Wall clock time and date at job start Mon Mar 30 2020 03:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 N 1.46907 * 109.46701 * 179.97438 * 3 2 1 5 5 C 1.44252 * 110.99688 * 61.76277 * 4 3 2 6 6 C 1.54258 * 108.64054 * 219.84595 * 5 4 3 7 7 C 1.46138 * 111.89729 * 281.39486 * 6 5 4 8 8 H 1.08998 * 108.93788 * 300.16296 * 7 6 5 9 9 C 1.52998 * 108.93565 * 181.47157 * 7 6 5 10 10 N 1.48106 * 112.19970 * 60.86315 * 7 6 5 11 11 C 1.46899 * 110.99910 * 156.47662 * 10 7 6 12 12 C 1.44261 * 109.97442 * 279.71068 * 10 7 6 13 13 H 1.08994 * 108.86541 * 333.10998 * 12 10 7 14 14 C 1.50703 * 108.78136 * 214.63684 * 12 10 7 15 15 H 1.08003 * 120.00088 * 352.91765 * 14 12 10 16 16 C 1.37877 * 119.99707 * 172.91975 * 14 12 10 17 17 N 1.31516 * 119.99994 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 119.99865 * 359.97438 * 16 14 12 19 19 H 1.48506 * 109.46682 * 90.00608 * 18 16 14 20 20 H 1.48499 * 109.47106 * 210.00152 * 18 16 14 21 21 H 1.48500 * 109.47476 * 330.00467 * 18 16 14 22 22 C 1.48199 * 110.99651 * 190.00300 * 4 3 2 23 23 H 1.09000 * 109.46806 * 299.99998 * 1 2 3 24 24 H 1.09004 * 109.46660 * 59.99531 * 1 2 3 25 25 H 1.09001 * 109.47355 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46806 * 240.00002 * 2 1 3 27 27 H 1.08996 * 109.46893 * 120.00675 * 2 1 3 28 28 H 1.09002 * 109.46624 * 60.00664 * 3 2 1 29 29 H 1.08996 * 109.47778 * 300.00133 * 3 2 1 30 30 H 1.09002 * 109.60617 * 339.58683 * 5 4 3 31 31 H 1.08996 * 109.60956 * 99.92844 * 5 4 3 32 32 H 1.09001 * 108.99584 * 42.01253 * 6 5 4 33 33 H 1.09000 * 108.99738 * 160.76892 * 6 5 4 34 34 H 1.09008 * 109.47289 * 59.99823 * 9 7 6 35 35 H 1.09000 * 109.47177 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.47200 * 300.00121 * 9 7 6 37 37 H 1.08997 * 109.46805 * 191.11799 * 11 10 7 38 38 H 1.08988 * 109.47552 * 311.12684 * 11 10 7 39 39 H 1.09006 * 109.46828 * 71.12368 * 11 10 7 40 40 H 0.96996 * 120.00072 * 180.02562 * 17 16 14 41 41 H 1.08994 * 108.82444 * 70.82856 * 22 4 3 42 42 H 1.09006 * 108.73561 * 312.47272 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4423 0.0006 5 6 4.0264 0.8050 -1.1855 6 6 5.2506 -0.0477 -0.7931 7 6 6.4487 0.7694 -0.6128 8 1 6.6685 1.2859 -1.5471 9 6 7.6248 -0.1444 -0.2625 10 7 6.2848 1.7729 0.4641 11 6 7.5877 2.1808 1.0063 12 6 5.5513 2.9121 -0.0314 13 1 5.7109 2.9936 -1.1065 14 6 6.0795 4.1564 0.6348 15 1 6.8008 4.0760 1.4346 16 6 5.6419 5.3974 0.2233 17 7 6.1031 6.4833 0.8043 18 14 4.3948 5.5363 -1.1605 19 1 3.0223 5.5153 -0.5938 20 1 4.6083 6.8102 -1.8932 21 1 4.5623 4.3940 -2.0945 22 6 4.0401 2.8049 0.2410 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9562 0.8901 29 1 1.6768 1.9564 -0.8899 30 1 3.2592 0.1647 -1.6209 31 1 4.3232 1.5643 -1.9090 32 1 5.0346 -0.5710 0.1384 33 1 5.4369 -0.7826 -1.5762 34 1 7.7840 -0.8579 -1.0711 35 1 8.5239 0.4566 -0.1264 36 1 7.4044 -0.6831 0.6591 37 1 7.4368 2.7605 1.9169 38 1 8.1802 1.2947 1.2335 39 1 8.1128 2.7901 0.2706 40 1 5.7950 7.3564 0.5150 41 1 3.8494 3.0787 1.2786 42 1 3.5151 3.5050 -0.4090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220427631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:33 Heat of formation + Delta-G solvation = 30.633086 kcal Electronic energy + Delta-G solvation = -19033.729335 eV Core-core repulsion = 16435.669522 eV Total energy + Delta-G solvation = -2598.059813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.19748 -36.49598 -33.89979 -32.93793 -31.72441 -28.89155 -28.07676 -25.69815 -25.32496 -23.12401 -22.27967 -20.54388 -19.67987 -18.94460 -16.68952 -15.76808 -15.57298 -15.06299 -14.45330 -14.22548 -13.87317 -13.63552 -13.26201 -12.86365 -12.60946 -12.37638 -12.29401 -11.81039 -11.60282 -11.51011 -11.36853 -11.20751 -10.95566 -10.77698 -10.63123 -10.48911 -10.33244 -10.07764 -9.98257 -9.73922 -9.59700 -8.79075 -8.64387 -7.46695 -7.15326 -6.13712 -4.14372 3.20670 3.30417 3.30764 4.31867 4.42687 4.84545 5.10911 5.19666 5.21001 5.31795 5.45923 5.52062 5.68118 5.71382 5.86210 5.91387 5.93385 5.99483 6.08727 6.09465 6.13440 6.19601 6.27295 6.38242 6.43331 6.45270 6.46689 6.50662 6.59960 6.68129 6.72483 6.93929 7.07514 7.35220 7.43396 7.75753 7.95382 8.05831 8.31076 8.63772 8.92448 9.48035 10.97247 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.011043 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.963507 B = 2534.940601 C = 3721.593931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.057 3.943 4 N -0.542 5.542 5 C 0.063 3.937 6 C -0.099 4.099 7 C 0.079 3.921 8 H 0.027 0.973 9 C -0.152 4.152 10 N -0.507 5.507 11 C 0.039 3.961 12 C 0.186 3.814 13 H 0.000 1.000 14 C -0.529 4.529 15 H 0.099 0.901 16 C 0.076 3.924 17 N -0.894 5.894 18 Si 0.874 3.126 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.270 1.270 22 C 0.076 3.924 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.025 0.975 40 H 0.265 0.735 41 H 0.076 0.924 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -12.630 -3.563 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.071 4.071 4 N -0.266 5.266 5 C -0.066 4.066 6 C -0.138 4.138 7 C -0.030 4.030 8 H 0.045 0.955 9 C -0.210 4.210 10 N -0.231 5.231 11 C -0.108 4.108 12 C 0.076 3.924 13 H 0.018 0.982 14 C -0.567 4.567 15 H 0.116 0.884 16 C -0.126 4.126 17 N -0.532 5.532 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.195 1.195 22 C -0.051 4.051 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -5.087 -12.890 -2.806 14.139 hybrid contribution -0.663 1.293 -2.163 2.606 sum -5.750 -11.597 -4.969 13.865 Atomic orbital electron populations 1.21743 0.96235 1.01205 1.01605 1.21610 0.94721 0.97061 1.02481 1.22097 0.88726 0.96222 1.00051 1.60570 1.04985 1.23082 1.38006 1.21790 0.96722 0.96894 0.91213 1.20564 0.94357 0.97414 1.01422 1.20581 0.94832 0.94049 0.93499 0.95476 1.22137 0.98400 0.99198 1.01215 1.61502 1.17368 1.12538 1.31710 1.22444 0.89869 0.98032 1.00502 1.19450 0.89430 0.89526 0.93985 0.98213 1.21634 1.26275 0.88126 1.20668 0.88372 1.24972 0.95808 0.95931 0.95938 1.69871 1.43715 0.97878 1.41717 0.87033 0.82310 0.76975 0.83318 1.20346 1.21990 1.19530 1.23059 0.96757 0.84579 1.00675 0.92739 0.93188 0.92918 0.92135 0.91109 0.91206 0.96227 0.91959 0.95179 0.90577 0.92875 0.93418 0.92103 0.92111 0.90814 0.93514 0.95621 0.92537 0.90535 0.97028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.58 5.83 -26.73 -0.16 -1.74 16 3 C 0.06 0.93 4.88 -3.82 -0.02 0.91 16 4 N -0.54 -10.34 4.18 -234.26 -0.98 -11.32 16 5 C 0.06 1.09 5.12 -4.58 -0.02 1.07 16 6 C -0.10 -1.61 4.84 -29.33 -0.14 -1.75 16 7 C 0.08 1.42 2.24 -70.31 -0.16 1.26 16 8 H 0.03 0.53 7.38 -51.93 -0.38 0.15 16 9 C -0.15 -2.25 8.00 37.16 0.30 -1.96 16 10 N -0.51 -10.82 4.60 -232.72 -1.07 -11.89 16 11 C 0.04 0.80 7.53 60.06 0.45 1.26 16 12 C 0.19 4.47 1.35 -69.79 -0.09 4.37 16 13 H 0.00 0.01 5.18 -51.93 -0.27 -0.26 16 14 C -0.53 -14.54 7.86 -34.44 -0.27 -14.81 16 15 H 0.10 2.85 5.16 -52.48 -0.27 2.58 16 16 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 17 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 18 Si 0.87 21.95 24.43 -169.99 -4.15 17.80 16 19 H -0.28 -6.82 7.02 56.52 0.40 -6.43 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.27 -6.67 6.38 56.52 0.36 -6.31 16 22 C 0.08 1.73 4.40 -2.62 -0.01 1.72 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.77 6.13 -51.93 -0.32 0.45 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.93 5.54 -51.93 -0.29 0.64 16 31 H 0.03 0.59 6.98 -51.93 -0.36 0.22 16 32 H 0.08 1.27 8.12 -51.93 -0.42 0.85 16 33 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 34 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.06 0.90 6.05 -51.93 -0.31 0.59 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.64 6.19 -51.93 -0.32 1.31 16 38 H 0.05 0.81 5.48 -51.94 -0.28 0.52 16 39 H 0.03 0.56 7.66 -51.93 -0.40 0.16 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 1.84 7.96 -51.93 -0.41 1.43 16 42 H 0.01 0.28 4.23 -51.93 -0.22 0.06 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -29.19 298.66 -8.03 -37.22 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.25 Total: -1.37 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 0.15 Total: -8.85 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -1.28 Total: -49.30 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.15 Total: 17.80 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.19 -8.03 -37.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220427631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.854 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds