Wall clock time and date at job start Mon Mar 30 2020 03:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47525 * 2 1 4 4 N 1.46898 * 109.47514 * 180.02562 * 3 2 1 5 5 C 1.40086 * 110.99519 * 293.94997 * 4 3 2 6 6 C 1.54516 * 111.50648 * 171.85197 * 5 4 3 7 7 C 1.50750 * 108.94228 * 76.01297 * 6 5 4 8 8 H 1.09000 * 108.78794 * 28.23656 * 7 6 5 9 9 C 1.53001 * 108.78756 * 146.45430 * 7 6 5 10 10 N 1.48065 * 112.93850 * 267.34681 * 7 6 5 11 11 C 1.46896 * 110.99787 * 275.64836 * 10 7 6 12 12 C 1.47750 * 113.78739 * 41.71341 * 10 7 6 13 13 H 1.09001 * 108.99222 * 280.58133 * 12 10 7 14 14 C 1.50694 * 108.99157 * 161.75109 * 12 10 7 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 10 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 12 10 17 17 N 1.31516 * 119.99913 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99854 * 179.72538 * 16 14 12 19 19 H 1.48498 * 109.46909 * 90.00086 * 18 16 14 20 20 H 1.48497 * 109.46701 * 209.99996 * 18 16 14 21 21 H 1.48500 * 109.46867 * 330.00101 * 18 16 14 22 22 C 1.47687 * 111.00371 * 165.31463 * 4 3 2 23 23 H 1.09009 * 109.46933 * 300.00243 * 1 2 3 24 24 H 1.08993 * 109.47118 * 59.99571 * 1 2 3 25 25 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47238 * 239.99680 * 2 1 3 27 27 H 1.09001 * 109.47034 * 119.99791 * 2 1 3 28 28 H 1.09006 * 109.47185 * 59.99409 * 3 2 1 29 29 H 1.09001 * 109.47019 * 300.00441 * 3 2 1 30 30 H 1.08997 * 109.07480 * 51.33217 * 5 4 3 31 31 H 1.08995 * 109.02156 * 292.33492 * 5 4 3 32 32 H 1.09003 * 109.56215 * 316.17480 * 6 5 4 33 33 H 1.09001 * 109.65126 * 195.90229 * 6 5 4 34 34 H 1.08999 * 109.46446 * 183.41289 * 9 7 6 35 35 H 1.09005 * 109.47218 * 303.40490 * 9 7 6 36 36 H 1.08993 * 109.47100 * 63.40986 * 9 7 6 37 37 H 1.09005 * 109.46906 * 187.60044 * 11 10 7 38 38 H 1.08998 * 109.47137 * 307.59889 * 11 10 7 39 39 H 1.09001 * 109.47533 * 67.60138 * 11 10 7 40 40 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.73898 * 88.35222 * 22 4 3 42 42 H 1.08997 * 109.73183 * 327.65853 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0115 0.9113 1.1943 6 6 5.5430 0.7174 1.1283 7 6 6.2131 2.0595 1.2775 8 1 5.5683 2.7101 1.8685 9 6 7.5347 1.8701 2.0247 10 7 6.4892 2.7143 -0.0215 11 6 7.7552 2.2365 -0.5932 12 6 5.3871 2.5899 -0.9977 13 1 5.4269 1.6006 -1.4536 14 6 5.5636 3.6320 -2.0719 15 1 6.4025 4.3110 -2.0330 16 6 4.6545 3.7179 -3.1050 17 7 3.6331 2.8908 -3.1527 18 14 4.8690 5.0147 -4.4324 19 1 5.6951 4.4617 -5.5356 20 1 3.5377 5.4078 -4.9600 21 1 5.5447 6.2052 -3.8568 22 6 4.0383 2.7762 -0.3502 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.5383 -0.0524 1.3826 31 1 3.7735 1.5907 2.0128 32 1 5.8143 0.2789 0.1680 33 1 5.8641 0.0577 1.9344 34 1 7.9998 2.8416 2.1921 35 1 7.3441 1.3884 2.9838 36 1 8.2017 1.2455 1.4306 37 1 8.0014 2.8276 -1.4754 38 1 8.5494 2.3393 0.1462 39 1 7.6542 1.1884 -0.8747 40 1 2.9938 2.9510 -3.8797 41 1 4.1431 3.3787 0.5521 42 1 3.3607 3.2700 -1.0466 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220427690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:36 Heat of formation + Delta-G solvation = 16.703987 kcal Electronic energy + Delta-G solvation = -19018.905948 eV Core-core repulsion = 16420.242124 eV Total energy + Delta-G solvation = -2598.663824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13276 -36.19766 -33.60574 -32.79215 -31.13567 -28.50343 -27.90417 -25.37408 -25.02291 -23.24678 -22.16491 -20.63659 -19.70941 -18.18402 -16.33376 -15.55818 -15.09572 -14.92036 -14.40583 -14.07254 -13.83938 -13.54630 -12.91280 -12.78332 -12.31711 -12.20031 -11.87394 -11.63675 -11.47449 -11.25411 -11.17465 -10.98719 -10.80744 -10.61901 -10.52152 -10.39589 -10.17263 -10.05336 -9.79488 -9.72350 -9.57323 -8.95016 -8.31975 -7.17615 -6.96194 -5.90210 -3.97235 3.34403 3.41217 3.45566 4.45519 4.79797 5.02505 5.33907 5.37770 5.39842 5.49194 5.52126 5.73831 5.78115 5.89449 5.94836 6.02771 6.09319 6.14879 6.18959 6.22974 6.35444 6.37622 6.40386 6.41577 6.51713 6.58214 6.69909 6.71273 6.80960 6.83617 6.95587 7.11001 7.40002 7.67343 7.93017 8.17547 8.28528 8.32056 8.52761 8.75339 9.12939 9.66203 11.12101 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.011506 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.323947 B = 2432.891173 C = 4064.609251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.070 3.930 4 N -0.548 5.548 5 C 0.080 3.920 6 C -0.142 4.142 7 C 0.081 3.919 8 H 0.064 0.936 9 C -0.150 4.150 10 N -0.542 5.542 11 C 0.036 3.964 12 C 0.223 3.777 13 H 0.017 0.983 14 C -0.501 4.501 15 H 0.060 0.940 16 C 0.057 3.943 17 N -0.880 5.880 18 Si 0.891 3.109 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.085 3.915 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.013 0.987 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.003 0.997 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.008 0.992 40 H 0.258 0.742 41 H 0.008 0.992 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 -4.573 7.852 9.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.057 4.057 4 N -0.272 5.272 5 C -0.051 4.051 6 C -0.181 4.181 7 C -0.028 4.028 8 H 0.082 0.918 9 C -0.207 4.207 10 N -0.268 5.268 11 C -0.112 4.112 12 C 0.117 3.883 13 H 0.035 0.965 14 C -0.540 4.540 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.519 5.519 18 Si 0.719 3.281 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.041 4.041 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.021 0.979 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.027 0.973 40 H 0.068 0.932 41 H 0.026 0.974 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.614 -4.409 7.497 8.719 hybrid contribution -0.323 0.272 -0.293 0.514 sum -0.936 -4.137 7.203 8.359 Atomic orbital electron populations 1.21721 0.96477 1.00876 1.01501 1.21573 0.94568 0.97815 1.01939 1.21975 0.88024 0.95661 1.00086 1.58937 1.05982 1.28740 1.33513 1.20973 0.95043 0.98325 0.90713 1.22102 0.95460 0.98581 1.01997 1.21450 0.95503 0.93075 0.92744 0.91767 1.22127 0.98076 1.01432 0.99069 1.62310 1.04552 1.56058 1.03873 1.22260 0.92370 0.97242 0.99353 1.19026 0.84649 0.96830 0.87764 0.96525 1.21181 1.10068 1.16637 1.06134 0.92146 1.24948 0.95486 0.96113 0.97861 1.70020 1.13351 1.36722 1.31773 0.86614 0.77200 0.82151 0.82111 1.20930 1.21430 1.20001 1.22115 0.99519 0.85271 0.97203 0.93393 0.92630 0.93262 0.91228 0.92895 0.96894 0.90139 0.92385 0.97884 0.91049 0.92361 0.92480 0.93385 0.92536 0.91477 0.92980 0.97322 0.93244 0.97382 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.93 5.83 -26.73 -0.16 -2.08 16 3 C 0.07 1.33 4.96 -3.83 -0.02 1.31 16 4 N -0.55 -11.58 3.99 -239.70 -0.96 -12.54 16 5 C 0.08 1.47 4.84 -6.55 -0.03 1.43 16 6 C -0.14 -2.55 5.15 -27.06 -0.14 -2.69 16 7 C 0.08 1.51 2.32 -68.20 -0.16 1.35 16 8 H 0.06 1.26 6.52 -51.93 -0.34 0.92 16 9 C -0.15 -2.27 7.79 37.16 0.29 -1.98 16 10 N -0.54 -11.91 4.61 -229.37 -1.06 -12.97 16 11 C 0.04 0.72 8.41 60.06 0.51 1.23 16 12 C 0.22 5.61 1.31 -69.52 -0.09 5.52 16 13 H 0.02 0.49 7.04 -51.93 -0.37 0.12 16 14 C -0.50 -13.69 8.01 -34.44 -0.28 -13.96 16 15 H 0.06 1.68 7.50 -52.49 -0.39 1.28 16 16 C 0.06 1.56 5.03 -17.82 -0.09 1.47 16 17 N -0.88 -24.38 11.41 55.43 0.63 -23.75 16 18 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.08 2.04 4.45 -4.51 -0.02 2.02 16 23 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.05 0.80 6.37 -51.93 -0.33 0.46 16 28 H 0.01 0.23 8.11 -51.93 -0.42 -0.19 16 29 H 0.08 1.68 7.68 -51.93 -0.40 1.28 16 30 H 0.06 0.98 5.94 -51.93 -0.31 0.67 16 31 H 0.00 0.06 7.59 -51.93 -0.39 -0.33 16 32 H 0.07 1.46 6.76 -51.93 -0.35 1.11 16 33 H 0.06 0.89 7.63 -51.93 -0.40 0.49 16 34 H 0.06 0.86 8.10 -51.93 -0.42 0.43 16 35 H 0.05 0.63 7.99 -51.93 -0.42 0.21 16 36 H 0.06 0.83 6.28 -51.93 -0.33 0.51 16 37 H 0.07 1.42 7.28 -51.93 -0.38 1.04 16 38 H 0.05 0.88 5.73 -51.93 -0.30 0.59 16 39 H 0.01 0.17 7.74 -51.93 -0.40 -0.23 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.01 0.19 6.77 -51.93 -0.35 -0.16 16 42 H 0.11 2.86 5.13 -51.93 -0.27 2.60 16 LS Contribution 305.92 15.07 4.61 4.61 Total: -1.00 -27.56 305.92 -8.99 -36.54 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.38 Total: -0.12 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 0.18 Total: -7.98 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -1.38 Total: -49.25 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.56 -8.99 -36.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220427690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.248 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds