Wall clock time and date at job start Mon Mar 30 2020 03:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46762 * 2 1 4 4 N 1.46903 * 109.46934 * 173.94842 * 3 2 1 5 5 C 1.40087 * 110.99967 * 65.75792 * 4 3 2 6 6 C 1.54510 * 111.51652 * 188.14476 * 5 4 3 7 7 C 1.52996 * 109.56187 * 43.81224 * 6 5 4 8 8 C 1.53003 * 109.56166 * 164.14235 * 6 5 4 9 9 C 1.50745 * 108.93427 * 283.97568 * 6 5 4 10 10 N 1.48072 * 112.93586 * 92.65697 * 9 6 5 11 11 C 1.47750 * 113.78418 * 318.28712 * 10 9 6 12 12 C 1.47691 * 111.00414 * 194.38826 * 4 3 2 13 13 H 1.09001 * 109.73698 * 271.71411 * 12 4 3 14 14 C 1.50709 * 109.73313 * 32.35511 * 12 4 3 15 15 H 1.07997 * 119.99581 * 54.24879 * 14 12 4 16 16 C 1.37871 * 120.00262 * 234.53060 * 14 12 4 17 17 N 1.31514 * 120.00395 * 181.75607 * 16 14 12 18 18 Si 1.86807 * 119.99877 * 1.75248 * 16 14 12 19 19 H 1.48501 * 109.46962 * 91.11922 * 18 16 14 20 20 H 1.48505 * 109.47043 * 211.12018 * 18 16 14 21 21 H 1.48496 * 109.46988 * 331.12122 * 18 16 14 22 22 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47099 * 299.99631 * 1 2 3 24 24 H 1.09003 * 109.47140 * 59.99825 * 1 2 3 25 25 H 1.09002 * 109.47584 * 240.00393 * 2 1 3 26 26 H 1.08993 * 109.47621 * 120.00047 * 2 1 3 27 27 H 1.09000 * 109.47169 * 53.95727 * 3 2 1 28 28 H 1.08997 * 109.47624 * 293.94983 * 3 2 1 29 29 H 1.09006 * 109.06543 * 308.66291 * 5 4 3 30 30 H 1.08997 * 109.07240 * 67.68401 * 5 4 3 31 31 H 1.08996 * 109.46990 * 99.18814 * 7 6 5 32 32 H 1.08996 * 109.47414 * 219.18796 * 7 6 5 33 33 H 1.09004 * 109.47185 * 339.18575 * 7 6 5 34 34 H 1.08999 * 109.46999 * 59.99645 * 8 6 5 35 35 H 1.08996 * 109.46800 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.46675 * 299.99410 * 8 6 5 37 37 H 1.09002 * 108.78973 * 213.54642 * 9 6 5 38 38 H 1.08998 * 108.79297 * 331.87757 * 9 6 5 39 39 H 1.00896 * 110.99982 * 192.21407 * 10 9 6 40 40 H 1.09004 * 108.98946 * 198.24536 * 11 10 9 41 41 H 1.08993 * 108.99657 * 79.49756 * 11 10 9 42 42 H 0.97000 * 120.00337 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5017 1.4452 0.1460 5 6 4.1188 0.8675 -0.9711 6 6 5.6358 0.6791 -0.7463 7 6 5.8801 0.1191 0.6564 8 6 6.1921 -0.2901 -1.7913 9 6 6.3201 2.0154 -0.8824 10 7 6.4679 2.7224 0.4102 11 6 5.2745 2.6353 1.2769 12 6 3.9967 2.7928 0.4924 13 1 4.1904 3.3592 -0.4185 14 6 2.9707 3.5120 1.3300 15 1 2.5938 3.0545 2.2327 16 6 2.5090 4.7514 0.9407 17 7 1.6396 5.3943 1.6894 18 14 3.1184 5.5177 -0.6502 19 1 2.2139 5.1328 -1.7633 20 1 3.1336 6.9964 -0.5134 21 1 4.4922 5.0332 -0.9386 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.5909 1.9866 0.8309 28 1 1.7677 1.9242 -0.9391 29 1 3.6644 -0.1039 -1.1663 30 1 3.9653 1.5126 -1.8361 31 1 6.0368 -0.9578 0.5954 32 1 6.7632 0.5909 1.0873 33 1 5.0144 0.3253 1.2859 34 1 6.0209 0.1140 -2.7891 35 1 7.2623 -0.4215 -1.6316 36 1 5.6895 -1.2528 -1.6979 37 1 7.3094 1.8609 -1.3132 38 1 5.7373 2.6411 -1.5583 39 1 6.7422 3.6828 0.2677 40 1 5.3264 3.4199 2.0318 41 1 5.2677 1.6658 1.7749 42 1 1.3151 6.2664 1.4156 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220426707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:59 Heat of formation + Delta-G solvation = 3.120782 kcal Electronic energy + Delta-G solvation = -19407.407870 eV Core-core repulsion = 16808.155034 eV Total energy + Delta-G solvation = -2599.252836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29115 -37.20765 -35.67573 -34.20654 -33.58233 -30.37780 -28.69646 -27.49074 -26.97028 -25.32929 -24.26186 -21.80796 -20.90609 -19.51486 -19.25740 -17.32889 -16.69336 -16.39365 -16.22649 -15.76842 -15.63081 -15.11159 -14.84443 -14.22875 -13.96432 -13.82210 -13.43338 -13.22511 -13.02276 -13.00540 -12.79456 -12.57472 -12.48566 -12.22137 -12.04039 -11.93879 -11.86362 -11.58143 -11.40844 -11.15963 -10.95465 -10.82873 -10.78725 -9.30598 -8.72050 -8.35958 -6.34766 1.17470 1.21298 1.28390 2.20941 2.90688 3.34727 3.41558 3.78175 3.93935 4.14092 4.24925 4.41486 4.48636 4.49914 4.56676 4.64274 4.67073 4.75920 4.80149 4.81320 4.86446 4.99889 5.04844 5.10949 5.13964 5.17722 5.28456 5.30121 5.36642 5.43172 5.47785 5.49594 5.59887 5.66770 5.84879 6.10922 6.22818 6.45684 6.54519 6.71948 6.99978 7.27638 8.80004 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.012378 C = 0.008711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.591088 B = 2261.586644 C = 3213.582437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C 0.071 3.929 4 N -0.546 5.546 5 C 0.078 3.922 6 C -0.064 4.064 7 C -0.135 4.135 8 C -0.125 4.125 9 C 0.071 3.929 10 N -0.693 5.693 11 C 0.057 3.943 12 C 0.161 3.839 13 H 0.004 0.996 14 C -0.490 4.490 15 H 0.045 0.955 16 C 0.024 3.976 17 N -0.937 5.937 18 Si 0.928 3.072 19 H -0.281 1.281 20 H -0.282 1.282 21 H -0.255 1.255 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.069 0.931 28 H -0.007 1.007 29 H 0.082 0.918 30 H -0.016 1.016 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.086 0.914 38 H -0.002 1.002 39 H 0.334 0.666 40 H 0.047 0.953 41 H 0.099 0.901 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 -11.003 -7.288 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.056 4.056 4 N -0.270 5.270 5 C -0.052 4.052 6 C -0.065 4.065 7 C -0.193 4.193 8 C -0.183 4.183 9 C -0.058 4.058 10 N -0.322 5.322 11 C -0.072 4.072 12 C 0.053 3.947 13 H 0.022 0.978 14 C -0.530 4.530 15 H 0.063 0.937 16 C -0.175 4.175 17 N -0.577 5.577 18 Si 0.755 3.245 19 H -0.208 1.208 20 H -0.208 1.208 21 H -0.180 1.180 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.012 0.988 29 H 0.100 0.900 30 H 0.002 0.998 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.016 0.984 39 H 0.151 0.849 40 H 0.066 0.934 41 H 0.117 0.883 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.932 -11.641 -6.624 15.081 hybrid contribution -1.084 2.327 -1.687 3.071 sum 5.848 -9.314 -8.310 13.785 Atomic orbital electron populations 1.21690 0.95192 1.02171 1.01209 1.21518 0.95904 0.95343 1.02017 1.21961 0.88068 0.96800 0.98809 1.59232 1.04784 1.24222 1.38756 1.21233 0.95379 0.98671 0.89895 1.20537 0.93032 0.94755 0.98175 1.22127 1.02681 0.99137 0.95306 1.21789 1.01372 0.98162 0.97013 1.21825 0.99924 0.94367 0.89695 1.60621 1.35781 1.19023 1.16805 1.22410 0.86497 1.03115 0.95150 1.20070 0.94675 0.85778 0.94140 0.97849 1.20933 1.22130 1.01461 1.08430 0.93718 1.25682 0.94928 0.97636 0.99211 1.69999 1.32802 1.15174 1.39714 0.86033 0.79590 0.77906 0.81012 1.20751 1.20825 1.18006 0.90622 0.93792 0.93417 0.91679 0.91513 0.91217 0.98825 0.90005 0.99802 0.92950 0.91881 0.91230 0.92824 0.91116 0.91368 0.89595 0.98383 0.84941 0.93395 0.88328 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.91 71.98 0.71 -3.40 16 2 C -0.11 -3.49 5.66 30.59 0.17 -3.32 16 3 C 0.07 2.95 4.54 86.30 0.39 3.34 16 4 N -0.55 -22.08 2.80 -891.30 -2.50 -24.58 16 5 C 0.08 2.68 3.84 88.05 0.34 3.02 16 6 C -0.06 -1.89 0.77 -52.40 -0.04 -1.93 16 7 C -0.14 -4.02 7.38 71.98 0.53 -3.49 16 8 C -0.13 -2.74 7.97 71.98 0.57 -2.17 16 9 C 0.07 2.25 5.27 85.35 0.45 2.70 16 10 N -0.69 -24.19 5.87 -516.84 -3.04 -27.23 16 11 C 0.06 2.35 5.43 85.42 0.46 2.81 16 12 C 0.16 7.35 1.80 43.30 0.08 7.43 16 13 H 0.00 0.19 3.08 -2.39 -0.01 0.18 16 14 C -0.49 -26.81 6.24 25.60 0.16 -26.65 16 15 H 0.04 2.74 7.80 -2.91 -0.02 2.72 16 16 C 0.02 1.37 5.47 84.65 0.46 1.83 16 17 N -0.94 -56.84 13.96 21.44 0.30 -56.54 16 18 Si 0.93 44.64 27.37 68.60 1.88 46.51 16 19 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.26 -11.65 6.21 99.48 0.62 -11.03 16 22 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.84 6.64 -2.39 -0.02 1.82 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.07 3.44 5.79 -2.39 -0.01 3.42 16 28 H -0.01 -0.29 8.11 -2.39 -0.02 -0.31 16 29 H 0.08 2.50 5.94 -2.38 -0.01 2.48 16 30 H -0.02 -0.61 7.59 -2.39 -0.02 -0.62 16 31 H 0.05 1.32 7.72 -2.39 -0.02 1.30 16 32 H 0.06 1.94 6.57 -2.39 -0.02 1.92 16 33 H 0.07 2.42 4.64 -2.39 -0.01 2.41 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 37 H 0.09 2.32 7.69 -2.39 -0.02 2.30 16 38 H 0.00 -0.08 6.51 -2.39 -0.02 -0.09 16 39 H 0.33 11.39 8.91 -89.70 -0.80 10.59 16 40 H 0.05 2.13 7.71 -2.38 -0.02 2.11 16 41 H 0.10 3.96 4.19 -2.39 -0.01 3.95 16 42 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -60.34 298.87 1.04 -59.29 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.11 Total: 22.36 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 4.30 Total: -19.82 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -5.24 Total: -108.35 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.51 kcal Total: -60.34 1.04 -59.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.415 kcal (2) G-P(sol) polarization free energy of solvation -60.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds