Wall clock time and date at job start Mon Mar 30 2020 04:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 N 1.46894 * 109.47309 * 120.00562 * 2 1 3 5 5 C 1.46905 * 110.99985 * 149.74319 * 4 2 1 6 6 C 1.50700 * 109.46823 * 298.72630 * 5 4 2 7 7 H 1.08001 * 120.00281 * 4.97104 * 6 5 4 8 8 C 1.37871 * 119.99889 * 184.96595 * 6 5 4 9 9 N 1.31517 * 120.00367 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00069 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47086 * 60.00302 * 10 8 6 12 12 H 1.48505 * 109.47069 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47165 * 300.00159 * 10 8 6 14 14 C 1.46904 * 110.99669 * 273.69075 * 4 2 1 15 15 H 1.08998 * 109.47374 * 295.43571 * 14 4 2 16 16 C 1.53006 * 109.46828 * 55.43755 * 14 4 2 17 17 C 1.53001 * 109.46821 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47482 * 299.99905 * 17 16 14 19 19 C 1.53006 * 109.47014 * 60.00213 * 18 17 16 20 20 H 1.08998 * 109.47294 * 59.99924 * 19 18 17 21 21 N 1.46905 * 109.46980 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.46987 * 175.43090 * 14 4 2 23 23 H 1.09000 * 109.46971 * 294.51316 * 1 2 3 24 24 H 1.08997 * 109.47296 * 54.51487 * 1 2 3 25 25 H 1.09006 * 109.47107 * 174.51875 * 1 2 3 26 26 H 1.09007 * 109.46528 * 240.00723 * 2 1 3 27 27 H 1.09004 * 109.46910 * 185.03916 * 3 2 1 28 28 H 1.08999 * 109.47654 * 305.03965 * 3 2 1 29 29 H 1.09003 * 109.47028 * 65.04484 * 3 2 1 30 30 H 1.08997 * 109.47243 * 58.73004 * 5 4 2 31 31 H 1.09000 * 109.46657 * 178.73431 * 5 4 2 32 32 H 0.96998 * 120.00881 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47294 * 59.99766 * 16 14 4 34 34 H 1.08998 * 109.46960 * 299.99255 * 16 14 4 35 35 H 1.08998 * 109.46891 * 179.97438 * 17 16 14 36 36 H 1.09007 * 109.46806 * 60.00127 * 17 16 14 37 37 H 1.08998 * 109.47152 * 300.00051 * 18 17 16 38 38 H 1.09001 * 109.47545 * 179.97438 * 18 17 16 39 39 H 1.00892 * 110.99698 * 299.99603 * 21 19 18 40 40 H 1.00898 * 110.99821 * 63.95458 * 21 19 18 41 41 H 1.09002 * 109.46649 * 60.00748 * 22 14 4 42 42 H 1.08998 * 109.47455 * 300.00431 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.3121 -1.3417 0.9415 6 6 3.1488 -2.3713 -0.1467 7 1 2.2023 -2.4723 -0.6570 8 6 4.2077 -3.1842 -0.4911 9 7 5.3603 -3.0615 0.1304 10 14 4.0056 -4.4599 -1.8406 11 1 3.6450 -3.7827 -3.1121 12 1 5.2811 -5.1996 -2.0176 13 1 2.9299 -5.4121 -1.4646 14 6 2.1119 0.2298 2.3390 15 1 2.8609 0.9933 2.1289 16 6 0.7537 0.8966 2.5666 17 6 0.8496 1.8567 3.7540 18 6 1.2522 1.0783 5.0081 19 6 2.6103 0.4115 4.7805 20 1 3.3594 1.1750 4.5707 21 7 2.9966 -0.3364 5.9845 22 6 2.5146 -0.5483 3.5934 23 1 -0.3633 0.4264 0.9350 24 1 -0.3634 0.5965 -0.8368 25 1 -0.3634 -1.0230 -0.0982 26 1 1.8932 -0.5138 -0.8901 27 1 3.1262 1.4438 -0.0903 28 1 1.6048 1.9818 -0.8414 29 1 1.7522 1.9296 0.9317 30 1 4.0386 -0.5926 0.6270 31 1 3.6623 -1.8280 1.8520 32 1 6.1055 -3.6332 -0.1120 33 1 0.0048 0.1330 2.7767 34 1 0.4668 1.4508 1.6730 35 1 -0.1178 2.3320 3.9159 36 1 1.5987 2.6203 3.5442 37 1 0.5031 0.3148 5.2179 38 1 1.3209 1.7624 5.8540 39 1 3.0666 0.2758 6.7834 40 1 2.3520 -1.0918 6.1631 41 1 3.4822 -1.0233 3.4312 42 1 1.7656 -1.3118 3.8035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223153944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:03 Heat of formation + Delta-G solvation = -18.743869 kcal Electronic energy + Delta-G solvation = -18814.714978 eV Core-core repulsion = 16214.514019 eV Total energy + Delta-G solvation = -2600.200959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95911 -37.97632 -35.11526 -33.85137 -33.04426 -30.65257 -28.75610 -28.08834 -27.75345 -24.37692 -23.05868 -22.55246 -20.88249 -20.24235 -18.29829 -17.10962 -16.95890 -16.53450 -16.09458 -15.66063 -15.19106 -14.90857 -14.67629 -14.52351 -14.12981 -13.77687 -13.58172 -13.37357 -12.89141 -12.83619 -12.67958 -12.62154 -12.58362 -12.10614 -12.08499 -12.01708 -11.84506 -11.64134 -11.46343 -11.26776 -10.99556 -10.64888 -10.49884 -9.50939 -8.85481 -8.19218 -6.28676 1.38298 1.41978 1.49745 2.39607 3.11173 3.23869 3.62118 3.83965 3.98383 4.17166 4.23662 4.26320 4.31662 4.41366 4.52845 4.57762 4.60659 4.64222 4.75142 4.84417 4.88540 4.99762 5.04798 5.11725 5.14514 5.20880 5.26671 5.27856 5.30495 5.32894 5.43090 5.48703 5.62443 5.63919 5.69519 6.11218 6.28734 6.49597 6.67765 6.79649 6.89886 7.40226 8.91815 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.007514 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.123908 B = 3725.430086 C = 4518.749483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.180 4.180 4 N -0.531 5.531 5 C 0.211 3.789 6 C -0.523 4.523 7 H 0.062 0.938 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.087 3.913 15 H 0.021 0.979 16 C -0.120 4.120 17 C -0.112 4.112 18 C -0.140 4.140 19 C 0.099 3.901 20 H 0.066 0.934 21 N -0.855 5.855 22 C -0.097 4.097 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.021 0.979 28 H 0.073 0.927 29 H 0.085 0.915 30 H -0.052 1.052 31 H 0.009 0.991 32 H 0.263 0.737 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.351 0.649 40 H 0.344 0.656 41 H 0.030 0.970 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 10.723 7.540 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.238 4.238 4 N -0.255 5.255 5 C 0.085 3.915 6 C -0.561 4.561 7 H 0.080 0.920 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.791 3.209 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.193 1.193 14 C -0.022 4.022 15 H 0.038 0.962 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.180 4.180 19 C -0.013 4.013 20 H 0.084 0.916 21 N -0.385 5.385 22 C -0.136 4.136 23 H 0.105 0.895 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.092 0.908 29 H 0.104 0.896 30 H -0.035 1.035 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.049 0.951 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.568 10.097 7.279 16.328 hybrid contribution 0.506 -0.173 -0.626 0.824 sum -10.061 9.924 6.653 15.620 Atomic orbital electron populations 1.22210 0.93218 1.01525 1.03334 1.21670 0.96581 0.92433 0.93152 1.22619 0.99597 0.97901 1.03718 1.62295 1.28417 1.30017 1.04787 1.19327 0.85237 0.91802 0.95180 1.21484 0.97571 1.18176 1.18875 0.92011 1.25916 0.94799 0.99717 0.99319 1.70097 1.03074 1.40882 1.43461 0.85475 0.77433 0.78764 0.79181 1.19229 1.20824 1.19342 1.21600 0.97294 0.92740 0.90530 0.96150 1.22173 0.95339 0.98672 0.99483 1.21502 1.02387 0.97436 0.93725 1.22307 0.96980 0.99969 0.98723 1.21305 0.95805 0.94311 0.89836 0.91552 1.58777 1.57571 1.15673 1.06510 1.21483 1.00018 0.97932 0.94137 0.89514 0.91424 0.94023 0.92816 0.95929 0.90813 0.89647 1.03464 0.97300 0.92813 0.91460 0.89035 0.89598 0.91988 0.91779 0.90358 0.83507 0.84286 0.95111 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 9.03 71.98 0.65 -3.78 16 2 C 0.07 2.72 2.54 44.92 0.11 2.84 16 3 C -0.18 -5.97 7.86 71.98 0.57 -5.41 16 4 N -0.53 -23.31 4.31 -850.40 -3.66 -26.98 16 5 C 0.21 11.74 4.47 85.56 0.38 12.13 16 6 C -0.52 -30.74 8.19 25.60 0.21 -30.53 16 7 H 0.06 3.55 6.96 -2.91 -0.02 3.53 16 8 C 0.00 0.02 5.46 84.65 0.46 0.48 16 9 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 10 Si 0.97 45.75 29.54 68.60 2.03 47.77 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.09 3.14 1.31 44.92 0.06 3.20 16 15 H 0.02 0.79 6.64 -2.39 -0.02 0.78 16 16 C -0.12 -3.15 3.04 30.60 0.09 -3.05 16 17 C -0.11 -2.26 5.92 30.59 0.18 -2.07 16 18 C -0.14 -2.84 5.49 30.59 0.17 -2.67 16 19 C 0.10 2.70 3.25 44.90 0.15 2.85 16 20 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 21 N -0.86 -21.24 9.25 -168.72 -1.56 -22.80 16 22 C -0.10 -3.53 4.53 30.58 0.14 -3.39 16 23 H 0.09 2.29 4.05 -2.39 -0.01 2.28 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.05 2.47 6.17 -2.38 -0.01 2.45 16 27 H 0.02 0.85 7.93 -2.39 -0.02 0.83 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 2.47 4.18 -2.39 -0.01 2.46 16 30 H -0.05 -3.20 7.93 -2.39 -0.02 -3.22 16 31 H 0.01 0.55 6.06 -2.39 -0.01 0.53 16 32 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.07 1.82 7.66 -2.39 -0.02 1.80 16 34 H 0.09 2.26 3.65 -2.39 -0.01 2.25 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.35 6.67 9.04 -89.70 -0.81 5.86 16 40 H 0.34 7.94 8.98 -89.70 -0.81 7.13 16 41 H 0.03 1.38 6.31 -2.39 -0.02 1.37 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -67.72 305.93 -0.35 -68.07 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.61 Total: 21.55 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 3.17 Total: -29.41 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -4.94 Total: -107.97 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -67.72 -0.35 -68.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223153944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.322 kcal (2) G-P(sol) polarization free energy of solvation -67.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds