Wall clock time and date at job start Mon Mar 30 2020 03:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46896 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.40011 * 111.00233 * 62.02541 * 4 3 2 6 6 C 1.54198 * 112.08494 * 188.09646 * 5 4 3 7 7 H 1.09000 * 109.58000 * 41.12131 * 6 5 4 8 8 C 1.50699 * 109.57441 * 161.37383 * 6 5 4 9 9 H 1.08007 * 120.00080 * 0.02562 * 8 6 5 10 10 C 1.37878 * 120.00438 * 179.97438 * 8 6 5 11 11 N 1.31517 * 119.99648 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00252 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47278 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47102 * 120.00149 * 12 10 8 15 15 H 1.48491 * 109.47284 * 240.00057 * 12 10 8 16 16 N 1.44574 * 108.85150 * 281.17983 * 6 5 4 17 17 C 1.48066 * 113.85241 * 94.23092 * 16 6 5 18 18 C 1.53919 * 112.60642 * 318.21024 * 17 16 6 19 19 C 1.52994 * 109.26691 * 198.03277 * 18 17 16 20 20 C 1.53003 * 108.76244 * 79.31198 * 18 17 16 21 21 C 1.47913 * 111.00010 * 190.00130 * 4 3 2 22 22 H 1.09005 * 109.46917 * 60.00284 * 1 2 3 23 23 H 1.09000 * 109.47037 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47481 * 300.00425 * 1 2 3 25 25 H 1.09002 * 109.47035 * 239.99432 * 2 1 3 26 26 H 1.09001 * 109.46621 * 120.00135 * 2 1 3 27 27 H 1.08998 * 109.47248 * 59.99433 * 3 2 1 28 28 H 1.09005 * 109.46951 * 299.99695 * 3 2 1 29 29 H 1.08999 * 108.95971 * 308.76838 * 5 4 3 30 30 H 1.09006 * 108.95609 * 67.42697 * 5 4 3 31 31 H 0.96998 * 119.99640 * 179.97438 * 11 10 8 32 32 H 1.00900 * 110.99926 * 328.11983 * 16 6 5 33 33 H 1.08999 * 108.88331 * 79.09052 * 17 16 6 34 34 H 1.09000 * 108.88514 * 197.64823 * 17 16 6 35 35 H 1.08999 * 109.46467 * 182.63419 * 19 18 17 36 36 H 1.08992 * 109.47364 * 302.63305 * 19 18 17 37 37 H 1.09004 * 109.47256 * 62.64018 * 19 18 17 38 38 H 1.09002 * 109.46994 * 275.05077 * 20 18 17 39 39 H 1.08999 * 109.47031 * 35.04851 * 20 18 17 40 40 H 1.08998 * 109.46735 * 155.05484 * 20 18 17 41 41 H 1.08995 * 109.62685 * 273.49006 * 21 4 3 42 42 H 1.08996 * 109.63295 * 33.88715 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0113 0.8292 -1.1534 6 6 5.5397 0.6354 -1.0886 7 1 5.8244 0.3093 -0.0883 8 6 5.9602 -0.4028 -2.0968 9 1 5.2198 -0.8789 -2.7226 10 6 7.2903 -0.7441 -2.2211 11 7 8.1919 -0.1641 -1.4594 12 14 7.8114 -2.0315 -3.4703 13 1 6.6155 -2.5290 -4.1967 14 1 8.7614 -1.4261 -4.4381 15 1 8.4716 -3.1622 -2.7699 16 7 6.1834 1.8938 -1.3921 17 6 6.5249 2.6957 -0.1951 18 6 5.4073 2.6842 0.8632 19 6 5.6158 3.8514 1.8302 20 6 5.4851 1.3725 1.6470 21 6 4.0390 2.8024 0.2405 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9563 -0.8901 29 1 3.5357 -0.1443 -1.2728 30 1 3.7691 1.4482 -2.0174 31 1 9.1276 -0.4045 -1.5466 32 1 5.6336 2.4333 -2.0438 33 1 7.4361 2.2955 0.2494 34 1 6.7050 3.7264 -0.5005 35 1 4.8533 3.8190 2.6084 36 1 6.6031 3.7742 2.2855 37 1 5.5394 4.7925 1.2856 38 1 4.9413 0.5954 1.1097 39 1 6.5283 1.0761 1.7567 40 1 5.0411 1.5113 2.6327 41 1 4.1122 3.3389 -0.7055 42 1 3.3743 3.3406 0.9162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220426291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:09 Heat of formation + Delta-G solvation = 18.326480 kcal Electronic energy + Delta-G solvation = -19093.002393 eV Core-core repulsion = 16494.408925 eV Total energy + Delta-G solvation = -2598.593468 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64544 -35.85765 -33.94561 -32.45439 -31.46089 -28.29304 -26.66176 -26.36692 -25.31632 -23.68441 -22.61078 -20.75891 -19.50801 -17.93481 -16.51641 -15.34141 -15.27907 -14.98398 -14.41953 -14.22643 -13.93924 -13.39416 -12.96732 -12.59167 -12.38361 -12.13080 -11.88053 -11.76205 -11.71131 -11.23284 -11.19796 -10.94513 -10.80549 -10.75269 -10.61379 -10.46051 -10.21142 -10.12442 -9.85755 -9.71773 -9.32060 -8.78823 -8.22317 -7.45107 -6.59811 -5.75376 -3.85761 3.39399 3.47610 3.50386 4.38398 4.60578 5.16665 5.24516 5.29702 5.39516 5.49510 5.53264 5.60874 5.70699 5.75663 5.90279 5.94435 5.96318 6.06005 6.12851 6.13490 6.24919 6.27206 6.35609 6.37830 6.44550 6.46112 6.54713 6.77667 6.82192 6.87683 7.02192 7.15538 7.33956 7.62329 7.72039 7.98215 8.09247 8.47267 8.84782 8.98441 9.34710 9.80720 11.29826 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.009402 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.894283 B = 2977.385254 C = 4105.810520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.061 3.939 4 N -0.542 5.542 5 C 0.034 3.966 6 C 0.216 3.784 7 H 0.070 0.930 8 C -0.522 4.522 9 H 0.048 0.952 10 C 0.085 3.915 11 N -0.855 5.855 12 Si 0.880 3.120 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.287 1.287 16 N -0.655 5.655 17 C 0.082 3.918 18 C -0.097 4.097 19 C -0.133 4.133 20 C -0.140 4.140 21 C 0.078 3.922 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.071 0.929 30 H 0.001 0.999 31 H 0.252 0.748 32 H 0.303 0.697 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.027 0.973 41 H 0.029 0.971 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.863 5.128 5.193 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.067 4.067 4 N -0.265 5.265 5 C -0.096 4.096 6 C 0.108 3.892 7 H 0.087 0.913 8 C -0.561 4.561 9 H 0.067 0.933 10 C -0.121 4.121 11 N -0.491 5.491 12 Si 0.708 3.292 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.213 1.213 16 N -0.282 5.282 17 C -0.048 4.048 18 C -0.100 4.100 19 C -0.192 4.192 20 C -0.197 4.197 21 C -0.049 4.049 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.048 0.952 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.892 4.572 5.562 11.442 hybrid contribution -0.769 0.257 -1.210 1.457 sum -9.662 4.829 4.352 11.645 Atomic orbital electron populations 1.21729 0.96265 1.01357 1.01244 1.21612 0.94644 0.96913 1.03163 1.22084 0.88395 0.96722 0.99480 1.59363 1.05544 1.20160 1.41428 1.22134 1.02069 0.97737 0.87687 1.19438 0.83101 0.87326 0.99354 0.91304 1.21024 0.92599 1.20674 1.21824 0.93330 1.24850 0.96760 0.95247 0.95193 1.70054 1.00651 1.40455 1.37934 0.86775 0.78518 0.81899 0.81994 1.20101 1.21285 1.21336 1.59870 1.51979 1.04610 1.11711 1.22425 0.96219 0.95650 0.90510 1.21119 0.95538 0.96095 0.97266 1.21889 1.01183 0.97532 0.98563 1.22270 1.01263 0.98278 0.97919 1.21769 0.95953 0.88562 0.98612 0.93185 0.92801 0.93074 0.91372 0.91188 0.91826 0.95975 0.91099 0.98104 0.93799 0.88007 0.91358 0.94467 0.93500 0.92814 0.93653 0.87834 0.93702 0.95387 0.95244 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.13 -1.75 5.73 -26.73 -0.15 -1.90 16 3 C 0.06 0.90 4.94 -3.83 -0.02 0.88 16 4 N -0.54 -9.57 2.34 -239.76 -0.56 -10.13 16 5 C 0.03 0.71 4.01 -6.76 -0.03 0.68 16 6 C 0.22 5.23 1.91 -69.48 -0.13 5.10 16 7 H 0.07 1.81 4.32 -51.93 -0.22 1.58 16 8 C -0.52 -14.33 8.68 -34.44 -0.30 -14.63 16 9 H 0.05 1.33 7.72 -52.48 -0.41 0.93 16 10 C 0.08 2.37 5.39 -17.82 -0.10 2.28 16 11 N -0.85 -24.74 12.80 55.43 0.71 -24.03 16 12 Si 0.88 21.55 29.54 -169.99 -5.02 16.53 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 N -0.65 -15.34 5.45 -107.48 -0.59 -15.93 16 17 C 0.08 1.69 5.51 -2.70 -0.01 1.67 16 18 C -0.10 -1.70 0.73 -155.13 -0.11 -1.82 16 19 C -0.13 -1.94 7.96 37.15 0.30 -1.65 16 20 C -0.14 -2.66 7.09 37.16 0.26 -2.40 16 21 C 0.08 1.31 4.64 -4.37 -0.02 1.29 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 1.05 6.27 -51.93 -0.33 0.72 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.86 7.81 -51.93 -0.41 0.46 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 1.49 5.57 -51.93 -0.29 1.20 16 30 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 32 H 0.30 6.82 7.50 -39.29 -0.29 6.53 16 33 H 0.07 1.58 7.60 -51.93 -0.39 1.18 16 34 H 0.04 0.70 7.98 -51.93 -0.41 0.28 16 35 H 0.05 0.63 8.01 -51.93 -0.42 0.21 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 2.17 4.02 -51.93 -0.21 1.96 16 39 H 0.04 0.92 7.51 -51.93 -0.39 0.53 16 40 H 0.03 0.47 7.85 -51.93 -0.41 0.06 16 41 H 0.03 0.52 7.13 -51.93 -0.37 0.15 16 42 H 0.06 0.92 7.21 -51.93 -0.37 0.54 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -28.03 307.32 -8.18 -36.21 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.41 Total: 4.48 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 0.05 Total: -11.77 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.44 Total: -50.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.03 -8.18 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.538 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds