Wall clock time and date at job start Mon Mar 30 2020 03:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47016 * 2 1 4 4 N 1.46893 * 109.47003 * 180.02562 * 3 2 1 5 5 C 1.48067 * 111.00116 * 297.48332 * 4 3 2 6 6 C 1.50741 * 112.94193 * 192.22375 * 5 4 3 7 7 C 1.54514 * 108.94568 * 92.64508 * 6 5 4 8 8 H 1.09001 * 109.07060 * 44.51849 * 7 6 5 9 9 C 1.52998 * 109.01337 * 163.50633 * 7 6 5 10 10 N 1.40077 * 111.51191 * 283.99142 * 7 6 5 11 11 C 1.46897 * 110.99947 * 188.14918 * 10 7 6 12 12 C 1.47686 * 114.56999 * 61.45146 * 10 7 6 13 13 C 1.47743 * 111.00031 * 169.88386 * 4 3 2 14 14 H 1.09000 * 108.99914 * 205.48043 * 13 4 3 15 15 C 1.50698 * 108.99493 * 324.31478 * 13 4 3 16 16 H 1.08002 * 119.99747 * 355.11089 * 15 13 4 17 17 C 1.37877 * 120.00593 * 175.11838 * 15 13 4 18 18 N 1.31518 * 119.99733 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00326 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46954 * 89.99483 * 19 17 15 21 21 H 1.48497 * 109.47019 * 209.99721 * 19 17 15 22 22 H 1.48495 * 109.46890 * 329.99966 * 19 17 15 23 23 H 1.08993 * 109.46959 * 60.00476 * 1 2 3 24 24 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47005 * 299.99706 * 1 2 3 26 26 H 1.09001 * 109.46957 * 239.99783 * 2 1 3 27 27 H 1.08993 * 109.47171 * 120.00279 * 2 1 3 28 28 H 1.08997 * 109.46772 * 59.99782 * 3 2 1 29 29 H 1.09004 * 109.46958 * 300.00061 * 3 2 1 30 30 H 1.08998 * 108.79181 * 71.32558 * 5 4 3 31 31 H 1.09004 * 108.69913 * 313.05270 * 5 4 3 32 32 H 1.09005 * 109.55717 * 332.80955 * 6 5 4 33 33 H 1.08995 * 109.55951 * 212.49183 * 6 5 4 34 34 H 1.09003 * 109.46719 * 181.98009 * 9 7 6 35 35 H 1.09000 * 109.47692 * 301.96876 * 9 7 6 36 36 H 1.08994 * 109.47557 * 61.97629 * 9 7 6 37 37 H 1.09001 * 109.47045 * 60.00382 * 11 10 7 38 38 H 1.08999 * 109.47044 * 299.99773 * 11 10 7 39 39 H 1.09006 * 109.47369 * 180.02562 * 11 10 7 40 40 H 1.09004 * 109.73571 * 38.33653 * 12 10 7 41 41 H 1.08998 * 109.74116 * 159.03627 * 12 10 7 42 42 H 0.96997 * 119.99782 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0401 0.8044 1.2254 6 6 5.5174 1.0364 1.4157 7 6 5.7191 2.2921 2.2931 8 1 5.0257 2.2546 3.1334 9 6 7.1524 2.3015 2.8281 10 7 5.4941 3.4682 1.5662 11 6 5.8737 4.6517 2.3491 12 6 4.1254 3.6057 1.0289 13 6 4.0383 2.8004 -0.2429 14 1 5.0339 2.7205 -0.6794 15 6 3.1332 3.5137 -1.2140 16 1 2.3065 2.9875 -1.6679 17 6 3.3606 4.8380 -1.5232 18 7 4.3671 5.4789 -0.9702 19 14 2.2390 5.7218 -2.7275 20 1 1.1122 6.3455 -1.9881 21 1 3.0077 6.7748 -3.4384 22 1 1.7054 4.7478 -3.7131 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.8575 -0.2687 1.1700 31 1 3.5077 1.2065 2.0874 32 1 5.9907 1.1891 0.4458 33 1 5.9620 0.1717 1.9083 34 1 7.2924 3.1662 3.4768 35 1 7.3346 1.3887 3.3953 36 1 7.8514 2.3563 1.9936 37 1 6.9322 4.5950 2.6033 38 1 5.2818 4.6876 3.2636 39 1 5.6885 5.5509 1.7614 40 1 3.4054 3.2270 1.7544 41 1 3.9172 4.6542 0.8156 42 1 4.5268 6.4106 -1.1875 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220428443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:25 Heat of formation + Delta-G solvation = 25.281566 kcal Electronic energy + Delta-G solvation = -19117.903243 eV Core-core repulsion = 16519.611371 eV Total energy + Delta-G solvation = -2598.291873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16781 -36.17731 -33.55609 -32.65987 -31.25255 -28.60804 -27.92109 -25.31857 -24.76170 -23.37077 -22.24495 -20.72715 -19.38820 -18.57992 -16.38484 -15.37849 -15.06015 -14.49965 -14.44555 -14.13194 -13.99449 -13.60800 -12.74267 -12.57091 -12.51265 -12.37981 -11.74751 -11.57562 -11.31638 -11.27768 -11.19806 -10.94810 -10.79958 -10.73927 -10.70025 -10.46501 -10.21339 -10.01458 -9.82176 -9.60242 -9.45869 -8.64785 -8.30123 -7.34800 -6.83492 -5.94999 -4.05212 3.29973 3.37716 3.40854 4.41227 4.84447 5.01037 5.30500 5.35922 5.47611 5.52175 5.60186 5.78088 5.83716 5.94099 6.03770 6.05538 6.13439 6.21113 6.24060 6.27210 6.34320 6.36903 6.46564 6.50349 6.55772 6.59544 6.69428 6.71640 6.86935 6.93958 6.97983 7.20598 7.46252 7.74088 7.85901 8.11039 8.20895 8.42665 8.56290 8.76313 9.05310 9.59143 11.04728 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.012062 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.199241 B = 2320.838848 C = 3870.991920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.545 5.545 5 C 0.063 3.937 6 C -0.113 4.113 7 C 0.102 3.898 8 H 0.007 0.993 9 C -0.148 4.148 10 N -0.542 5.542 11 C 0.038 3.962 12 C 0.054 3.946 13 C 0.219 3.781 14 H 0.053 0.947 15 C -0.518 4.518 16 H 0.070 0.930 17 C 0.060 3.940 18 N -0.877 5.877 19 Si 0.890 3.110 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.014 0.986 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.002 0.998 39 H 0.073 0.927 40 H -0.007 1.007 41 H 0.119 0.881 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 -6.027 5.906 8.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.069 4.069 4 N -0.270 5.270 5 C -0.065 4.065 6 C -0.151 4.151 7 C -0.009 4.009 8 H 0.024 0.976 9 C -0.206 4.206 10 N -0.266 5.266 11 C -0.110 4.110 12 C -0.073 4.073 13 C 0.113 3.887 14 H 0.070 0.930 15 C -0.557 4.557 16 H 0.088 0.912 17 C -0.142 4.142 18 N -0.515 5.515 19 Si 0.718 3.282 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.032 0.968 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.091 0.909 40 H 0.011 0.989 41 H 0.137 0.863 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.280 -6.157 5.154 8.034 hybrid contribution -1.341 1.088 0.899 1.947 sum -1.061 -5.068 6.053 7.965 Atomic orbital electron populations 1.21723 0.96718 1.00553 1.01582 1.21619 0.94498 0.98631 1.01387 1.22212 0.88859 0.94157 1.01716 1.62204 1.06266 1.24667 1.33907 1.21733 0.94745 0.98159 0.91867 1.21559 0.96456 0.95836 1.01215 1.20509 0.95170 0.91884 0.93350 0.97554 1.22057 0.97237 1.00546 1.00743 1.58936 1.28543 1.00404 1.38694 1.22302 0.98902 0.94716 0.95080 1.22698 0.83011 1.06446 0.95180 1.19110 0.96806 0.80949 0.91844 0.92967 1.21524 1.13697 0.95562 1.24879 0.91225 1.24959 0.95398 0.97545 0.96268 1.69958 1.28440 1.10515 1.42616 0.86621 0.80561 0.79516 0.81463 1.20948 1.21267 1.19883 0.92730 0.93517 0.93339 0.91825 0.93285 0.96782 0.88374 0.92750 0.96771 0.89797 0.92156 0.92873 0.93321 0.91909 0.92663 0.97971 0.90852 0.98919 0.86291 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -2.04 5.77 -26.73 -0.15 -2.19 16 3 C 0.06 1.19 4.37 -3.83 -0.02 1.17 16 4 N -0.55 -11.94 4.71 -229.10 -1.08 -13.01 16 5 C 0.06 1.21 4.34 -4.31 -0.02 1.19 16 6 C -0.11 -2.04 5.02 -27.07 -0.14 -2.18 16 7 C 0.10 1.88 2.07 -70.44 -0.15 1.74 16 8 H 0.01 0.13 7.60 -51.93 -0.39 -0.26 16 9 C -0.15 -2.27 8.51 37.16 0.32 -1.96 16 10 N -0.54 -11.58 4.07 -239.66 -0.97 -12.56 16 11 C 0.04 0.73 8.84 60.06 0.53 1.26 16 12 C 0.05 1.29 4.38 -4.50 -0.02 1.27 16 13 C 0.22 5.46 1.95 -69.51 -0.14 5.32 16 14 H 0.05 1.48 7.19 -51.93 -0.37 1.11 16 15 C -0.52 -13.72 7.85 -34.44 -0.27 -13.99 16 16 H 0.07 1.83 5.20 -52.49 -0.27 1.56 16 17 C 0.06 1.60 5.05 -17.82 -0.09 1.51 16 18 N -0.88 -23.89 11.01 55.43 0.61 -23.28 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.78 6.71 -51.93 -0.35 0.43 16 28 H 0.01 0.30 7.74 -51.93 -0.40 -0.10 16 29 H 0.10 2.16 5.00 -51.93 -0.26 1.90 16 30 H 0.05 0.95 6.97 -51.93 -0.36 0.59 16 31 H 0.01 0.28 6.33 -51.93 -0.33 -0.04 16 32 H 0.08 1.71 7.19 -51.93 -0.37 1.33 16 33 H 0.06 0.92 8.02 -51.93 -0.42 0.50 16 34 H 0.05 0.77 6.11 -51.93 -0.32 0.46 16 35 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.94 5.99 -51.93 -0.31 0.63 16 38 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.07 1.53 7.84 -51.93 -0.41 1.12 16 40 H -0.01 -0.18 6.37 -51.93 -0.33 -0.51 16 41 H 0.12 3.18 4.77 -51.93 -0.25 2.93 16 42 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -26.81 303.02 -8.91 -35.71 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.24 Total: 1.40 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 0.23 Total: -8.57 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -1.44 Total: -48.85 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.81 -8.91 -35.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220428443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.996 kcal (2) G-P(sol) polarization free energy of solvation -26.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds