Wall clock time and date at job start Mon Mar 30 2020 03:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47016 * 2 1 4 4 N 1.46893 * 109.47003 * 180.02562 * 3 2 1 5 5 C 1.48067 * 111.00116 * 297.48332 * 4 3 2 6 6 C 1.50741 * 112.94193 * 192.22375 * 5 4 3 7 7 C 1.54514 * 108.94568 * 92.64508 * 6 5 4 8 8 H 1.09001 * 109.07060 * 44.51849 * 7 6 5 9 9 C 1.52998 * 109.01337 * 163.50633 * 7 6 5 10 10 N 1.40077 * 111.51191 * 283.99142 * 7 6 5 11 11 C 1.46897 * 110.99947 * 188.14918 * 10 7 6 12 12 C 1.47686 * 114.56999 * 61.45146 * 10 7 6 13 13 C 1.47743 * 111.00031 * 169.88386 * 4 3 2 14 14 H 1.09000 * 108.99914 * 205.48043 * 13 4 3 15 15 C 1.50698 * 108.99493 * 324.31478 * 13 4 3 16 16 H 1.08002 * 119.99747 * 355.11089 * 15 13 4 17 17 C 1.37877 * 120.00593 * 175.11838 * 15 13 4 18 18 N 1.31518 * 119.99733 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00326 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46954 * 89.99483 * 19 17 15 21 21 H 1.48497 * 109.47019 * 209.99721 * 19 17 15 22 22 H 1.48495 * 109.46890 * 329.99966 * 19 17 15 23 23 H 1.08993 * 109.46959 * 60.00476 * 1 2 3 24 24 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47005 * 299.99706 * 1 2 3 26 26 H 1.09001 * 109.46957 * 239.99783 * 2 1 3 27 27 H 1.08993 * 109.47171 * 120.00279 * 2 1 3 28 28 H 1.08997 * 109.46772 * 59.99782 * 3 2 1 29 29 H 1.09004 * 109.46958 * 300.00061 * 3 2 1 30 30 H 1.08998 * 108.79181 * 71.32558 * 5 4 3 31 31 H 1.09004 * 108.69913 * 313.05270 * 5 4 3 32 32 H 1.09005 * 109.55717 * 332.80955 * 6 5 4 33 33 H 1.08995 * 109.55951 * 212.49183 * 6 5 4 34 34 H 1.09003 * 109.46719 * 181.98009 * 9 7 6 35 35 H 1.09000 * 109.47692 * 301.96876 * 9 7 6 36 36 H 1.08994 * 109.47557 * 61.97629 * 9 7 6 37 37 H 1.09001 * 109.47045 * 60.00382 * 11 10 7 38 38 H 1.08999 * 109.47044 * 299.99773 * 11 10 7 39 39 H 1.09006 * 109.47369 * 180.02562 * 11 10 7 40 40 H 1.09004 * 109.73571 * 38.33653 * 12 10 7 41 41 H 1.08998 * 109.74116 * 159.03627 * 12 10 7 42 42 H 0.96997 * 119.99782 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0401 0.8044 1.2254 6 6 5.5174 1.0364 1.4157 7 6 5.7191 2.2921 2.2931 8 1 5.0257 2.2546 3.1334 9 6 7.1524 2.3015 2.8281 10 7 5.4941 3.4682 1.5662 11 6 5.8737 4.6517 2.3491 12 6 4.1254 3.6057 1.0289 13 6 4.0383 2.8004 -0.2429 14 1 5.0339 2.7205 -0.6794 15 6 3.1332 3.5137 -1.2140 16 1 2.3065 2.9875 -1.6679 17 6 3.3606 4.8380 -1.5232 18 7 4.3671 5.4789 -0.9702 19 14 2.2390 5.7218 -2.7275 20 1 1.1122 6.3455 -1.9881 21 1 3.0077 6.7748 -3.4384 22 1 1.7054 4.7478 -3.7131 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.8575 -0.2687 1.1700 31 1 3.5077 1.2065 2.0874 32 1 5.9907 1.1891 0.4458 33 1 5.9620 0.1717 1.9083 34 1 7.2924 3.1662 3.4768 35 1 7.3346 1.3887 3.3953 36 1 7.8514 2.3563 1.9936 37 1 6.9322 4.5950 2.6033 38 1 5.2818 4.6876 3.2636 39 1 5.6885 5.5509 1.7614 40 1 3.4054 3.2270 1.7544 41 1 3.9172 4.6542 0.8156 42 1 4.5268 6.4106 -1.1875 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220428443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:25 Heat of formation + Delta-G solvation = 8.012827 kcal Electronic energy + Delta-G solvation = -19118.652072 eV Core-core repulsion = 16519.611371 eV Total energy + Delta-G solvation = -2599.040701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82991 -37.78830 -35.40362 -34.10571 -33.00488 -30.08359 -29.66199 -27.03191 -26.41370 -24.96830 -23.91735 -22.23630 -20.93004 -20.38463 -18.26792 -17.18242 -16.72725 -16.16182 -16.05398 -15.77492 -15.58505 -15.16636 -14.25190 -14.19120 -14.02497 -13.87657 -13.29186 -13.10006 -12.93301 -12.84461 -12.71647 -12.62517 -12.51917 -12.41237 -12.21198 -12.01341 -11.76116 -11.69073 -11.51124 -11.20502 -11.12951 -10.54250 -10.34170 -9.04468 -8.58282 -7.99648 -6.16476 1.42625 1.44940 1.53947 2.44987 3.16252 3.28921 3.41733 3.90359 4.06558 4.14156 4.30004 4.34764 4.44404 4.52763 4.56586 4.59123 4.62340 4.75571 4.81470 4.86003 4.92574 4.97297 5.01069 5.06518 5.12089 5.13125 5.19131 5.26031 5.34680 5.38542 5.47006 5.49278 5.60502 5.78567 5.85683 6.22117 6.42994 6.56966 6.79937 6.96948 7.04670 7.51588 8.98784 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.012062 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.199241 B = 2320.838848 C = 3870.991920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.063 3.937 4 N -0.556 5.556 5 C 0.064 3.936 6 C -0.109 4.109 7 C 0.094 3.906 8 H 0.003 0.997 9 C -0.139 4.139 10 N -0.556 5.556 11 C 0.043 3.957 12 C 0.071 3.929 13 C 0.230 3.770 14 H 0.011 0.989 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.018 3.982 18 N -0.896 5.896 19 Si 0.951 3.049 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.271 1.271 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.059 0.941 28 H -0.001 1.001 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.005 0.995 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.011 0.989 39 H 0.049 0.951 40 H -0.019 1.019 41 H 0.090 0.910 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -7.410 6.749 10.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.064 4.064 4 N -0.281 5.281 5 C -0.064 4.064 6 C -0.147 4.147 7 C -0.016 4.016 8 H 0.020 0.980 9 C -0.196 4.196 10 N -0.280 5.280 11 C -0.105 4.105 12 C -0.057 4.057 13 C 0.123 3.877 14 H 0.029 0.971 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.182 4.182 18 N -0.535 5.535 19 Si 0.777 3.223 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.196 1.196 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.017 0.983 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.023 0.977 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.029 0.971 39 H 0.068 0.932 40 H -0.001 1.001 41 H 0.108 0.892 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.170 -7.555 6.006 9.653 hybrid contribution -1.283 1.490 0.656 2.073 sum -1.113 -6.065 6.663 9.078 Atomic orbital electron populations 1.21693 0.94658 1.02251 1.01544 1.21529 0.96234 0.95561 1.01808 1.22160 0.87870 0.96629 0.99779 1.62142 1.07258 1.22908 1.35779 1.21839 0.95333 0.99044 0.90140 1.21588 0.95602 0.97208 1.00263 1.20678 0.97310 0.90724 0.92902 0.97977 1.21978 0.94350 1.02512 1.00790 1.58914 1.26619 1.02316 1.40194 1.22273 1.00630 0.93016 0.94583 1.22300 0.84527 1.04168 0.94689 1.18779 0.94487 0.82651 0.91776 0.97102 1.21826 1.14035 0.96144 1.25547 0.91434 1.25638 0.96652 0.98203 0.97736 1.70097 1.29540 1.10542 1.43360 0.85669 0.78873 0.78269 0.79460 1.20445 1.21144 1.19567 0.93032 0.90911 0.93201 0.91881 0.92224 0.98324 0.90633 0.90320 0.97660 0.92346 0.88384 0.92033 0.90414 0.92498 0.89980 0.97099 0.93240 1.00126 0.89193 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.11 -3.57 5.77 30.60 0.18 -3.40 16 3 C 0.06 2.60 4.37 86.31 0.38 2.98 16 4 N -0.56 -24.63 4.71 -878.73 -4.14 -28.77 16 5 C 0.06 2.38 4.34 85.34 0.37 2.75 16 6 C -0.11 -3.79 5.02 30.38 0.15 -3.63 16 7 C 0.09 3.37 2.07 46.66 0.10 3.47 16 8 H 0.00 0.10 7.60 -2.39 -0.02 0.08 16 9 C -0.14 -3.88 8.51 71.98 0.61 -3.26 16 10 N -0.56 -24.00 4.07 -912.13 -3.71 -27.71 16 11 C 0.04 1.63 8.84 127.69 1.13 2.76 16 12 C 0.07 3.55 4.38 85.43 0.37 3.92 16 13 C 0.23 11.88 1.95 43.29 0.08 11.97 16 14 H 0.01 0.66 7.19 -2.39 -0.02 0.65 16 15 C -0.54 -29.39 7.85 25.60 0.20 -29.19 16 16 H 0.07 3.66 5.20 -2.91 -0.02 3.64 16 17 C 0.02 0.95 5.05 84.65 0.43 1.38 16 18 N -0.90 -50.35 11.01 21.45 0.24 -50.12 16 19 Si 0.95 43.37 29.54 68.60 2.03 45.40 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 1.75 6.71 -2.39 -0.02 1.74 16 28 H 0.00 -0.06 7.74 -2.39 -0.02 -0.08 16 29 H 0.08 3.41 5.00 -2.38 -0.01 3.40 16 30 H 0.08 2.55 6.97 -2.39 -0.02 2.53 16 31 H 0.01 0.21 6.33 -2.38 -0.02 0.19 16 32 H 0.06 2.36 7.19 -2.38 -0.02 2.35 16 33 H 0.10 2.66 8.02 -2.39 -0.02 2.64 16 34 H 0.06 1.61 6.11 -2.39 -0.01 1.59 16 35 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 2.67 5.99 -2.39 -0.01 2.66 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 39 H 0.05 2.11 7.84 -2.38 -0.02 2.09 16 40 H -0.02 -0.98 6.37 -2.39 -0.02 -1.00 16 41 H 0.09 5.02 4.77 -2.39 -0.01 5.01 16 42 H 0.26 13.91 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -59.49 303.02 0.11 -59.38 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.98 Total: 15.11 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 4.72 Total: -13.29 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -7.61 Total: -106.60 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -59.49 0.11 -59.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220428443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.390 kcal (2) G-P(sol) polarization free energy of solvation -59.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds