Wall clock time and date at job start Mon Mar 30 2020 03:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47525 * 2 1 4 4 N 1.46898 * 109.47514 * 180.02562 * 3 2 1 5 5 C 1.40086 * 110.99519 * 293.94997 * 4 3 2 6 6 C 1.54516 * 111.50648 * 171.85197 * 5 4 3 7 7 C 1.50750 * 108.94228 * 76.01297 * 6 5 4 8 8 H 1.09000 * 108.78794 * 28.23656 * 7 6 5 9 9 C 1.53001 * 108.78756 * 146.45430 * 7 6 5 10 10 N 1.48065 * 112.93850 * 267.34681 * 7 6 5 11 11 C 1.46896 * 110.99787 * 275.64836 * 10 7 6 12 12 C 1.47750 * 113.78739 * 41.71341 * 10 7 6 13 13 H 1.09001 * 108.99222 * 280.58133 * 12 10 7 14 14 C 1.50694 * 108.99157 * 161.75109 * 12 10 7 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 10 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 12 10 17 17 N 1.31516 * 119.99913 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99854 * 179.72538 * 16 14 12 19 19 H 1.48498 * 109.46909 * 90.00086 * 18 16 14 20 20 H 1.48497 * 109.46701 * 209.99996 * 18 16 14 21 21 H 1.48500 * 109.46867 * 330.00101 * 18 16 14 22 22 C 1.47687 * 111.00371 * 165.31463 * 4 3 2 23 23 H 1.09009 * 109.46933 * 300.00243 * 1 2 3 24 24 H 1.08993 * 109.47118 * 59.99571 * 1 2 3 25 25 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47238 * 239.99680 * 2 1 3 27 27 H 1.09001 * 109.47034 * 119.99791 * 2 1 3 28 28 H 1.09006 * 109.47185 * 59.99409 * 3 2 1 29 29 H 1.09001 * 109.47019 * 300.00441 * 3 2 1 30 30 H 1.08997 * 109.07480 * 51.33217 * 5 4 3 31 31 H 1.08995 * 109.02156 * 292.33492 * 5 4 3 32 32 H 1.09003 * 109.56215 * 316.17480 * 6 5 4 33 33 H 1.09001 * 109.65126 * 195.90229 * 6 5 4 34 34 H 1.08999 * 109.46446 * 183.41289 * 9 7 6 35 35 H 1.09005 * 109.47218 * 303.40490 * 9 7 6 36 36 H 1.08993 * 109.47100 * 63.40986 * 9 7 6 37 37 H 1.09005 * 109.46906 * 187.60044 * 11 10 7 38 38 H 1.08998 * 109.47137 * 307.59889 * 11 10 7 39 39 H 1.09001 * 109.47533 * 67.60138 * 11 10 7 40 40 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.73898 * 88.35222 * 22 4 3 42 42 H 1.08997 * 109.73183 * 327.65853 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0115 0.9113 1.1943 6 6 5.5430 0.7174 1.1283 7 6 6.2131 2.0595 1.2775 8 1 5.5683 2.7101 1.8685 9 6 7.5347 1.8701 2.0247 10 7 6.4892 2.7143 -0.0215 11 6 7.7552 2.2365 -0.5932 12 6 5.3871 2.5899 -0.9977 13 1 5.4269 1.6006 -1.4536 14 6 5.5636 3.6320 -2.0719 15 1 6.4025 4.3110 -2.0330 16 6 4.6545 3.7179 -3.1050 17 7 3.6331 2.8908 -3.1527 18 14 4.8690 5.0147 -4.4324 19 1 5.6951 4.4617 -5.5356 20 1 3.5377 5.4078 -4.9600 21 1 5.5447 6.2052 -3.8568 22 6 4.0383 2.7762 -0.3502 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.5383 -0.0524 1.3826 31 1 3.7735 1.5907 2.0128 32 1 5.8143 0.2789 0.1680 33 1 5.8641 0.0577 1.9344 34 1 7.9998 2.8416 2.1921 35 1 7.3441 1.3884 2.9838 36 1 8.2017 1.2455 1.4306 37 1 8.0014 2.8276 -1.4754 38 1 8.5494 2.3393 0.1462 39 1 7.6542 1.1884 -0.8747 40 1 2.9938 2.9510 -3.8797 41 1 4.1431 3.3787 0.5521 42 1 3.3607 3.2700 -1.0466 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220427690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:35 Heat of formation + Delta-G solvation = -1.149446 kcal Electronic energy + Delta-G solvation = -19019.680131 eV Core-core repulsion = 16420.242124 eV Total energy + Delta-G solvation = -2599.438007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77283 -37.75571 -35.51641 -34.15868 -32.95160 -30.06373 -29.47679 -27.29702 -26.46431 -24.86221 -23.77586 -22.18344 -21.29645 -19.86966 -18.32502 -17.28537 -16.77204 -16.38400 -16.18088 -15.80197 -15.31057 -15.06607 -14.52036 -14.18042 -13.90834 -13.62590 -13.41677 -13.19015 -13.00695 -12.95419 -12.65914 -12.59160 -12.45150 -12.33299 -12.03933 -12.01009 -11.84046 -11.61674 -11.50760 -11.30528 -11.23882 -10.83365 -10.39661 -8.83820 -8.73234 -7.99541 -6.14342 1.42719 1.44049 1.54198 2.45702 3.13483 3.33867 3.40693 3.93268 4.01379 4.11330 4.21079 4.35077 4.50818 4.53182 4.59110 4.60896 4.64461 4.75910 4.76897 4.81519 4.89329 4.95679 4.97454 5.04471 5.07576 5.17050 5.20686 5.21735 5.30894 5.39514 5.40464 5.47835 5.49120 5.76288 5.79708 6.35012 6.45423 6.51955 6.77992 6.93812 7.05354 7.53218 9.00734 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.011506 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.323947 B = 2432.891173 C = 4064.609251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.072 3.928 4 N -0.562 5.562 5 C 0.076 3.924 6 C -0.135 4.135 7 C 0.076 3.924 8 H 0.053 0.947 9 C -0.141 4.141 10 N -0.558 5.558 11 C 0.042 3.958 12 C 0.237 3.763 13 H -0.025 1.025 14 C -0.523 4.523 15 H 0.049 0.951 16 C 0.016 3.984 17 N -0.898 5.898 18 Si 0.952 3.048 19 H -0.280 1.280 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.100 3.900 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.008 0.992 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.003 0.997 40 H 0.258 0.742 41 H 0.001 0.999 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -5.254 9.426 10.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.056 4.056 4 N -0.286 5.286 5 C -0.054 4.054 6 C -0.174 4.174 7 C -0.032 4.032 8 H 0.072 0.928 9 C -0.198 4.198 10 N -0.283 5.283 11 C -0.106 4.106 12 C 0.130 3.870 13 H -0.007 1.007 14 C -0.562 4.562 15 H 0.068 0.932 16 C -0.184 4.184 17 N -0.537 5.537 18 Si 0.778 3.222 19 H -0.206 1.206 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.027 4.027 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.026 0.974 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.021 0.979 40 H 0.067 0.933 41 H 0.019 0.981 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.412 -5.100 9.088 10.429 hybrid contribution -0.378 0.469 -0.753 0.965 sum -0.790 -4.630 8.334 9.567 Atomic orbital electron populations 1.21678 0.94179 1.02370 1.01755 1.21494 0.96502 0.95302 1.01683 1.21982 0.86804 0.97682 0.99089 1.58895 1.07364 1.26951 1.35398 1.21095 0.95638 0.99141 0.89487 1.22065 0.95039 0.98548 1.01740 1.21556 0.97705 0.92952 0.91012 0.92848 1.22054 0.95821 1.02044 0.99915 1.62197 1.04152 1.57454 1.04509 1.22243 0.92494 0.96302 0.99600 1.18706 0.86354 0.93728 0.88168 1.00737 1.21435 1.09974 1.17207 1.07579 0.93235 1.25624 0.95190 0.97874 0.99705 1.70149 1.13677 1.37755 1.32148 0.85662 0.77209 0.79797 0.79519 1.20577 1.20888 1.19757 1.21715 0.98399 0.86661 0.95887 0.92147 0.93414 0.91130 0.93158 0.91329 0.95842 0.93100 0.90199 0.97379 0.93892 0.88716 0.92269 0.90489 0.91988 0.93514 0.89513 0.97883 0.93317 0.98057 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.11 -3.45 5.83 30.59 0.18 -3.27 16 3 C 0.07 2.73 4.96 86.30 0.43 3.16 16 4 N -0.56 -24.08 3.99 -912.29 -3.64 -27.72 16 5 C 0.08 2.69 4.84 88.05 0.43 3.12 16 6 C -0.13 -4.62 5.15 30.38 0.16 -4.46 16 7 C 0.08 2.73 2.32 43.96 0.10 2.83 16 8 H 0.05 2.04 6.52 -2.39 -0.02 2.02 16 9 C -0.14 -3.82 7.79 71.98 0.56 -3.26 16 10 N -0.56 -24.66 4.61 -879.58 -4.05 -28.72 16 11 C 0.04 1.67 8.41 127.69 1.07 2.74 16 12 C 0.24 12.35 1.31 43.28 0.06 12.41 16 13 H -0.02 -1.48 7.04 -2.39 -0.02 -1.50 16 14 C -0.52 -29.56 8.01 25.60 0.21 -29.36 16 15 H 0.05 2.84 7.50 -2.91 -0.02 2.81 16 16 C 0.02 0.88 5.03 84.66 0.43 1.31 16 17 N -0.90 -51.49 11.41 21.45 0.24 -51.24 16 18 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.10 4.99 4.45 85.43 0.38 5.37 16 23 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.07 1.89 6.37 -2.39 -0.02 1.88 16 28 H 0.02 0.83 8.11 -2.38 -0.02 0.82 16 29 H 0.05 2.21 7.68 -2.39 -0.02 2.19 16 30 H 0.08 2.49 5.94 -2.39 -0.01 2.48 16 31 H 0.01 0.29 7.59 -2.39 -0.02 0.27 16 32 H 0.04 1.74 6.76 -2.39 -0.02 1.72 16 33 H 0.09 2.55 7.63 -2.39 -0.02 2.53 16 34 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 35 H 0.08 1.68 7.99 -2.38 -0.02 1.66 16 36 H 0.06 1.62 6.28 -2.39 -0.02 1.61 16 37 H 0.05 2.01 7.28 -2.38 -0.02 1.99 16 38 H 0.09 2.80 5.73 -2.39 -0.01 2.78 16 39 H 0.00 0.11 7.74 -2.39 -0.02 0.09 16 40 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 41 H 0.00 0.07 6.77 -2.39 -0.02 0.05 16 42 H 0.08 4.24 5.13 -2.39 -0.01 4.23 16 Total: -1.00 -61.59 305.92 0.26 -61.33 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.97 Total: 12.10 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 4.71 Total: -12.21 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -7.44 Total: -107.68 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -61.59 0.26 -61.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220427690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.182 kcal (2) G-P(sol) polarization free energy of solvation -61.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds