Wall clock time and date at job start Mon Mar 30 2020 03:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46762 * 2 1 4 4 N 1.46903 * 109.46934 * 173.94842 * 3 2 1 5 5 C 1.40087 * 110.99967 * 65.75792 * 4 3 2 6 6 C 1.54510 * 111.51652 * 188.14476 * 5 4 3 7 7 C 1.52996 * 109.56187 * 43.81224 * 6 5 4 8 8 C 1.53003 * 109.56166 * 164.14235 * 6 5 4 9 9 C 1.50745 * 108.93427 * 283.97568 * 6 5 4 10 10 N 1.48072 * 112.93586 * 92.65697 * 9 6 5 11 11 C 1.47750 * 113.78418 * 318.28712 * 10 9 6 12 12 C 1.47691 * 111.00414 * 194.38826 * 4 3 2 13 13 H 1.09001 * 109.73698 * 271.71411 * 12 4 3 14 14 C 1.50709 * 109.73313 * 32.35511 * 12 4 3 15 15 H 1.07997 * 119.99581 * 54.24879 * 14 12 4 16 16 C 1.37871 * 120.00262 * 234.53060 * 14 12 4 17 17 N 1.31514 * 120.00395 * 181.75607 * 16 14 12 18 18 Si 1.86807 * 119.99877 * 1.75248 * 16 14 12 19 19 H 1.48501 * 109.46962 * 91.11922 * 18 16 14 20 20 H 1.48505 * 109.47043 * 211.12018 * 18 16 14 21 21 H 1.48496 * 109.46988 * 331.12122 * 18 16 14 22 22 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47099 * 299.99631 * 1 2 3 24 24 H 1.09003 * 109.47140 * 59.99825 * 1 2 3 25 25 H 1.09002 * 109.47584 * 240.00393 * 2 1 3 26 26 H 1.08993 * 109.47621 * 120.00047 * 2 1 3 27 27 H 1.09000 * 109.47169 * 53.95727 * 3 2 1 28 28 H 1.08997 * 109.47624 * 293.94983 * 3 2 1 29 29 H 1.09006 * 109.06543 * 308.66291 * 5 4 3 30 30 H 1.08997 * 109.07240 * 67.68401 * 5 4 3 31 31 H 1.08996 * 109.46990 * 99.18814 * 7 6 5 32 32 H 1.08996 * 109.47414 * 219.18796 * 7 6 5 33 33 H 1.09004 * 109.47185 * 339.18575 * 7 6 5 34 34 H 1.08999 * 109.46999 * 59.99645 * 8 6 5 35 35 H 1.08996 * 109.46800 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.46675 * 299.99410 * 8 6 5 37 37 H 1.09002 * 108.78973 * 213.54642 * 9 6 5 38 38 H 1.08998 * 108.79297 * 331.87757 * 9 6 5 39 39 H 1.00896 * 110.99982 * 192.21407 * 10 9 6 40 40 H 1.09004 * 108.98946 * 198.24536 * 11 10 9 41 41 H 1.08993 * 108.99657 * 79.49756 * 11 10 9 42 42 H 0.97000 * 120.00337 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5017 1.4452 0.1460 5 6 4.1188 0.8675 -0.9711 6 6 5.6358 0.6791 -0.7463 7 6 5.8801 0.1191 0.6564 8 6 6.1921 -0.2901 -1.7913 9 6 6.3201 2.0154 -0.8824 10 7 6.4679 2.7224 0.4102 11 6 5.2745 2.6353 1.2769 12 6 3.9967 2.7928 0.4924 13 1 4.1904 3.3592 -0.4185 14 6 2.9707 3.5120 1.3300 15 1 2.5938 3.0545 2.2327 16 6 2.5090 4.7514 0.9407 17 7 1.6396 5.3943 1.6894 18 14 3.1184 5.5177 -0.6502 19 1 2.2139 5.1328 -1.7633 20 1 3.1336 6.9964 -0.5134 21 1 4.4922 5.0332 -0.9386 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.5909 1.9866 0.8309 28 1 1.7677 1.9242 -0.9391 29 1 3.6644 -0.1039 -1.1663 30 1 3.9653 1.5126 -1.8361 31 1 6.0368 -0.9578 0.5954 32 1 6.7632 0.5909 1.0873 33 1 5.0144 0.3253 1.2859 34 1 6.0209 0.1140 -2.7891 35 1 7.2623 -0.4215 -1.6316 36 1 5.6895 -1.2528 -1.6979 37 1 7.3094 1.8609 -1.3132 38 1 5.7373 2.6411 -1.5583 39 1 6.7422 3.6828 0.2677 40 1 5.3264 3.4199 2.0318 41 1 5.2677 1.6658 1.7749 42 1 1.3151 6.2664 1.4156 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220426707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:00 Heat of formation + Delta-G solvation = 20.963651 kcal Electronic energy + Delta-G solvation = -19406.634145 eV Core-core repulsion = 16808.155034 eV Total energy + Delta-G solvation = -2598.479111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75222 -35.69699 -34.00731 -32.47308 -31.96377 -28.72270 -27.27544 -26.01111 -25.56635 -23.60573 -22.75461 -20.30924 -19.15180 -18.11056 -17.23458 -15.73879 -15.14727 -14.76575 -14.58472 -14.17008 -14.00105 -13.72344 -13.04813 -12.72745 -12.59018 -12.17012 -12.07169 -11.93215 -11.53899 -11.34193 -11.19001 -11.12923 -11.03761 -10.72618 -10.52564 -10.37735 -10.16612 -9.97580 -9.80157 -9.73440 -9.27800 -9.09496 -8.71496 -7.72016 -7.03941 -6.20718 -4.18129 3.14957 3.23394 3.25637 4.27380 4.71988 4.91181 5.10326 5.21548 5.23407 5.50402 5.58564 5.72287 5.82042 5.89723 5.92174 5.98496 6.07574 6.15297 6.20581 6.23288 6.27535 6.34278 6.38801 6.45300 6.55100 6.58346 6.61779 6.65512 6.78513 6.83293 6.91497 7.15763 7.31763 7.38343 7.42361 7.76488 8.02476 8.23071 8.25465 8.72939 8.87126 9.42246 10.91500 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.012378 C = 0.008711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.591088 B = 2261.586644 C = 3213.582437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.068 3.932 4 N -0.550 5.550 5 C 0.082 3.918 6 C -0.065 4.065 7 C -0.143 4.143 8 C -0.132 4.132 9 C 0.073 3.927 10 N -0.702 5.702 11 C 0.048 3.952 12 C 0.155 3.845 13 H 0.016 0.984 14 C -0.502 4.502 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.892 5.892 18 Si 0.872 3.128 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.268 1.268 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.011 0.989 29 H 0.062 0.938 30 H -0.001 1.001 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.018 0.982 39 H 0.331 0.669 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 -8.941 -5.484 11.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.059 4.059 4 N -0.274 5.274 5 C -0.049 4.049 6 C -0.066 4.066 7 C -0.200 4.200 8 C -0.190 4.190 9 C -0.056 4.056 10 N -0.331 5.331 11 C -0.080 4.080 12 C 0.049 3.951 13 H 0.034 0.966 14 C -0.541 4.541 15 H 0.101 0.899 16 C -0.128 4.128 17 N -0.529 5.529 18 Si 0.700 3.300 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.193 1.193 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.017 0.983 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.147 0.853 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.278 -9.561 -4.811 11.934 hybrid contribution -0.554 1.752 -2.292 2.937 sum 4.723 -7.810 -7.102 11.565 Atomic orbital electron populations 1.21706 0.96500 1.00455 1.01872 1.21620 0.94806 0.98402 1.01107 1.22039 0.87900 0.94452 1.01527 1.59227 1.04835 1.25950 1.37429 1.21076 0.93637 0.98471 0.91671 1.20462 0.94742 0.94413 0.96946 1.22267 1.04071 0.97710 0.95922 1.21834 1.00451 0.98647 0.98056 1.21662 0.98609 0.94338 0.90960 1.60592 1.37749 1.18551 1.16211 1.22632 0.86544 1.03485 0.95335 1.20185 0.94791 0.84964 0.95158 0.96622 1.20840 1.22163 1.01584 1.09553 0.89905 1.25033 0.94514 0.96942 0.96320 1.69875 1.30803 1.14530 1.37706 0.86940 0.79629 0.78627 0.84767 1.20554 1.21254 1.19339 0.93589 0.92401 0.93385 0.93589 0.91693 0.87299 0.97088 0.92018 0.98294 0.95170 0.91442 0.88885 0.93407 0.92696 0.92692 0.92262 0.96401 0.85298 0.91452 0.88972 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.83 16 2 C -0.12 -2.01 5.66 -26.73 -0.15 -2.17 16 3 C 0.07 1.39 4.54 -3.82 -0.02 1.37 16 4 N -0.55 -11.22 2.80 -233.07 -0.65 -11.87 16 5 C 0.08 1.49 3.84 -6.55 -0.03 1.46 16 6 C -0.06 -1.05 0.77 -154.85 -0.12 -1.17 16 7 C -0.14 -2.33 7.38 37.16 0.27 -2.05 16 8 C -0.13 -1.74 7.97 37.16 0.30 -1.44 16 9 C 0.07 1.27 5.27 -4.31 -0.02 1.25 16 10 N -0.70 -12.84 5.87 -114.71 -0.67 -13.51 16 11 C 0.05 1.00 5.43 -4.47 -0.02 0.97 16 12 C 0.16 3.52 1.80 -69.54 -0.13 3.40 16 13 H 0.02 0.39 3.08 -51.93 -0.16 0.23 16 14 C -0.50 -13.18 6.24 -34.44 -0.21 -13.40 16 15 H 0.08 2.39 7.80 -52.49 -0.41 1.98 16 16 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 18 Si 0.87 21.24 27.37 -169.99 -4.65 16.59 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.34 6.21 56.52 0.35 -5.99 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.72 6.64 -51.93 -0.35 0.37 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.11 2.56 5.79 -51.93 -0.30 2.25 16 28 H 0.01 0.24 8.11 -51.93 -0.42 -0.18 16 29 H 0.06 1.04 5.94 -51.93 -0.31 0.73 16 30 H 0.00 -0.02 7.59 -51.93 -0.39 -0.41 16 31 H 0.03 0.44 7.72 -51.93 -0.40 0.03 16 32 H 0.07 1.13 6.57 -51.93 -0.34 0.79 16 33 H 0.09 1.70 4.64 -51.93 -0.24 1.46 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.92 7.69 -51.93 -0.40 0.52 16 38 H 0.02 0.34 6.51 -51.93 -0.34 0.00 16 39 H 0.33 5.91 8.91 -39.29 -0.35 5.56 16 40 H 0.07 1.47 7.71 -51.93 -0.40 1.07 16 41 H 0.09 1.87 4.19 -51.93 -0.22 1.65 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 298.87 15.07 4.50 4.50 Total: -1.00 -27.14 298.87 -7.73 -34.87 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.17 Total: 6.28 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 0.14 Total: -11.65 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.55 Total: -50.59 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.65 Total: 16.59 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.14 -7.73 -34.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.838 kcal (2) G-P(sol) polarization free energy of solvation -27.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds