Wall clock time and date at job start Mon Mar 30 2020 04:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47269 * 2 1 4 4 N 1.46898 * 109.47087 * 120.00154 * 2 1 3 5 5 C 1.46901 * 110.99944 * 170.20645 * 4 2 1 6 6 C 1.50706 * 109.47283 * 293.95602 * 5 4 2 7 7 H 1.07998 * 119.99812 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00283 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99901 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00245 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46988 * 179.97438 * 10 8 6 12 12 H 1.48493 * 109.46662 * 299.99743 * 10 8 6 13 13 H 1.48505 * 109.46977 * 59.99506 * 10 8 6 14 14 C 1.46894 * 111.00109 * 294.15797 * 4 2 1 15 15 H 1.09008 * 109.46887 * 32.50891 * 14 4 2 16 16 C 1.52995 * 109.47478 * 272.50433 * 14 4 2 17 17 C 1.52996 * 109.47321 * 179.97438 * 16 14 4 18 18 C 1.53002 * 109.46927 * 60.00196 * 17 16 14 19 19 C 1.52998 * 109.47316 * 300.00090 * 18 17 16 20 20 H 1.09000 * 109.46957 * 179.97438 * 19 18 17 21 21 N 1.46903 * 109.47078 * 299.99803 * 19 18 17 22 22 C 1.52999 * 109.47062 * 59.99715 * 19 18 17 23 23 H 1.09006 * 109.46757 * 306.12436 * 1 2 3 24 24 H 1.08991 * 109.47135 * 66.12252 * 1 2 3 25 25 H 1.09003 * 109.47385 * 186.13040 * 1 2 3 26 26 H 1.09003 * 109.46755 * 239.99906 * 2 1 3 27 27 H 1.08999 * 109.47319 * 171.98470 * 3 2 1 28 28 H 1.09001 * 109.47111 * 291.98209 * 3 2 1 29 29 H 1.09001 * 109.47121 * 51.97952 * 3 2 1 30 30 H 1.09003 * 109.47077 * 173.95390 * 5 4 2 31 31 H 1.08998 * 109.47113 * 53.94973 * 5 4 2 32 32 H 0.97004 * 119.99920 * 0.02562 * 9 8 6 33 33 H 1.08993 * 109.47210 * 300.00428 * 16 14 4 34 34 H 1.09000 * 109.46601 * 59.99913 * 16 14 4 35 35 H 1.08997 * 109.47400 * 300.00108 * 17 16 14 36 36 H 1.09001 * 109.47414 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47191 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47086 * 60.00294 * 18 17 16 39 39 H 1.00905 * 110.99756 * 300.00237 * 21 19 18 40 40 H 1.00905 * 111.00021 * 63.95303 * 21 19 18 41 41 H 1.09001 * 109.47280 * 180.02562 * 22 19 18 42 42 H 1.08997 * 109.47173 * 60.00472 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4693 -0.9175 1.1225 6 6 3.7694 -1.8819 0.0040 7 1 2.9638 -2.2875 -0.5900 8 6 5.0723 -2.2472 -0.2604 9 7 6.0533 -1.7537 0.4633 10 14 5.4442 -3.4432 -1.6463 11 1 6.9096 -3.6705 -1.7241 12 1 4.7559 -4.7328 -1.3852 13 1 4.9626 -2.8765 -2.9317 14 6 1.6660 0.0494 2.4169 15 1 0.7139 0.5588 2.2682 16 6 2.7546 1.0809 2.7200 17 6 2.3858 1.8540 3.9877 18 6 2.2649 0.8804 5.1617 19 6 1.1764 -0.1512 4.8587 20 1 1.0906 -0.8451 5.6950 21 7 -0.1067 0.5354 4.6579 22 6 1.5451 -0.9243 3.5909 23 1 -0.3633 0.6059 0.8301 24 1 -0.3633 0.4159 -0.9396 25 1 -0.3634 -1.0218 0.1097 26 1 1.8933 -0.5139 -0.8900 27 1 3.1206 1.4458 0.1433 28 1 1.7985 1.9132 -0.9530 29 1 1.5644 1.9960 0.8096 30 1 3.8230 -1.3337 2.0658 31 1 3.9743 0.0293 0.9310 32 1 5.8602 -1.1330 1.1832 33 1 3.7066 0.5715 2.8685 34 1 2.8404 1.7747 1.8837 35 1 1.4339 2.3635 3.8386 36 1 3.1611 2.5892 4.2033 37 1 2.0027 1.4312 6.0650 38 1 3.2169 0.3709 5.3108 39 1 -0.3723 1.0536 5.4819 40 1 -0.0723 1.1365 3.8482 41 1 0.7694 -1.6589 3.3748 42 1 2.4971 -1.4338 3.7400 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223153890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:01 Heat of formation + Delta-G solvation = -29.710118 kcal Electronic energy + Delta-G solvation = -19111.156793 eV Core-core repulsion = 16510.480302 eV Total energy + Delta-G solvation = -2600.676491 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20024 -38.21157 -35.18389 -33.54392 -32.58297 -30.58690 -29.38826 -28.20303 -27.30607 -24.69672 -23.43123 -22.88058 -20.67031 -19.94570 -18.49738 -17.33686 -17.12516 -16.09152 -15.83465 -15.64434 -15.37942 -15.25450 -14.94478 -14.77442 -13.78084 -13.75943 -13.43298 -13.42256 -13.24273 -13.17679 -12.79667 -12.48178 -12.45186 -12.36085 -12.20021 -12.04799 -11.92796 -11.78873 -11.37233 -11.10003 -10.93032 -10.62288 -10.50020 -9.56066 -8.89891 -8.63769 -6.34191 1.50817 1.59364 1.78625 2.55518 3.15218 3.22422 3.64441 3.77430 3.82045 3.96430 4.10735 4.18633 4.22743 4.35869 4.40503 4.49072 4.57326 4.59854 4.64578 4.70059 4.75460 4.87801 4.90823 4.95313 5.04273 5.06608 5.10705 5.16868 5.19769 5.27023 5.35202 5.41550 5.43626 5.51434 5.89926 6.08688 6.27453 6.49528 6.56926 6.67414 6.78735 7.45440 8.73158 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.007597 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.349956 B = 3684.891395 C = 4080.157948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.075 3.925 3 C -0.172 4.172 4 N -0.532 5.532 5 C 0.206 3.794 6 C -0.598 4.598 7 H 0.049 0.951 8 C -0.038 4.038 9 N -0.939 5.939 10 Si 1.117 2.883 11 H -0.284 1.284 12 H -0.273 1.273 13 H -0.270 1.270 14 C 0.090 3.910 15 H 0.093 0.907 16 C -0.163 4.163 17 C -0.109 4.109 18 C -0.150 4.150 19 C 0.103 3.897 20 H 0.083 0.917 21 N -0.841 5.841 22 C -0.096 4.096 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.073 0.927 30 H -0.013 1.013 31 H -0.029 1.029 32 H 0.252 0.748 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.350 0.650 40 H 0.341 0.659 41 H 0.059 0.941 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 8.393 6.141 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.034 4.034 3 C -0.230 4.230 4 N -0.254 5.254 5 C 0.079 3.921 6 C -0.636 4.636 7 H 0.067 0.933 8 C -0.235 4.235 9 N -0.577 5.577 10 Si 0.938 3.062 11 H -0.209 1.209 12 H -0.198 1.198 13 H -0.195 1.195 14 C -0.019 4.019 15 H 0.111 0.889 16 C -0.202 4.202 17 C -0.147 4.147 18 C -0.189 4.189 19 C -0.009 4.009 20 H 0.101 0.899 21 N -0.373 5.373 22 C -0.134 4.134 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.005 0.995 31 H -0.011 1.011 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.078 0.922 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.080 6.397 5.279 13.840 hybrid contribution 0.493 2.201 0.955 2.450 sum -10.587 8.598 6.234 14.996 Atomic orbital electron populations 1.21779 0.92767 1.01887 1.02212 1.21651 0.96179 0.92146 0.93405 1.22574 0.99934 0.98062 1.02469 1.62259 1.14573 1.46740 1.01843 1.19382 0.85013 0.93256 0.94442 1.22389 0.94740 1.28721 1.17733 0.93300 1.27299 0.92613 1.00514 1.03070 1.70932 1.34713 1.31374 1.20727 0.82936 0.75947 0.74319 0.72981 1.20929 1.19792 1.19473 1.21685 0.97719 0.92509 0.89937 0.88909 1.22646 0.99010 0.99052 0.99469 1.21457 1.02008 0.97505 0.93722 1.22317 0.99943 0.98111 0.98539 1.21263 0.88017 0.95086 0.96552 0.89861 1.58938 1.30321 1.38409 1.09641 1.21460 0.99809 0.97915 0.94262 0.91708 0.90910 0.93089 0.92566 0.95153 0.91529 0.90828 0.99480 1.01139 0.93928 0.95147 0.90962 0.90455 0.91748 0.89754 0.93294 0.83624 0.84430 0.92229 0.94879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.05 71.98 0.65 -3.14 16 2 C 0.07 2.85 2.77 44.92 0.12 2.97 16 3 C -0.17 -5.82 7.34 71.98 0.53 -5.29 16 4 N -0.53 -22.84 4.33 -850.40 -3.68 -26.52 16 5 C 0.21 10.91 2.51 85.56 0.22 11.12 16 6 C -0.60 -34.94 8.37 25.60 0.21 -34.73 16 7 H 0.05 2.86 7.18 -2.91 -0.02 2.84 16 8 C -0.04 -2.25 5.46 84.65 0.46 -1.78 16 9 N -0.94 -59.30 13.65 21.45 0.29 -59.01 16 10 Si 1.12 51.86 29.90 68.60 2.05 53.91 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 14 C 0.09 3.09 1.27 44.92 0.06 3.14 16 15 H 0.09 2.77 4.02 -2.38 -0.01 2.77 16 16 C -0.16 -5.50 3.63 30.59 0.11 -5.38 16 17 C -0.11 -2.67 5.66 30.59 0.17 -2.50 16 18 C -0.15 -3.51 5.61 30.59 0.17 -3.34 16 19 C 0.10 2.58 3.69 44.91 0.17 2.74 16 20 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 21 N -0.84 -17.41 9.12 -168.68 -1.54 -18.95 16 22 C -0.10 -3.25 5.12 30.59 0.16 -3.09 16 23 H 0.06 1.66 6.43 -2.38 -0.02 1.65 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 26 H 0.06 2.51 6.65 -2.39 -0.02 2.50 16 27 H 0.03 1.21 5.44 -2.39 -0.01 1.20 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 2.12 5.97 -2.39 -0.01 2.11 16 30 H -0.01 -0.74 6.59 -2.39 -0.02 -0.76 16 31 H -0.03 -1.61 5.10 -2.39 -0.01 -1.62 16 32 H 0.25 16.15 7.22 -92.70 -0.67 15.48 16 33 H 0.03 1.25 6.38 -2.39 -0.02 1.24 16 34 H 0.07 2.47 4.15 -2.39 -0.01 2.46 16 35 H 0.08 1.55 6.76 -2.39 -0.02 1.53 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.35 5.46 9.04 -89.69 -0.81 4.65 16 40 H 0.34 6.92 5.44 -89.69 -0.49 6.44 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.03 1.31 7.26 -2.39 -0.02 1.30 16 Total: -1.00 -66.85 297.58 -0.03 -66.87 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.18 Total: 22.97 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 3.03 Total: -39.27 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -4.93 Total: -104.48 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.05 Total: 53.91 kcal Total: -66.85 -0.03 -66.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223153890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.164 kcal (2) G-P(sol) polarization free energy of solvation -66.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds