Wall clock time and date at job start Mon Mar 30 2020 03:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46896 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.40011 * 111.00233 * 62.02541 * 4 3 2 6 6 C 1.54198 * 112.08494 * 188.09646 * 5 4 3 7 7 H 1.09000 * 109.58000 * 41.12131 * 6 5 4 8 8 C 1.50699 * 109.57441 * 161.37383 * 6 5 4 9 9 H 1.08007 * 120.00080 * 0.02562 * 8 6 5 10 10 C 1.37878 * 120.00438 * 179.97438 * 8 6 5 11 11 N 1.31517 * 119.99648 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00252 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47278 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47102 * 120.00149 * 12 10 8 15 15 H 1.48491 * 109.47284 * 240.00057 * 12 10 8 16 16 N 1.44574 * 108.85150 * 281.17983 * 6 5 4 17 17 C 1.48066 * 113.85241 * 94.23092 * 16 6 5 18 18 C 1.53919 * 112.60642 * 318.21024 * 17 16 6 19 19 C 1.52994 * 109.26691 * 198.03277 * 18 17 16 20 20 C 1.53003 * 108.76244 * 79.31198 * 18 17 16 21 21 C 1.47913 * 111.00010 * 190.00130 * 4 3 2 22 22 H 1.09005 * 109.46917 * 60.00284 * 1 2 3 23 23 H 1.09000 * 109.47037 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47481 * 300.00425 * 1 2 3 25 25 H 1.09002 * 109.47035 * 239.99432 * 2 1 3 26 26 H 1.09001 * 109.46621 * 120.00135 * 2 1 3 27 27 H 1.08998 * 109.47248 * 59.99433 * 3 2 1 28 28 H 1.09005 * 109.46951 * 299.99695 * 3 2 1 29 29 H 1.08999 * 108.95971 * 308.76838 * 5 4 3 30 30 H 1.09006 * 108.95609 * 67.42697 * 5 4 3 31 31 H 0.96998 * 119.99640 * 179.97438 * 11 10 8 32 32 H 1.00900 * 110.99926 * 328.11983 * 16 6 5 33 33 H 1.08999 * 108.88331 * 79.09052 * 17 16 6 34 34 H 1.09000 * 108.88514 * 197.64823 * 17 16 6 35 35 H 1.08999 * 109.46467 * 182.63419 * 19 18 17 36 36 H 1.08992 * 109.47364 * 302.63305 * 19 18 17 37 37 H 1.09004 * 109.47256 * 62.64018 * 19 18 17 38 38 H 1.09002 * 109.46994 * 275.05077 * 20 18 17 39 39 H 1.08999 * 109.47031 * 35.04851 * 20 18 17 40 40 H 1.08998 * 109.46735 * 155.05484 * 20 18 17 41 41 H 1.08995 * 109.62685 * 273.49006 * 21 4 3 42 42 H 1.08996 * 109.63295 * 33.88715 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0113 0.8292 -1.1534 6 6 5.5397 0.6354 -1.0886 7 1 5.8244 0.3093 -0.0883 8 6 5.9602 -0.4028 -2.0968 9 1 5.2198 -0.8789 -2.7226 10 6 7.2903 -0.7441 -2.2211 11 7 8.1919 -0.1641 -1.4594 12 14 7.8114 -2.0315 -3.4703 13 1 6.6155 -2.5290 -4.1967 14 1 8.7614 -1.4261 -4.4381 15 1 8.4716 -3.1622 -2.7699 16 7 6.1834 1.8938 -1.3921 17 6 6.5249 2.6957 -0.1951 18 6 5.4073 2.6842 0.8632 19 6 5.6158 3.8514 1.8302 20 6 5.4851 1.3725 1.6470 21 6 4.0390 2.8024 0.2405 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9563 -0.8901 29 1 3.5357 -0.1443 -1.2728 30 1 3.7691 1.4482 -2.0174 31 1 9.1276 -0.4045 -1.5466 32 1 5.6336 2.4333 -2.0438 33 1 7.4361 2.2955 0.2494 34 1 6.7050 3.7264 -0.5005 35 1 4.8533 3.8190 2.6084 36 1 6.6031 3.7742 2.2855 37 1 5.5394 4.7925 1.2856 38 1 4.9413 0.5954 1.1097 39 1 6.5283 1.0761 1.7567 40 1 5.0411 1.5113 2.6327 41 1 4.1122 3.3389 -0.7055 42 1 3.3743 3.3406 0.9162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220426291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:09 Heat of formation + Delta-G solvation = 1.313293 kcal Electronic energy + Delta-G solvation = -19093.740140 eV Core-core repulsion = 16494.408925 eV Total energy + Delta-G solvation = -2599.331215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16626 -37.21619 -35.73435 -33.74259 -33.38595 -30.00608 -28.05522 -27.62563 -27.02497 -25.43469 -23.95794 -22.23001 -21.11061 -19.41386 -18.47391 -16.85287 -16.78996 -16.46055 -16.23546 -15.79270 -15.40599 -14.81384 -14.22435 -14.15695 -13.99713 -13.53933 -13.18666 -13.15364 -13.00713 -12.94604 -12.75277 -12.51926 -12.40635 -12.33348 -12.10484 -11.98864 -11.80504 -11.58833 -11.35271 -11.19054 -11.05154 -10.74392 -10.30951 -8.90268 -8.42499 -7.86662 -6.05573 1.42676 1.45209 1.54685 2.50972 3.08406 3.32448 3.91230 4.00221 4.06692 4.10160 4.19898 4.30514 4.45951 4.53644 4.60931 4.64869 4.66318 4.72333 4.79701 4.86608 4.91731 4.94173 4.98796 5.11886 5.18610 5.22542 5.27936 5.30209 5.33089 5.44685 5.46364 5.55134 5.61632 5.83949 5.94907 6.34875 6.39250 6.54077 6.83527 7.18197 7.39096 7.64950 9.14724 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.009402 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.894283 B = 2977.385254 C = 4105.810520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.062 3.938 4 N -0.550 5.550 5 C 0.058 3.942 6 C 0.218 3.782 7 H 0.047 0.953 8 C -0.540 4.540 9 H 0.041 0.959 10 C 0.037 3.963 11 N -0.884 5.884 12 Si 0.941 3.059 13 H -0.271 1.271 14 H -0.286 1.286 15 H -0.283 1.283 16 N -0.676 5.676 17 C 0.087 3.913 18 C -0.092 4.092 19 C -0.126 4.126 20 C -0.132 4.132 21 C 0.081 3.919 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.025 0.975 29 H 0.061 0.939 30 H -0.008 1.008 31 H 0.250 0.750 32 H 0.307 0.693 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.015 0.985 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 6.157 5.814 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.064 4.064 4 N -0.273 5.273 5 C -0.074 4.074 6 C 0.110 3.890 7 H 0.065 0.935 8 C -0.579 4.579 9 H 0.059 0.941 10 C -0.165 4.165 11 N -0.521 5.521 12 Si 0.768 3.232 13 H -0.196 1.196 14 H -0.213 1.213 15 H -0.209 1.209 16 N -0.304 5.304 17 C -0.043 4.043 18 C -0.095 4.095 19 C -0.185 4.185 20 C -0.189 4.189 21 C -0.046 4.046 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.010 0.990 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.685 5.603 6.188 13.559 hybrid contribution -0.219 -0.068 -1.379 1.398 sum -10.904 5.535 4.809 13.140 Atomic orbital electron populations 1.21670 0.93801 1.02210 1.02187 1.21582 0.96758 0.96141 1.01699 1.22176 0.86189 0.97465 1.00618 1.59277 1.07507 1.20818 1.39687 1.21676 0.99490 0.97565 0.88629 1.19207 0.85587 0.87154 0.97090 0.93519 1.21440 0.92691 1.21657 1.22140 0.94082 1.25533 0.96936 0.97135 0.96926 1.70185 1.00664 1.41892 1.39352 0.85812 0.78023 0.79617 0.79773 1.19600 1.21268 1.20939 1.59580 1.52371 1.04894 1.13508 1.22305 0.96107 0.95524 0.90321 1.21028 0.94991 0.96704 0.96740 1.21817 1.01780 0.96545 0.98318 1.22127 0.99139 0.98558 0.99043 1.21805 0.95784 0.88093 0.98926 0.92742 0.92091 0.91565 0.93556 0.91971 0.89514 0.95723 0.92044 0.99028 0.94050 0.87602 0.94842 0.92780 0.91470 0.93090 0.92028 0.89953 0.96597 0.93182 0.95784 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.91 71.98 0.71 -2.07 16 2 C -0.12 -3.27 5.73 30.59 0.18 -3.10 16 3 C 0.06 1.70 4.94 86.30 0.43 2.13 16 4 N -0.55 -18.71 2.34 -912.46 -2.13 -20.84 16 5 C 0.06 2.39 4.01 87.95 0.35 2.75 16 6 C 0.22 10.84 1.91 45.01 0.09 10.93 16 7 H 0.05 2.55 4.32 -2.39 -0.01 2.54 16 8 C -0.54 -30.40 8.68 25.60 0.22 -30.18 16 9 H 0.04 2.30 7.72 -2.91 -0.02 2.28 16 10 C 0.04 2.11 5.39 84.65 0.46 2.57 16 11 N -0.88 -52.61 12.80 21.45 0.27 -52.34 16 12 Si 0.94 45.11 29.54 68.60 2.03 47.14 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 16 N -0.68 -32.27 5.45 -493.95 -2.69 -34.97 16 17 C 0.09 3.60 5.51 86.39 0.48 4.07 16 18 C -0.09 -3.09 0.73 -52.59 -0.04 -3.13 16 19 C -0.13 -3.29 7.96 71.98 0.57 -2.72 16 20 C -0.13 -4.96 7.09 71.98 0.51 -4.45 16 21 C 0.08 2.51 4.64 85.40 0.40 2.91 16 22 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.41 6.27 -2.39 -0.01 1.40 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 2.00 7.81 -2.39 -0.02 1.98 16 28 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 2.64 5.57 -2.39 -0.01 2.62 16 30 H -0.01 -0.35 7.57 -2.38 -0.02 -0.37 16 31 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.31 13.95 7.50 -89.69 -0.67 13.28 16 33 H 0.03 1.60 7.60 -2.39 -0.02 1.58 16 34 H 0.05 2.00 7.98 -2.39 -0.02 1.98 16 35 H 0.07 1.51 8.01 -2.39 -0.02 1.49 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 3.49 4.02 -2.39 -0.01 3.48 16 39 H 0.01 0.65 7.51 -2.39 -0.02 0.63 16 40 H 0.05 1.62 7.85 -2.39 -0.02 1.60 16 41 H 0.02 0.79 7.13 -2.39 -0.02 0.77 16 42 H 0.09 2.34 7.21 -2.39 -0.02 2.32 16 Total: -1.00 -61.47 307.32 2.13 -59.34 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.31 Total: 21.95 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 4.35 Total: -20.29 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -4.55 Total: -108.14 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -61.47 2.13 -59.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.657 kcal (2) G-P(sol) polarization free energy of solvation -61.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds