Wall clock time and date at job start Mon Mar 30 2020 03:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46873 * 2 1 4 4 N 1.46901 * 109.46927 * 180.02562 * 3 2 1 5 5 C 1.47911 * 111.00338 * 61.95441 * 4 3 2 6 6 C 1.50796 * 108.49598 * 153.75933 * 5 4 3 7 7 C 1.53003 * 108.95554 * 213.23377 * 6 5 4 8 8 C 1.53002 * 108.95756 * 331.88609 * 6 5 4 9 9 C 1.53700 * 112.09446 * 92.56392 * 6 5 4 10 10 N 1.48066 * 112.46566 * 318.55368 * 9 6 5 11 11 C 1.44581 * 113.86189 * 318.31559 * 10 9 6 12 12 C 1.40014 * 111.00158 * 293.97685 * 4 3 2 13 13 H 1.08990 * 108.96114 * 67.51640 * 12 4 3 14 14 C 1.50698 * 108.95980 * 308.76345 * 12 4 3 15 15 H 1.08006 * 119.99957 * 334.08168 * 14 12 4 16 16 C 1.37872 * 120.00042 * 154.07861 * 14 12 4 17 17 N 1.31518 * 119.99758 * 356.22685 * 16 14 12 18 18 Si 1.86797 * 120.00414 * 175.95313 * 16 14 12 19 19 H 1.48501 * 109.47071 * 59.99688 * 18 16 14 20 20 H 1.48502 * 109.47682 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46916 * 299.99938 * 18 16 14 22 22 H 1.08996 * 109.46989 * 59.99977 * 1 2 3 23 23 H 1.09005 * 109.47084 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46870 * 299.99754 * 1 2 3 25 25 H 1.09003 * 109.46904 * 240.00223 * 2 1 3 26 26 H 1.09003 * 109.47446 * 120.00524 * 2 1 3 27 27 H 1.08993 * 109.47172 * 60.00431 * 3 2 1 28 28 H 1.08996 * 109.47332 * 299.99814 * 3 2 1 29 29 H 1.09000 * 109.63146 * 273.46594 * 5 4 3 30 30 H 1.09000 * 109.62907 * 34.05841 * 5 4 3 31 31 H 1.09002 * 109.47125 * 60.00262 * 7 6 5 32 32 H 1.09006 * 109.47114 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47004 * 300.00051 * 7 6 5 34 34 H 1.09000 * 109.47111 * 37.44053 * 8 6 5 35 35 H 1.08997 * 109.46810 * 157.43654 * 8 6 5 36 36 H 1.08999 * 109.46688 * 277.43541 * 8 6 5 37 37 H 1.08994 * 108.88788 * 79.32607 * 9 6 5 38 38 H 1.09000 * 108.88052 * 197.88589 * 9 6 5 39 39 H 1.00906 * 111.00160 * 192.19883 * 10 9 6 40 40 H 1.08995 * 109.57138 * 334.41652 * 11 10 9 41 41 H 1.09000 * 109.57521 * 214.03643 * 11 10 9 42 42 H 0.96993 * 120.00489 * 5.71753 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0386 0.7935 -1.2196 6 6 5.4074 1.3577 -1.5058 7 6 5.6205 1.4009 -3.0203 8 6 5.4826 2.7831 -0.9547 9 6 6.5245 0.5163 -0.8683 10 7 6.1833 0.0672 0.5008 11 6 5.5399 1.0814 1.3057 12 6 4.0113 0.9112 1.1934 13 1 3.7702 -0.1508 1.2375 14 6 3.3541 1.6107 2.3553 15 1 2.9711 2.6134 2.2354 16 6 3.2418 0.9706 3.5713 17 7 3.6407 -0.2763 3.6973 18 14 2.5303 1.8768 5.0416 19 1 1.1430 2.3078 4.7336 20 1 2.5186 0.9745 6.2210 21 1 3.3644 3.0689 5.3394 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 4.1120 -0.2822 -1.0594 30 1 3.3754 0.9970 -2.0604 31 1 4.8590 2.0336 -3.4765 32 1 6.6085 1.8074 -3.2368 33 1 5.5460 0.3922 -3.4266 34 1 4.9369 2.8377 -0.0128 35 1 6.5252 3.0531 -0.7868 36 1 5.0393 3.4737 -1.6721 37 1 6.7063 -0.3591 -1.4916 38 1 7.4352 1.1136 -0.8254 39 1 6.9938 -0.3071 0.9711 40 1 5.8248 2.0694 0.9443 41 1 5.8443 0.9693 2.3463 42 1 4.0892 -0.7190 2.9600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220426779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:03 Heat of formation + Delta-G solvation = 15.134920 kcal Electronic energy + Delta-G solvation = -19462.292990 eV Core-core repulsion = 16863.561126 eV Total energy + Delta-G solvation = -2598.731864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.59419 -35.93246 -34.00553 -32.45989 -31.59072 -28.01498 -26.78887 -26.14909 -25.15678 -23.50370 -22.64949 -20.90677 -19.26640 -18.03903 -16.51366 -15.82745 -15.09651 -14.71741 -14.07127 -13.97432 -13.79004 -13.68249 -12.96569 -12.73641 -12.60069 -12.27969 -11.77946 -11.63387 -11.43678 -11.32509 -11.10381 -10.88308 -10.72064 -10.53588 -10.36893 -10.25190 -10.17401 -10.05578 -9.90953 -9.68649 -9.45955 -8.48083 -8.32297 -7.49389 -6.83298 -6.23626 -3.98437 3.45820 3.46924 3.65591 4.54514 4.86976 4.98802 5.16074 5.43693 5.44568 5.57904 5.68976 5.71905 5.83345 5.91312 6.00301 6.03987 6.13892 6.15339 6.21821 6.24856 6.33410 6.40452 6.47460 6.52830 6.56575 6.65254 6.69739 6.75462 6.77305 6.88019 7.12636 7.25579 7.35230 7.54524 7.93201 8.00807 8.15787 8.34871 8.60941 8.82795 9.04927 9.75118 11.11163 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022009 B = 0.010111 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.891172 B = 2768.460691 C = 3467.296479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.154 4.154 3 C 0.076 3.924 4 N -0.533 5.533 5 C 0.077 3.923 6 C -0.062 4.062 7 C -0.136 4.136 8 C -0.152 4.152 9 C 0.079 3.921 10 N -0.705 5.705 11 C 0.057 3.943 12 C 0.213 3.787 13 H 0.008 0.992 14 C -0.587 4.587 15 H 0.053 0.947 16 C 0.022 3.978 17 N -0.912 5.912 18 Si 1.062 2.938 19 H -0.289 1.289 20 H -0.285 1.285 21 H -0.289 1.289 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.115 0.885 35 H 0.028 0.972 36 H 0.039 0.961 37 H 0.056 0.944 38 H 0.017 0.983 39 H 0.329 0.671 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 2.431 -9.420 9.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.193 4.193 3 C -0.052 4.052 4 N -0.254 5.254 5 C -0.051 4.051 6 C -0.063 4.063 7 C -0.194 4.194 8 C -0.209 4.209 9 C -0.049 4.049 10 N -0.336 5.336 11 C -0.072 4.072 12 C 0.104 3.896 13 H 0.025 0.975 14 C -0.626 4.626 15 H 0.071 0.929 16 C -0.183 4.183 17 N -0.548 5.548 18 Si 0.891 3.109 19 H -0.216 1.216 20 H -0.211 1.211 21 H -0.216 1.216 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.146 0.854 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.581 2.453 -8.017 8.405 hybrid contribution 1.140 -0.168 -1.421 1.830 sum 1.721 2.285 -9.438 9.863 Atomic orbital electron populations 1.21644 0.96791 1.00471 1.01037 1.22084 0.95254 1.00318 1.01613 1.22035 0.87517 0.94425 1.01224 1.59459 1.06290 1.57208 1.02474 1.21633 0.93772 0.96659 0.93000 1.20327 0.95419 0.96564 0.93998 1.21919 1.01025 1.01039 0.95409 1.22409 0.99841 0.93914 1.04718 1.22243 0.95032 0.96936 0.90733 1.59284 1.31963 1.39486 1.02849 1.22541 0.97222 0.92526 0.94949 1.18268 0.90033 0.94635 0.86693 0.97487 1.21948 1.41649 1.02962 0.96070 0.92874 1.25670 0.96445 0.95931 1.00264 1.70733 1.37041 1.10526 1.36504 0.83641 0.76105 0.75075 0.76050 1.21606 1.21058 1.21594 0.93758 0.93855 0.92676 0.93850 0.90878 0.89103 0.93922 0.94349 0.92788 0.92699 0.93260 0.93203 0.86652 0.95308 0.94232 0.92537 0.96437 0.85384 0.93236 0.92373 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.15 -3.01 5.40 -26.73 -0.14 -3.15 16 3 C 0.08 1.53 4.85 -3.83 -0.02 1.51 16 4 N -0.53 -11.19 2.30 -232.88 -0.53 -11.72 16 5 C 0.08 1.44 3.48 -4.37 -0.02 1.42 16 6 C -0.06 -1.03 0.72 -155.25 -0.11 -1.15 16 7 C -0.14 -1.83 7.94 37.16 0.30 -1.54 16 8 C -0.15 -2.65 7.08 37.16 0.26 -2.38 16 9 C 0.08 1.34 5.49 -2.82 -0.02 1.32 16 10 N -0.70 -13.76 6.12 -113.48 -0.69 -14.45 16 11 C 0.06 1.27 5.41 -4.43 -0.02 1.24 16 12 C 0.21 5.09 0.74 -71.79 -0.05 5.04 16 13 H 0.01 0.21 5.16 -51.93 -0.27 -0.06 16 14 C -0.59 -15.48 6.59 -34.44 -0.23 -15.70 16 15 H 0.05 1.43 7.21 -52.48 -0.38 1.05 16 16 C 0.02 0.60 5.43 -17.82 -0.10 0.51 16 17 N -0.91 -26.64 13.61 55.43 0.75 -25.89 16 18 Si 1.06 24.69 29.91 -169.99 -5.08 19.61 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.81 7.09 -51.93 -0.37 0.44 16 26 H 0.07 1.72 6.70 -51.93 -0.35 1.37 16 27 H 0.09 2.03 6.10 -51.93 -0.32 1.72 16 28 H 0.04 0.77 8.02 -51.93 -0.42 0.36 16 29 H 0.04 0.79 7.30 -51.93 -0.38 0.41 16 30 H 0.05 0.93 7.35 -51.93 -0.38 0.55 16 31 H 0.05 0.71 8.01 -51.93 -0.42 0.29 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.12 2.38 4.02 -51.93 -0.21 2.17 16 35 H 0.03 0.47 7.51 -51.93 -0.39 0.08 16 36 H 0.04 0.64 7.85 -51.93 -0.41 0.23 16 37 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 38 H 0.02 0.28 7.61 -51.93 -0.40 -0.11 16 39 H 0.33 5.90 8.89 -39.29 -0.35 5.55 16 40 H 0.05 1.08 4.30 -51.93 -0.22 0.86 16 41 H 0.06 1.43 7.97 -51.93 -0.41 1.02 16 42 H 0.27 8.14 6.64 -40.82 -0.27 7.87 16 LS Contribution 302.72 15.07 4.56 4.56 Total: -1.00 -27.58 302.72 -8.03 -35.61 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.25 Total: 7.13 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 0.22 Total: -14.85 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.47 Total: -52.06 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.58 -8.03 -35.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220426779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.743 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds