Wall clock time and date at job start Mon Mar 30 2020 03:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47362 * 2 1 4 4 N 1.46904 * 109.46993 * 120.00106 * 2 1 3 5 5 C 1.44572 * 111.00078 * 66.18703 * 4 2 1 6 6 C 1.54196 * 108.85021 * 220.35094 * 5 4 2 7 7 H 1.08995 * 108.96157 * 41.85314 * 6 5 4 8 8 C 1.50703 * 108.89077 * 160.56433 * 6 5 4 9 9 H 1.08003 * 119.99995 * 2.52204 * 8 6 5 10 10 C 1.37877 * 120.00232 * 182.53203 * 8 6 5 11 11 N 1.31518 * 119.99834 * 359.97438 * 10 8 6 12 12 Si 1.86794 * 120.00005 * 179.97438 * 10 8 6 13 13 H 1.48489 * 109.47599 * 59.99454 * 12 10 8 14 14 H 1.48501 * 109.46894 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46866 * 299.99147 * 12 10 8 16 16 N 1.40020 * 112.08455 * 281.17964 * 6 5 4 17 17 C 1.47915 * 114.05880 * 61.80943 * 16 6 5 18 18 C 1.50802 * 108.49864 * 280.07284 * 17 16 6 19 19 C 1.52999 * 108.95517 * 331.88180 * 18 17 16 20 20 C 1.53002 * 108.88815 * 213.18098 * 18 17 16 21 21 C 1.48064 * 110.99958 * 193.87933 * 4 2 1 22 22 H 1.08996 * 109.46999 * 300.00020 * 1 2 3 23 23 H 1.08997 * 109.46744 * 60.00082 * 1 2 3 24 24 H 1.08996 * 109.46747 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47508 * 239.99864 * 2 1 3 26 26 H 1.08993 * 109.47604 * 185.53011 * 3 2 1 27 27 H 1.09001 * 109.47412 * 305.53511 * 3 2 1 28 28 H 1.09007 * 109.46977 * 65.53063 * 3 2 1 29 29 H 1.09007 * 109.57260 * 100.53703 * 5 4 2 30 30 H 1.08998 * 109.68084 * 340.22426 * 5 4 2 31 31 H 0.96997 * 119.99886 * 180.02562 * 11 10 8 32 32 H 1.00900 * 111.00022 * 188.09264 * 16 6 5 33 33 H 1.08992 * 109.63410 * 39.78242 * 17 16 6 34 34 H 1.09003 * 109.62515 * 160.37351 * 17 16 6 35 35 H 1.09001 * 109.46526 * 158.59353 * 19 18 17 36 36 H 1.08997 * 109.46977 * 278.58756 * 19 18 17 37 37 H 1.08992 * 109.47219 * 38.59246 * 19 18 17 38 38 H 1.09003 * 109.47081 * 297.46149 * 20 18 17 39 39 H 1.09004 * 109.46448 * 57.45752 * 20 18 17 40 40 H 1.08996 * 109.47197 * 177.46029 * 20 18 17 41 41 H 1.08996 * 108.87886 * 312.96784 * 21 4 2 42 42 H 1.08998 * 108.88055 * 71.52502 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6786 -2.0970 1.1624 6 6 1.2439 -2.5415 2.5734 7 1 0.6101 -1.7688 3.0086 8 6 0.4512 -3.8182 2.4602 9 1 0.3120 -4.2837 1.4956 10 6 -0.0967 -4.3919 3.5879 11 7 0.0730 -3.8252 4.7626 12 14 -1.0798 -5.9739 3.4474 13 1 -0.2184 -7.0436 2.8831 14 1 -1.5567 -6.3815 4.7934 15 1 -2.2457 -5.7544 2.5542 16 7 2.3395 -2.7599 3.4175 17 6 3.1682 -1.5576 3.6532 18 6 4.0784 -1.3636 2.4666 19 6 4.3568 -2.7249 1.8260 20 6 5.3999 -0.7622 2.9491 21 6 3.4618 -0.4319 1.4111 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1255 1.4441 -0.0990 27 1 1.5981 1.9842 -0.8363 28 1 1.7599 1.9269 0.9354 29 1 2.5475 -2.6756 0.8486 30 1 0.8602 -2.2576 0.4606 31 1 -0.3120 -4.2290 5.5560 32 1 2.0471 -3.1742 4.2898 33 1 2.5243 -0.6856 3.7673 34 1 3.7657 -1.6957 4.5544 35 1 4.6747 -2.5821 0.7932 36 1 5.1446 -3.2335 2.3816 37 1 3.4496 -3.3286 1.8469 38 1 5.2143 0.2184 3.3874 39 1 5.8447 -1.4169 3.6986 40 1 6.0821 -0.6598 2.1052 41 1 3.9878 -0.5716 0.4668 42 1 3.5896 0.6006 1.7362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220426450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:14 Heat of formation + Delta-G solvation = 18.507560 kcal Electronic energy + Delta-G solvation = -19286.874684 eV Core-core repulsion = 16688.289069 eV Total energy + Delta-G solvation = -2598.585616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.42332 -35.99617 -34.45448 -31.59177 -30.97659 -28.34374 -27.08807 -26.68620 -25.00286 -23.81424 -23.42651 -19.90801 -19.11657 -17.90821 -16.51358 -15.74423 -15.18986 -14.64728 -14.42558 -13.87796 -13.79683 -13.42746 -12.71695 -12.61970 -12.32932 -12.00548 -11.83172 -11.79717 -11.63312 -11.34144 -11.18168 -11.02624 -10.87293 -10.75701 -10.51912 -10.42421 -10.32962 -10.04791 -9.72629 -9.53521 -9.36061 -8.95845 -8.52566 -7.35253 -6.49051 -6.03307 -4.06920 3.33532 3.38107 3.40852 4.38317 4.54342 5.20277 5.29025 5.33965 5.37647 5.44607 5.62462 5.71612 5.88162 5.92356 5.97060 6.06097 6.11783 6.19752 6.20750 6.22987 6.31116 6.38676 6.42555 6.46370 6.51484 6.60699 6.70111 6.74886 6.81227 6.91544 7.00921 7.04479 7.52837 7.67314 7.87263 7.91850 8.14077 8.32849 8.86373 9.29524 9.39327 9.62123 11.05763 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.009110 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.630247 B = 3072.752505 C = 3880.807815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 C -0.145 4.145 4 N -0.544 5.544 5 C 0.048 3.952 6 C 0.236 3.764 7 H -0.007 1.007 8 C -0.505 4.505 9 H 0.056 0.944 10 C 0.065 3.935 11 N -0.902 5.902 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.279 1.279 16 N -0.686 5.686 17 C 0.076 3.924 18 C -0.063 4.063 19 C -0.151 4.151 20 C -0.135 4.135 21 C 0.081 3.919 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.264 0.736 32 H 0.367 0.633 33 H 0.030 0.970 34 H 0.046 0.954 35 H 0.023 0.977 36 H 0.038 0.962 37 H 0.119 0.881 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.019 0.981 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 7.008 -5.911 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.203 4.203 4 N -0.269 5.269 5 C -0.079 4.079 6 C 0.126 3.874 7 H 0.010 0.990 8 C -0.544 4.544 9 H 0.074 0.926 10 C -0.136 4.136 11 N -0.543 5.543 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.205 1.205 16 N -0.324 5.324 17 C -0.054 4.054 18 C -0.064 4.064 19 C -0.208 4.208 20 C -0.193 4.193 21 C -0.046 4.046 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.194 0.806 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.137 0.863 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.123 6.960 -5.830 10.951 hybrid contribution -0.622 -0.621 -0.121 0.887 sum 5.501 6.339 -5.951 10.289 Atomic orbital electron populations 1.21856 0.94547 1.02561 1.01009 1.21537 0.95733 0.94097 0.91290 1.21924 1.00368 0.96220 1.01778 1.60916 1.14694 1.14123 1.37161 1.22658 0.99480 0.85141 1.00621 1.17809 0.87374 0.94533 0.87701 0.98980 1.21264 1.30929 1.08684 0.93560 0.92612 1.24967 0.95896 0.97325 0.95391 1.69619 1.46424 1.39825 0.98418 0.86598 0.80253 0.83746 0.76976 1.20267 1.21416 1.20462 1.58183 1.26717 1.25623 1.21879 1.21452 0.95416 0.94191 0.94336 1.20400 0.94531 0.95425 0.96094 1.22404 1.04324 0.97555 0.96510 1.21918 0.96864 1.00261 1.00305 1.22408 0.87461 0.98467 0.96308 0.92019 0.93348 0.91881 0.95367 0.93135 0.92949 0.91940 0.92736 0.92412 0.92638 0.80550 0.95151 0.93511 0.95839 0.94299 0.86344 0.93330 0.92698 0.93594 0.96267 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.16 37.16 0.34 -1.91 16 2 C 0.08 1.32 2.59 -67.71 -0.18 1.14 16 3 C -0.15 -1.95 8.29 37.16 0.31 -1.65 16 4 N -0.54 -10.23 3.83 -226.33 -0.87 -11.10 16 5 C 0.05 1.04 4.36 -4.45 -0.02 1.02 16 6 C 0.24 5.91 1.98 -71.79 -0.14 5.77 16 7 H -0.01 -0.21 8.07 -51.93 -0.42 -0.63 16 8 C -0.50 -13.66 8.62 -34.44 -0.30 -13.96 16 9 H 0.06 1.49 7.71 -52.48 -0.40 1.09 16 10 C 0.06 1.77 5.27 -17.82 -0.09 1.67 16 11 N -0.90 -25.22 11.44 55.43 0.63 -24.58 16 12 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 N -0.69 -16.28 4.07 -112.23 -0.46 -16.74 16 17 C 0.08 1.55 5.54 -4.37 -0.02 1.53 16 18 C -0.06 -1.11 0.72 -155.25 -0.11 -1.22 16 19 C -0.15 -2.77 7.07 37.16 0.26 -2.51 16 20 C -0.14 -1.96 7.97 37.16 0.30 -1.66 16 21 C 0.08 1.38 3.27 -2.82 -0.01 1.37 16 22 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.10 6.39 -51.93 -0.33 0.77 16 25 H 0.03 0.46 8.11 -51.93 -0.42 0.04 16 26 H 0.05 0.65 6.86 -51.93 -0.36 0.29 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.05 1.17 4.29 -51.92 -0.22 0.95 16 30 H 0.06 1.25 5.69 -51.93 -0.30 0.95 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.37 9.61 6.35 -39.29 -0.25 9.36 16 33 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 34 H 0.05 0.90 7.66 -51.93 -0.40 0.50 16 35 H 0.02 0.39 7.55 -51.93 -0.39 0.00 16 36 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 37 H 0.12 2.56 3.98 -51.93 -0.21 2.35 16 38 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.05 0.77 8.00 -51.93 -0.42 0.36 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.02 0.32 7.42 -51.93 -0.39 -0.07 16 42 H 0.06 0.96 6.89 -51.93 -0.36 0.60 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -26.91 302.62 -8.15 -35.06 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.33 Total: 7.07 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 0.33 Total: -10.41 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.69 Total: -52.42 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.91 -8.15 -35.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.568 kcal (2) G-P(sol) polarization free energy of solvation -26.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds