Wall clock time and date at job start Mon Mar 30 2020 04:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 N 1.46894 * 109.47309 * 120.00562 * 2 1 3 5 5 C 1.46905 * 110.99985 * 149.74319 * 4 2 1 6 6 C 1.50700 * 109.46823 * 298.72630 * 5 4 2 7 7 H 1.08001 * 120.00281 * 4.97104 * 6 5 4 8 8 C 1.37871 * 119.99889 * 184.96595 * 6 5 4 9 9 N 1.31517 * 120.00367 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00069 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47086 * 60.00302 * 10 8 6 12 12 H 1.48505 * 109.47069 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47165 * 300.00159 * 10 8 6 14 14 C 1.46904 * 110.99669 * 273.69075 * 4 2 1 15 15 H 1.08998 * 109.47374 * 295.43571 * 14 4 2 16 16 C 1.53006 * 109.46828 * 55.43755 * 14 4 2 17 17 C 1.53001 * 109.46821 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47482 * 299.99905 * 17 16 14 19 19 C 1.53006 * 109.47014 * 60.00213 * 18 17 16 20 20 H 1.08998 * 109.47294 * 59.99924 * 19 18 17 21 21 N 1.46905 * 109.46980 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.46987 * 175.43090 * 14 4 2 23 23 H 1.09000 * 109.46971 * 294.51316 * 1 2 3 24 24 H 1.08997 * 109.47296 * 54.51487 * 1 2 3 25 25 H 1.09006 * 109.47107 * 174.51875 * 1 2 3 26 26 H 1.09007 * 109.46528 * 240.00723 * 2 1 3 27 27 H 1.09004 * 109.46910 * 185.03916 * 3 2 1 28 28 H 1.08999 * 109.47654 * 305.03965 * 3 2 1 29 29 H 1.09003 * 109.47028 * 65.04484 * 3 2 1 30 30 H 1.08997 * 109.47243 * 58.73004 * 5 4 2 31 31 H 1.09000 * 109.46657 * 178.73431 * 5 4 2 32 32 H 0.96998 * 120.00881 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47294 * 59.99766 * 16 14 4 34 34 H 1.08998 * 109.46960 * 299.99255 * 16 14 4 35 35 H 1.08998 * 109.46891 * 179.97438 * 17 16 14 36 36 H 1.09007 * 109.46806 * 60.00127 * 17 16 14 37 37 H 1.08998 * 109.47152 * 300.00051 * 18 17 16 38 38 H 1.09001 * 109.47545 * 179.97438 * 18 17 16 39 39 H 1.00892 * 110.99698 * 299.99603 * 21 19 18 40 40 H 1.00898 * 110.99821 * 63.95458 * 21 19 18 41 41 H 1.09002 * 109.46649 * 60.00748 * 22 14 4 42 42 H 1.08998 * 109.47455 * 300.00431 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.3121 -1.3417 0.9415 6 6 3.1488 -2.3713 -0.1467 7 1 2.2023 -2.4723 -0.6570 8 6 4.2077 -3.1842 -0.4911 9 7 5.3603 -3.0615 0.1304 10 14 4.0056 -4.4599 -1.8406 11 1 3.6450 -3.7827 -3.1121 12 1 5.2811 -5.1996 -2.0176 13 1 2.9299 -5.4121 -1.4646 14 6 2.1119 0.2298 2.3390 15 1 2.8609 0.9933 2.1289 16 6 0.7537 0.8966 2.5666 17 6 0.8496 1.8567 3.7540 18 6 1.2522 1.0783 5.0081 19 6 2.6103 0.4115 4.7805 20 1 3.3594 1.1750 4.5707 21 7 2.9966 -0.3364 5.9845 22 6 2.5146 -0.5483 3.5934 23 1 -0.3633 0.4264 0.9350 24 1 -0.3634 0.5965 -0.8368 25 1 -0.3634 -1.0230 -0.0982 26 1 1.8932 -0.5138 -0.8901 27 1 3.1262 1.4438 -0.0903 28 1 1.6048 1.9818 -0.8414 29 1 1.7522 1.9296 0.9317 30 1 4.0386 -0.5926 0.6270 31 1 3.6623 -1.8280 1.8520 32 1 6.1055 -3.6332 -0.1120 33 1 0.0048 0.1330 2.7767 34 1 0.4668 1.4508 1.6730 35 1 -0.1178 2.3320 3.9159 36 1 1.5987 2.6203 3.5442 37 1 0.5031 0.3148 5.2179 38 1 1.3209 1.7624 5.8540 39 1 3.0666 0.2758 6.7834 40 1 2.3520 -1.0918 6.1631 41 1 3.4822 -1.0233 3.4312 42 1 1.7656 -1.3118 3.8035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223153944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:04 Heat of formation + Delta-G solvation = 2.282275 kcal Electronic energy + Delta-G solvation = -18813.803216 eV Core-core repulsion = 16214.514019 eV Total energy + Delta-G solvation = -2599.289197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.55438 -36.63126 -33.23667 -32.46381 -31.46324 -29.07347 -27.54622 -26.69643 -25.87220 -22.59227 -21.61736 -21.27840 -19.67088 -18.67024 -16.15240 -15.79630 -15.56633 -14.74980 -14.70937 -14.24570 -13.68266 -13.59795 -13.38803 -13.09434 -12.50143 -12.39250 -11.97303 -11.75566 -11.55250 -11.38521 -11.28370 -10.90588 -10.76412 -10.71121 -10.60702 -10.56011 -10.35416 -10.19384 -10.03465 -9.41163 -9.38741 -8.99122 -8.49279 -8.36242 -7.08586 -5.96922 -3.97502 3.36297 3.40459 3.43283 4.45199 4.59878 4.79131 4.95358 5.11185 5.35297 5.40392 5.42135 5.58202 5.65256 5.69211 5.78212 5.81018 5.84721 5.96114 5.99588 6.08315 6.16558 6.22861 6.28860 6.31184 6.41449 6.48865 6.53998 6.62033 6.77956 6.86291 6.94840 7.01749 7.29770 7.46875 7.48507 7.57787 7.87411 8.20403 8.36264 8.66663 9.09750 9.65750 11.13873 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.007514 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.123908 B = 3725.430086 C = 4518.749483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.077 3.923 3 C -0.189 4.189 4 N -0.525 5.525 5 C 0.191 3.809 6 C -0.508 4.508 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.089 3.911 15 H 0.034 0.966 16 C -0.129 4.129 17 C -0.116 4.116 18 C -0.150 4.150 19 C 0.092 3.908 20 H 0.075 0.925 21 N -0.844 5.844 22 C -0.104 4.104 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.065 0.935 30 H -0.016 1.016 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.334 0.666 40 H 0.339 0.661 41 H 0.078 0.922 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 9.473 7.237 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.032 4.032 3 C -0.248 4.248 4 N -0.249 5.249 5 C 0.066 3.934 6 C -0.546 4.546 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.020 4.020 15 H 0.051 0.949 16 C -0.166 4.166 17 C -0.154 4.154 18 C -0.189 4.189 19 C -0.020 4.020 20 H 0.093 0.907 21 N -0.371 5.371 22 C -0.142 4.142 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.002 0.998 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.097 0.903 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.114 8.825 6.965 13.865 hybrid contribution -0.287 0.206 -0.561 0.663 sum -8.401 9.031 6.404 13.897 Atomic orbital electron populations 1.22293 0.96345 1.01567 1.01108 1.21600 0.94244 0.91715 0.95595 1.22707 1.01453 0.99106 1.01498 1.62316 1.31712 1.28116 1.02779 1.19773 0.83563 0.92813 0.97279 1.21153 0.97470 1.17656 1.18344 0.92032 1.24966 0.95271 0.97456 0.96808 1.69950 1.02183 1.39746 1.41766 0.86614 0.77204 0.81647 0.82240 1.20379 1.21401 1.20234 1.21467 0.95021 0.93593 0.91968 0.94864 1.22260 0.98335 0.98370 0.97627 1.21495 1.00637 0.98116 0.95187 1.22397 0.99065 0.99645 0.97807 1.21478 0.94076 0.95471 0.90968 0.90701 1.58875 1.57047 1.15017 1.06172 1.21586 1.03077 0.97315 0.92186 0.91479 0.94059 0.92685 0.89095 0.93020 0.93469 0.91638 0.99819 0.94220 0.92943 0.91409 0.89909 0.92488 0.92349 0.92179 0.92912 0.85393 0.84896 0.90315 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.03 37.16 0.34 -2.19 16 2 C 0.08 1.49 2.54 -67.72 -0.17 1.32 16 3 C -0.19 -3.20 7.86 37.16 0.29 -2.90 16 4 N -0.53 -11.11 4.31 -220.14 -0.95 -12.06 16 5 C 0.19 4.96 4.47 -4.97 -0.02 4.94 16 6 C -0.51 -14.29 8.19 -34.44 -0.28 -14.57 16 7 H 0.06 1.71 6.96 -52.49 -0.37 1.35 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.09 1.57 1.31 -67.71 -0.09 1.48 16 15 H 0.03 0.62 6.64 -51.93 -0.34 0.28 16 16 C -0.13 -1.85 3.04 -26.73 -0.08 -1.93 16 17 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 18 C -0.15 -1.75 5.49 -26.73 -0.15 -1.89 16 19 C 0.09 1.28 3.25 -67.73 -0.22 1.06 16 20 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 21 N -0.84 -10.77 9.25 -4.68 -0.04 -10.81 16 22 C -0.10 -1.80 4.53 -26.75 -0.12 -1.93 16 23 H 0.07 0.99 4.05 -51.93 -0.21 0.78 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 2.02 6.17 -51.93 -0.32 1.70 16 27 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.01 4.18 -51.93 -0.22 0.79 16 30 H -0.02 -0.45 7.93 -51.93 -0.41 -0.86 16 31 H 0.04 1.12 6.06 -51.93 -0.31 0.80 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.01 7.66 -51.93 -0.40 0.62 16 34 H 0.08 1.17 3.65 -51.93 -0.19 0.98 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.33 3.47 9.04 -39.30 -0.36 3.11 16 40 H 0.34 4.03 8.98 -39.29 -0.35 3.68 16 41 H 0.08 1.64 6.31 -51.93 -0.33 1.31 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -29.41 305.93 -8.59 -38.00 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.16 Total: 6.24 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -0.76 Total: -16.65 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.26 Total: -49.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.41 -8.59 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223153944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.279 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds