Wall clock time and date at job start Mon Mar 30 2020 03:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47362 * 2 1 4 4 N 1.46904 * 109.46993 * 120.00106 * 2 1 3 5 5 C 1.44572 * 111.00078 * 66.18703 * 4 2 1 6 6 C 1.54196 * 108.85021 * 220.35094 * 5 4 2 7 7 H 1.08995 * 108.96157 * 41.85314 * 6 5 4 8 8 C 1.50703 * 108.89077 * 160.56433 * 6 5 4 9 9 H 1.08003 * 119.99995 * 2.52204 * 8 6 5 10 10 C 1.37877 * 120.00232 * 182.53203 * 8 6 5 11 11 N 1.31518 * 119.99834 * 359.97438 * 10 8 6 12 12 Si 1.86794 * 120.00005 * 179.97438 * 10 8 6 13 13 H 1.48489 * 109.47599 * 59.99454 * 12 10 8 14 14 H 1.48501 * 109.46894 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46866 * 299.99147 * 12 10 8 16 16 N 1.40020 * 112.08455 * 281.17964 * 6 5 4 17 17 C 1.47915 * 114.05880 * 61.80943 * 16 6 5 18 18 C 1.50802 * 108.49864 * 280.07284 * 17 16 6 19 19 C 1.52999 * 108.95517 * 331.88180 * 18 17 16 20 20 C 1.53002 * 108.88815 * 213.18098 * 18 17 16 21 21 C 1.48064 * 110.99958 * 193.87933 * 4 2 1 22 22 H 1.08996 * 109.46999 * 300.00020 * 1 2 3 23 23 H 1.08997 * 109.46744 * 60.00082 * 1 2 3 24 24 H 1.08996 * 109.46747 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47508 * 239.99864 * 2 1 3 26 26 H 1.08993 * 109.47604 * 185.53011 * 3 2 1 27 27 H 1.09001 * 109.47412 * 305.53511 * 3 2 1 28 28 H 1.09007 * 109.46977 * 65.53063 * 3 2 1 29 29 H 1.09007 * 109.57260 * 100.53703 * 5 4 2 30 30 H 1.08998 * 109.68084 * 340.22426 * 5 4 2 31 31 H 0.96997 * 119.99886 * 180.02562 * 11 10 8 32 32 H 1.00900 * 111.00022 * 188.09264 * 16 6 5 33 33 H 1.08992 * 109.63410 * 39.78242 * 17 16 6 34 34 H 1.09003 * 109.62515 * 160.37351 * 17 16 6 35 35 H 1.09001 * 109.46526 * 158.59353 * 19 18 17 36 36 H 1.08997 * 109.46977 * 278.58756 * 19 18 17 37 37 H 1.08992 * 109.47219 * 38.59246 * 19 18 17 38 38 H 1.09003 * 109.47081 * 297.46149 * 20 18 17 39 39 H 1.09004 * 109.46448 * 57.45752 * 20 18 17 40 40 H 1.08996 * 109.47197 * 177.46029 * 20 18 17 41 41 H 1.08996 * 108.87886 * 312.96784 * 21 4 2 42 42 H 1.08998 * 108.88055 * 71.52502 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6786 -2.0970 1.1624 6 6 1.2439 -2.5415 2.5734 7 1 0.6101 -1.7688 3.0086 8 6 0.4512 -3.8182 2.4602 9 1 0.3120 -4.2837 1.4956 10 6 -0.0967 -4.3919 3.5879 11 7 0.0730 -3.8252 4.7626 12 14 -1.0798 -5.9739 3.4474 13 1 -0.2184 -7.0436 2.8831 14 1 -1.5567 -6.3815 4.7934 15 1 -2.2457 -5.7544 2.5542 16 7 2.3395 -2.7599 3.4175 17 6 3.1682 -1.5576 3.6532 18 6 4.0784 -1.3636 2.4666 19 6 4.3568 -2.7249 1.8260 20 6 5.3999 -0.7622 2.9491 21 6 3.4618 -0.4319 1.4111 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1255 1.4441 -0.0990 27 1 1.5981 1.9842 -0.8363 28 1 1.7599 1.9269 0.9354 29 1 2.5475 -2.6756 0.8486 30 1 0.8602 -2.2576 0.4606 31 1 -0.3120 -4.2290 5.5560 32 1 2.0471 -3.1742 4.2898 33 1 2.5243 -0.6856 3.7673 34 1 3.7657 -1.6957 4.5544 35 1 4.6747 -2.5821 0.7932 36 1 5.1446 -3.2335 2.3816 37 1 3.4496 -3.3286 1.8469 38 1 5.2143 0.2184 3.3874 39 1 5.8447 -1.4169 3.6986 40 1 6.0821 -0.6598 2.1052 41 1 3.9878 -0.5716 0.4668 42 1 3.5896 0.6006 1.7362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220426450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:14 Heat of formation + Delta-G solvation = 1.820378 kcal Electronic energy + Delta-G solvation = -19287.598295 eV Core-core repulsion = 16688.289069 eV Total energy + Delta-G solvation = -2599.309226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97632 -37.45284 -36.21126 -33.54476 -32.43637 -29.89982 -28.62360 -28.06002 -26.49802 -25.53471 -25.03536 -21.47805 -20.70591 -19.43623 -18.44180 -17.42697 -16.77364 -16.46658 -15.85343 -15.58037 -15.27501 -14.91552 -14.31924 -14.07174 -13.69657 -13.57124 -13.45749 -13.04253 -13.00423 -12.82962 -12.76090 -12.62635 -12.50930 -12.29893 -12.15235 -11.95116 -11.75151 -11.49185 -11.42349 -11.20441 -10.94975 -10.82693 -10.59175 -8.84630 -8.42555 -8.11469 -6.23799 1.43341 1.44844 1.52254 2.43952 3.09931 3.14609 3.88556 3.98998 4.09340 4.14194 4.26208 4.40712 4.48448 4.59730 4.65200 4.76466 4.81728 4.83738 4.87767 4.92420 4.94078 4.97811 4.98415 5.06359 5.09451 5.10019 5.22217 5.32454 5.41102 5.43062 5.45888 5.50919 5.60952 5.87811 5.98973 6.23212 6.48479 6.56054 6.76395 7.29508 7.41590 7.50278 8.95490 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.009110 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.630247 B = 3072.752505 C = 3880.807815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 C -0.137 4.137 4 N -0.562 5.562 5 C 0.066 3.934 6 C 0.247 3.753 7 H -0.061 1.061 8 C -0.527 4.527 9 H 0.052 0.948 10 C 0.020 3.980 11 N -0.925 5.925 12 Si 0.959 3.041 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.275 1.275 16 N -0.686 5.686 17 C 0.079 3.921 18 C -0.064 4.064 19 C -0.145 4.145 20 C -0.128 4.128 21 C 0.082 3.918 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.349 0.651 33 H 0.009 0.991 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 7.689 -7.196 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.194 4.194 4 N -0.287 5.287 5 C -0.062 4.062 6 C 0.136 3.864 7 H -0.043 1.043 8 C -0.567 4.567 9 H 0.071 0.929 10 C -0.179 4.179 11 N -0.567 5.567 12 Si 0.785 3.215 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.200 1.200 16 N -0.321 5.321 17 C -0.050 4.050 18 C -0.065 4.065 19 C -0.202 4.202 20 C -0.186 4.186 21 C -0.045 4.045 22 H 0.064 0.936 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.173 0.827 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.466 7.662 -7.138 12.860 hybrid contribution -1.051 -0.799 0.293 1.353 sum 6.415 6.862 -6.844 11.623 Atomic orbital electron populations 1.21831 0.94833 1.01146 1.01761 1.21675 0.95599 0.95619 0.90158 1.21853 1.01112 0.94067 1.02362 1.60812 1.16313 1.12467 1.39149 1.22285 0.99113 0.87072 0.97751 1.17639 0.86947 0.92174 0.89643 1.04346 1.21602 1.31818 1.09652 0.93585 0.92948 1.25711 0.96830 1.00294 0.95053 1.69749 1.46984 1.41027 0.98899 0.85601 0.78863 0.80018 0.77006 1.19676 1.21009 1.20048 1.58229 1.26092 1.27106 1.20692 1.21532 0.95103 0.91864 0.96534 1.20419 0.95530 0.95652 0.94884 1.22257 1.02801 0.97432 0.97676 1.21835 0.95027 1.00527 1.01182 1.22464 0.86277 0.99011 0.96725 0.93562 0.90219 0.94355 0.94854 0.92051 0.90557 0.92811 0.92528 0.93317 0.92666 0.82662 0.97290 0.92579 0.94321 0.93644 0.89786 0.92262 0.92424 0.91538 0.94848 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.16 71.98 0.66 -3.65 16 2 C 0.08 2.37 2.59 44.92 0.12 2.49 16 3 C -0.14 -3.28 8.29 71.98 0.60 -2.68 16 4 N -0.56 -20.94 3.83 -869.98 -3.34 -24.27 16 5 C 0.07 2.88 4.36 87.14 0.38 3.26 16 6 C 0.25 12.87 1.98 45.82 0.09 12.96 16 7 H -0.06 -3.72 8.07 -2.39 -0.02 -3.74 16 8 C -0.53 -29.53 8.62 25.60 0.22 -29.31 16 9 H 0.05 2.88 7.71 -2.91 -0.02 2.86 16 10 C 0.02 1.09 5.27 84.65 0.45 1.53 16 11 N -0.93 -53.34 11.44 21.45 0.25 -53.09 16 12 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 16 N -0.69 -33.62 4.07 -508.98 -2.07 -35.70 16 17 C 0.08 3.26 5.54 85.39 0.47 3.73 16 18 C -0.06 -2.14 0.72 -52.66 -0.04 -2.17 16 19 C -0.14 -5.10 7.07 71.98 0.51 -4.59 16 20 C -0.13 -3.28 7.97 71.98 0.57 -2.71 16 21 C 0.08 2.62 3.27 86.31 0.28 2.91 16 22 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.04 1.36 6.39 -2.39 -0.02 1.34 16 25 H 0.03 1.01 8.11 -2.39 -0.02 0.99 16 26 H 0.06 1.35 6.86 -2.39 -0.02 1.33 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.06 2.44 4.29 -2.38 -0.01 2.43 16 30 H 0.05 2.17 5.69 -2.39 -0.01 2.15 16 31 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.35 19.03 6.35 -89.69 -0.57 18.46 16 33 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 34 H 0.06 2.16 7.66 -2.39 -0.02 2.14 16 35 H 0.04 1.22 7.55 -2.39 -0.02 1.20 16 36 H 0.04 1.50 7.91 -2.39 -0.02 1.49 16 37 H 0.08 3.62 3.98 -2.39 -0.01 3.61 16 38 H 0.06 1.40 8.11 -2.39 -0.02 1.39 16 39 H 0.06 1.46 8.00 -2.38 -0.02 1.44 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.03 0.99 7.42 -2.39 -0.02 0.97 16 42 H 0.07 2.17 6.89 -2.39 -0.02 2.16 16 Total: -1.00 -59.92 302.62 1.58 -58.34 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.41 Total: 26.83 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 4.31 Total: -18.23 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -5.16 Total: -113.06 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.92 1.58 -58.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.160 kcal (2) G-P(sol) polarization free energy of solvation -59.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds