Wall clock time and date at job start Mon Mar 30 2020 04:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47269 * 2 1 4 4 N 1.46898 * 109.47087 * 120.00154 * 2 1 3 5 5 C 1.46901 * 110.99944 * 170.20645 * 4 2 1 6 6 C 1.50706 * 109.47283 * 293.95602 * 5 4 2 7 7 H 1.07998 * 119.99812 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00283 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99901 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00245 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46988 * 179.97438 * 10 8 6 12 12 H 1.48493 * 109.46662 * 299.99743 * 10 8 6 13 13 H 1.48505 * 109.46977 * 59.99506 * 10 8 6 14 14 C 1.46894 * 111.00109 * 294.15797 * 4 2 1 15 15 H 1.09008 * 109.46887 * 32.50891 * 14 4 2 16 16 C 1.52995 * 109.47478 * 272.50433 * 14 4 2 17 17 C 1.52996 * 109.47321 * 179.97438 * 16 14 4 18 18 C 1.53002 * 109.46927 * 60.00196 * 17 16 14 19 19 C 1.52998 * 109.47316 * 300.00090 * 18 17 16 20 20 H 1.09000 * 109.46957 * 179.97438 * 19 18 17 21 21 N 1.46903 * 109.47078 * 299.99803 * 19 18 17 22 22 C 1.52999 * 109.47062 * 59.99715 * 19 18 17 23 23 H 1.09006 * 109.46757 * 306.12436 * 1 2 3 24 24 H 1.08991 * 109.47135 * 66.12252 * 1 2 3 25 25 H 1.09003 * 109.47385 * 186.13040 * 1 2 3 26 26 H 1.09003 * 109.46755 * 239.99906 * 2 1 3 27 27 H 1.08999 * 109.47319 * 171.98470 * 3 2 1 28 28 H 1.09001 * 109.47111 * 291.98209 * 3 2 1 29 29 H 1.09001 * 109.47121 * 51.97952 * 3 2 1 30 30 H 1.09003 * 109.47077 * 173.95390 * 5 4 2 31 31 H 1.08998 * 109.47113 * 53.94973 * 5 4 2 32 32 H 0.97004 * 119.99920 * 0.02562 * 9 8 6 33 33 H 1.08993 * 109.47210 * 300.00428 * 16 14 4 34 34 H 1.09000 * 109.46601 * 59.99913 * 16 14 4 35 35 H 1.08997 * 109.47400 * 300.00108 * 17 16 14 36 36 H 1.09001 * 109.47414 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47191 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47086 * 60.00294 * 18 17 16 39 39 H 1.00905 * 110.99756 * 300.00237 * 21 19 18 40 40 H 1.00905 * 111.00021 * 63.95303 * 21 19 18 41 41 H 1.09001 * 109.47280 * 180.02562 * 22 19 18 42 42 H 1.08997 * 109.47173 * 60.00472 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4693 -0.9175 1.1225 6 6 3.7694 -1.8819 0.0040 7 1 2.9638 -2.2875 -0.5900 8 6 5.0723 -2.2472 -0.2604 9 7 6.0533 -1.7537 0.4633 10 14 5.4442 -3.4432 -1.6463 11 1 6.9096 -3.6705 -1.7241 12 1 4.7559 -4.7328 -1.3852 13 1 4.9626 -2.8765 -2.9317 14 6 1.6660 0.0494 2.4169 15 1 0.7139 0.5588 2.2682 16 6 2.7546 1.0809 2.7200 17 6 2.3858 1.8540 3.9877 18 6 2.2649 0.8804 5.1617 19 6 1.1764 -0.1512 4.8587 20 1 1.0906 -0.8451 5.6950 21 7 -0.1067 0.5354 4.6579 22 6 1.5451 -0.9243 3.5909 23 1 -0.3633 0.6059 0.8301 24 1 -0.3633 0.4159 -0.9396 25 1 -0.3634 -1.0218 0.1097 26 1 1.8933 -0.5139 -0.8900 27 1 3.1206 1.4458 0.1433 28 1 1.7985 1.9132 -0.9530 29 1 1.5644 1.9960 0.8096 30 1 3.8230 -1.3337 2.0658 31 1 3.9743 0.0293 0.9310 32 1 5.8602 -1.1330 1.1832 33 1 3.7066 0.5715 2.8685 34 1 2.8404 1.7747 1.8837 35 1 1.4339 2.3635 3.8386 36 1 3.1611 2.5892 4.2033 37 1 2.0027 1.4312 6.0650 38 1 3.2169 0.3709 5.3108 39 1 -0.3723 1.0536 5.4819 40 1 -0.0723 1.1365 3.8482 41 1 0.7694 -1.6589 3.3748 42 1 2.4971 -1.4338 3.7400 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223153890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:01 Heat of formation + Delta-G solvation = -9.051834 kcal Electronic energy + Delta-G solvation = -19110.260983 eV Core-core repulsion = 16510.480302 eV Total energy + Delta-G solvation = -2599.780681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78591 -36.82858 -33.04682 -32.32377 -31.15944 -28.98187 -28.16773 -26.79867 -25.45055 -22.75641 -22.12254 -21.50118 -19.26176 -18.43372 -16.54275 -16.08010 -15.56795 -14.80567 -14.46272 -14.09213 -13.83994 -13.67097 -13.50581 -13.30850 -12.43390 -12.23987 -12.16861 -11.72105 -11.64001 -11.53055 -11.21232 -11.15644 -10.91842 -10.85878 -10.70213 -10.46672 -10.43732 -10.07101 -10.00728 -9.60184 -9.46083 -8.58447 -8.56142 -8.32264 -7.16712 -6.32370 -4.00221 3.46227 3.48605 3.66820 4.54173 4.68759 4.72596 4.96160 5.01848 5.16572 5.41888 5.43966 5.52507 5.55731 5.68489 5.72388 5.74449 5.82583 5.92683 5.96064 6.00773 6.11907 6.13941 6.18217 6.26925 6.35211 6.44668 6.46534 6.53789 6.73697 6.77565 6.80476 6.87395 7.14808 7.23247 7.27745 7.52001 7.92420 8.13083 8.42889 8.65501 8.92966 9.69765 11.06491 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.007597 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.349956 B = 3684.891395 C = 4080.157948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 C -0.182 4.182 4 N -0.518 5.518 5 C 0.183 3.817 6 C -0.586 4.586 7 H 0.055 0.945 8 C 0.014 3.986 9 N -0.916 5.916 10 Si 1.069 2.931 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.289 1.289 14 C 0.085 3.915 15 H 0.070 0.930 16 C -0.168 4.168 17 C -0.115 4.115 18 C -0.154 4.154 19 C 0.093 3.907 20 H 0.076 0.924 21 N -0.842 5.842 22 C -0.098 4.098 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.018 0.982 31 H -0.012 1.012 32 H 0.265 0.735 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.332 0.668 40 H 0.339 0.661 41 H 0.071 0.929 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 7.206 5.935 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.241 4.241 4 N -0.240 5.240 5 C 0.058 3.942 6 C -0.625 4.625 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.553 5.553 10 Si 0.898 3.102 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.216 1.216 14 C -0.024 4.024 15 H 0.088 0.912 16 C -0.207 4.207 17 C -0.153 4.153 18 C -0.193 4.193 19 C -0.019 4.019 20 H 0.094 0.906 21 N -0.372 5.372 22 C -0.136 4.136 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.006 0.994 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.154 0.846 41 H 0.090 0.910 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.829 5.186 5.052 11.418 hybrid contribution -0.152 2.561 1.003 2.755 sum -8.981 7.748 6.055 13.317 Atomic orbital electron populations 1.21877 0.96005 1.01818 1.00082 1.21587 0.93730 0.91756 0.95678 1.22701 1.02062 0.98876 1.00456 1.62344 1.17653 1.44536 0.99476 1.19840 0.82265 0.95021 0.97109 1.22031 0.94765 1.28493 1.17196 0.92681 1.25784 0.92444 0.99381 1.01354 1.70804 1.34076 1.30365 1.20057 0.83532 0.75976 0.75693 0.75015 1.20941 1.21430 1.21570 1.21621 0.96825 0.92475 0.91470 0.91176 1.22767 1.01178 0.99318 0.97434 1.21486 1.00537 0.97687 0.95639 1.22341 1.01037 0.98357 0.97568 1.21452 0.86997 0.94923 0.98573 0.90604 1.59023 1.31639 1.37957 1.08627 1.21506 1.01922 0.97839 0.92360 0.93556 0.93350 0.92144 0.89074 0.91870 0.93527 0.93130 0.96431 0.99403 0.92444 0.91101 0.90566 0.93007 0.92541 0.92776 0.91458 0.85608 0.84605 0.91014 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.05 37.16 0.34 -1.89 16 2 C 0.08 1.56 2.77 -67.71 -0.19 1.37 16 3 C -0.18 -3.16 7.34 37.16 0.27 -2.89 16 4 N -0.52 -10.84 4.33 -220.14 -0.95 -11.79 16 5 C 0.18 4.58 2.51 -4.97 -0.01 4.57 16 6 C -0.59 -16.49 8.37 -34.44 -0.29 -16.78 16 7 H 0.05 1.56 7.18 -52.49 -0.38 1.19 16 8 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 9 N -0.92 -27.83 13.65 55.43 0.76 -27.07 16 10 Si 1.07 25.50 29.90 -169.99 -5.08 20.41 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.09 1.47 1.27 -67.72 -0.09 1.39 16 15 H 0.07 1.14 4.02 -51.92 -0.21 0.93 16 16 C -0.17 -2.81 3.63 -26.74 -0.10 -2.91 16 17 C -0.12 -1.53 5.66 -26.73 -0.15 -1.69 16 18 C -0.15 -1.95 5.61 -26.73 -0.15 -2.10 16 19 C 0.09 1.24 3.69 -67.71 -0.25 0.99 16 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 21 N -0.84 -10.16 9.12 -4.67 -0.04 -10.20 16 22 C -0.10 -1.64 5.12 -26.73 -0.14 -1.78 16 23 H 0.05 0.68 6.43 -51.93 -0.33 0.35 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.99 6.65 -51.93 -0.35 1.65 16 27 H 0.06 1.25 5.44 -51.93 -0.28 0.96 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.79 5.97 -51.93 -0.31 0.48 16 30 H 0.02 0.48 6.59 -51.93 -0.34 0.14 16 31 H -0.01 -0.30 5.10 -51.93 -0.26 -0.57 16 32 H 0.27 8.03 7.22 -40.82 -0.29 7.73 16 33 H 0.07 1.38 6.38 -51.93 -0.33 1.05 16 34 H 0.08 1.30 4.15 -51.93 -0.22 1.09 16 35 H 0.05 0.62 6.76 -51.93 -0.35 0.27 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.33 3.30 9.04 -39.29 -0.36 2.95 16 40 H 0.34 4.13 5.44 -39.29 -0.21 3.91 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.23 7.26 -51.93 -0.38 0.86 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -29.40 297.58 -8.47 -37.87 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.78 Total: 7.72 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -0.85 Total: -21.42 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.24 Total: -49.07 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.40 -8.47 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223153890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.814 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds