3.938 4 N -0.562 5.562 5 C 0.101 3.899 6 C 0.175 3.825 7 H 0.043 0.957 8 C -0.504 4.504 9 H 0.030 0.970 10 C 0.016 3.984 11 N -0.952 5.952 12 Si 0.936 3.064 13 H -0.270 1.270 14 H -0.302 1.302 15 H -0.225 1.225 16 N -0.708 5.708 17 C 0.062 3.938 18 C -0.095 4.095 19 C -0.159 4.159 20 C -0.125 4.125 21 C 0.089 3.911 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.263 0.737 32 H 0.312 0.688 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.548 -2.380 18.073 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.196 4.196 3 C -0.065 4.065 4 N -0.284 5.284 5 C -0.026 4.026 6 C 0.068 3.932 7 H 0.060 0.940 8 C -0.544 4.544 9 H 0.049 0.951 10 C -0.181 4.181 11 N -0.593 5.593 12 Si 0.763 3.237 13 H -0.196 1.196 14 H -0.230 1.230 15 H -0.150 1.150 16 N -0.344 5.344 17 C -0.067 4.067 18 C -0.097 4.097 19 C -0.216 4.216 20 C -0.183 4.183 21 C -0.040 4.040 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.551 -2.428 17.637 18.649 hybrid contribution 0.770 0.025 -0.220 0.801 sum -4.781 -2.403 17.417 18.221 Atomic orbital electron populations 1.21641 0.94018 1.01994 1.02279 1.22123 0.97789 0.98387 1.01279 1.22273 0.85594 0.95778 1.02822 1.59132 1.07750 1.59164 1.02326 1.21498 0.96274 0.95326 0.89498 1.19698 0.87758 0.93241 0.92482 0.93995 1.21489 1.01944 1.38858 0.92077 0.95122 1.25834 1.01181 0.95340 0.95728 1.70067 1.30832 1.47668 1.10774 0.86132 0.79563 0.77455 0.80504 1.19580 1.22978 1.14953 1.61112 1.05085 1.44361 1.23876 1.22051 1.00615 0.96921 0.87112 1.21164 0.95591 0.95811 0.97145 1.22525 1.01944 0.96376 1.00726 1.21786 1.00574 1.02281 0.93659 1.21045 0.93450 0.96712 0.92792 0.92958 0.92424 0.91373 0.93981 0.91716 0.89217 0.91668 0.95332 0.92465 0.92849 0.86596 0.91294 0.92575 0.94563 0.90352 0.92302 0.91389 0.91658 0.92452 0.96159 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.91 71.98 0.71 -2.00 16 2 C -0.16 -3.76 5.38 30.59 0.16 -3.59 16 3 C 0.06 1.64 5.16 86.30 0.44 2.08 16 4 N -0.56 -18.11 3.01 -912.23 -2.74 -20.85 16 5 C 0.10 4.12 3.66 85.43 0.31 4.44 16 6 C 0.17 8.21 1.38 43.28 0.06 8.27 16 7 H 0.04 2.02 3.44 -2.39 -0.01 2.01 16 8 C -0.50 -29.57 9.21 25.60 0.24 -29.34 16 9 H 0.03 1.99 7.68 -2.91 -0.02 1.97 16 10 C 0.02 0.97 5.47 84.65 0.46 1.44 16 11 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 12 Si 0.94 45.05 24.46 68.60 1.68 46.72 16 13 H -0.27 -12.63 7.06 99.48 0.70 -11.93 16 14 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 15 H -0.23 -9.71 4.12 99.48 0.41 -9.30 16 16 N -0.71 -31.19 5.82 -498.13 -2.90 -34.09 16 17 C 0.06 2.12 5.29 85.32 0.45 2.57 16 18 C -0.09 -2.74 0.77 -52.40 -0.04 -2.78 16 19 C -0.16 -5.25 7.33 71.98 0.53 -4.73 16 20 C -0.12 -2.66 7.97 71.98 0.57 -2.09 16 21 C 0.09 2.46 3.59 88.05 0.32 2.78 16 22 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.04 1.21 6.90 -2.39 -0.02 1.19 16 26 H 0.06 1.46 6.98 -2.39 -0.02 1.44 16 27 H 0.09 1.95 7.93 -2.39 -0.02 1.93 16 28 H 0.06 1.84 8.02 -2.38 -0.02 1.82 16 29 H 0.03 1.19 6.48 -2.39 -0.02 1.17 16 30 H 0.06 2.52 7.11 -2.39 -0.02 2.50 16 31 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 32 H 0.31 13.93 3.28 -89.69 -0.29 13.63 16 33 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 34 H 0.06 1.93 6.53 -2.39 -0.02 1.92 16 35 H 0.04 1.34 3.52 -2.39 -0.01 1.33 16 36 H 0.08 2.93 4.61 -2.39 -0.01 2.92 16 37 H 0.06 1.64 7.72 -2.38 -0.02 1.63 16 38 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.19 8.09 -2.39 -0.02 1.18 16 41 H 0.02 0.56 6.28 -2.38 -0.01 0.55 16 42 H 0.08 1.97 7.77 -2.39 -0.02 1.95 16 Total: -1.00 -66.29 289.67 0.96 -65.34 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.40 Total: 26.74 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 4.22 Total: -22.95 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -5.34 Total: -115.85 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.68 Total: 46.72 kcal Total: -66.29 0.96 -65.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.958 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds