Wall clock time and date at job start Mon Mar 30 2020 04:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46596 * 2 1 4 4 N 1.46901 * 109.46611 * 184.62328 * 3 2 1 5 5 C 1.46904 * 111.00171 * 199.77064 * 4 3 2 6 6 H 1.09006 * 109.46830 * 292.68100 * 5 4 3 7 7 C 1.52994 * 109.47494 * 172.68077 * 5 4 3 8 8 C 1.50702 * 109.47046 * 52.67498 * 5 4 3 9 9 H 1.07996 * 119.99886 * 0.02562 * 8 5 4 10 10 C 1.37882 * 119.99912 * 180.02562 * 8 5 4 11 11 N 1.31515 * 119.99629 * 359.97438 * 10 8 5 12 12 Si 1.86797 * 120.00006 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.47204 * 89.99570 * 12 10 8 14 14 H 1.48492 * 109.47236 * 209.99876 * 12 10 8 15 15 H 1.48509 * 109.46851 * 329.99838 * 12 10 8 16 16 C 1.46899 * 110.99935 * 75.81954 * 4 3 2 17 17 H 1.08998 * 109.49851 * 327.72782 * 16 4 3 18 18 C 1.53211 * 109.49144 * 207.63210 * 16 4 3 19 19 C 1.53118 * 109.11425 * 182.41900 * 18 16 4 20 20 C 1.53032 * 109.31360 * 57.63876 * 19 18 16 21 21 N 1.46854 * 109.52350 * 300.79960 * 20 19 18 22 22 C 1.46850 * 111.19506 * 61.73741 * 21 20 19 23 23 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46808 * 299.99878 * 1 2 3 25 25 H 1.08992 * 109.47191 * 59.99654 * 1 2 3 26 26 H 1.08993 * 109.46689 * 240.00568 * 2 1 3 27 27 H 1.08997 * 109.47327 * 119.99885 * 2 1 3 28 28 H 1.09000 * 109.46939 * 64.62782 * 3 2 1 29 29 H 1.08994 * 109.47560 * 304.62033 * 3 2 1 30 30 H 1.09000 * 109.46556 * 316.04691 * 7 5 4 31 31 H 1.08993 * 109.47640 * 76.04497 * 7 5 4 32 32 H 1.09005 * 109.47226 * 196.05127 * 7 5 4 33 33 H 0.97004 * 119.99408 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.57052 * 62.51286 * 18 16 4 35 35 H 1.08999 * 109.51300 * 302.29458 * 18 16 4 36 36 H 1.09000 * 109.50531 * 297.67383 * 19 18 16 37 37 H 1.09003 * 109.50312 * 177.60226 * 19 18 16 38 38 H 1.09006 * 109.46172 * 60.81030 * 20 19 18 39 39 H 1.08998 * 109.46944 * 180.78403 * 20 19 18 40 40 H 1.00893 * 110.99751 * 297.64413 * 21 20 19 41 41 H 1.09003 * 109.46063 * 58.27966 * 22 21 20 42 42 H 1.09000 * 109.46003 * 178.24858 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5047 1.4441 -0.1116 5 6 4.0662 2.7223 0.3454 6 1 3.7725 3.5149 -0.3428 7 6 5.5924 2.6230 0.3875 8 6 3.5450 3.0356 1.7243 9 1 2.8649 2.3532 2.2124 10 6 3.9362 4.1934 2.3626 11 7 4.7648 5.0240 1.7683 12 14 3.2907 4.5814 4.0720 13 1 4.2064 4.0057 5.0894 14 1 3.2154 6.0537 4.2503 15 1 1.9368 3.9932 4.2351 16 6 3.9282 1.1445 -1.4860 17 1 3.2110 0.4660 -1.9480 18 6 5.3124 0.4882 -1.4628 19 6 5.7714 0.2349 -2.9014 20 6 5.7871 1.5591 -3.6682 21 7 4.4409 2.1459 -3.6620 22 6 3.9974 2.4423 -2.2938 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7458 1.9318 0.9286 29 1 1.6106 1.9797 -0.8456 30 1 5.8823 1.6728 0.8359 31 1 5.9885 2.6822 -0.6262 32 1 5.9936 3.4432 0.9828 33 1 5.0403 5.8384 2.2175 34 1 5.2586 -0.4587 -0.9256 35 1 6.0211 1.1505 -0.9655 36 1 5.0838 -0.4582 -3.3861 37 1 6.7739 -0.1931 -2.8936 38 1 6.4853 2.2469 -3.1910 39 1 6.1002 1.3796 -4.6968 40 1 3.7822 1.5444 -4.1333 41 1 4.7039 3.1260 -1.8231 42 1 3.0105 2.9042 -2.3240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223390190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:26 Heat of formation + Delta-G solvation = 5.106820 kcal Electronic energy + Delta-G solvation = -18983.319649 eV Core-core repulsion = 16384.152934 eV Total energy + Delta-G solvation = -2599.166715 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.38186 -36.15608 -33.62740 -32.29317 -31.20259 -29.25454 -28.58685 -25.10239 -24.37858 -23.28928 -22.27816 -20.46410 -20.08013 -18.84590 -16.42487 -15.64431 -15.39947 -14.50824 -14.39221 -14.32875 -14.10214 -13.66121 -13.06365 -12.68497 -12.40565 -12.35535 -11.90246 -11.76680 -11.45035 -11.30765 -11.04235 -10.94590 -10.84575 -10.72090 -10.70162 -10.44411 -10.14880 -9.98726 -9.89908 -9.76153 -9.34525 -8.85209 -8.35741 -8.24902 -6.93426 -6.00468 -4.05653 3.30293 3.37079 3.39651 4.39945 4.57219 4.92913 5.16896 5.30288 5.34885 5.40597 5.48023 5.54058 5.61654 5.76464 5.83396 5.88309 5.99533 6.09027 6.12068 6.23045 6.27432 6.31426 6.39665 6.48366 6.50593 6.68990 6.71646 6.83319 6.85802 6.95420 7.06687 7.18978 7.30993 7.52541 7.67587 7.80379 7.83567 8.25128 8.37182 8.64121 9.01671 9.59047 11.05028 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.008962 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.988136 B = 3123.670042 C = 4072.771847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.056 3.944 4 N -0.527 5.527 5 C 0.208 3.792 6 H 0.008 0.992 7 C -0.137 4.137 8 C -0.505 4.505 9 H 0.063 0.937 10 C 0.059 3.941 11 N -0.890 5.890 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.275 1.275 16 C 0.057 3.943 17 H 0.057 0.943 18 C -0.128 4.128 19 C -0.155 4.155 20 C 0.057 3.943 21 N -0.685 5.685 22 C 0.023 3.977 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.016 0.984 30 H 0.033 0.967 31 H 0.017 0.983 32 H 0.084 0.916 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.330 0.670 41 H 0.095 0.905 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 -8.000 -7.520 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.072 4.072 4 N -0.251 5.251 5 C 0.103 3.897 6 H 0.026 0.974 7 C -0.194 4.194 8 C -0.544 4.544 9 H 0.081 0.919 10 C -0.142 4.142 11 N -0.529 5.529 12 Si 0.721 3.279 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.200 1.200 16 C -0.054 4.054 17 H 0.076 0.924 18 C -0.166 4.166 19 C -0.195 4.195 20 C -0.073 4.073 21 N -0.313 5.313 22 C -0.107 4.107 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.113 0.887 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.167 -7.514 -7.288 10.532 hybrid contribution -0.814 -0.097 0.749 1.111 sum -1.981 -7.611 -6.539 10.228 Atomic orbital electron populations 1.21736 0.96728 1.00650 1.01542 1.21534 0.94215 0.98266 1.01510 1.22120 0.88595 0.94747 1.01760 1.62251 1.08064 1.36873 1.17905 1.19294 0.91740 0.83733 0.94977 0.97415 1.22089 0.98139 1.01312 0.97878 1.21220 1.27257 1.04976 1.00917 0.91882 1.24921 0.95239 0.96239 0.97830 1.69905 1.33570 1.11727 1.37735 0.86572 0.79296 0.77279 0.84703 1.20735 1.21356 1.19980 1.22272 0.96275 0.96116 0.90726 0.92445 1.22091 0.97849 1.01643 0.94993 1.22289 1.01085 0.98466 0.97647 1.21994 0.91764 0.94168 0.99346 1.60733 1.03640 1.49212 1.17697 1.22898 1.01622 0.98692 0.87462 0.93454 0.92741 0.93334 0.93243 0.91831 0.88905 0.96584 0.94832 0.96440 0.89705 0.93005 0.92299 0.88954 0.92912 0.92005 0.90966 0.91547 0.85363 0.88662 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.89 6.08 -26.73 -0.16 -2.05 16 3 C 0.06 1.09 4.66 -3.82 -0.02 1.07 16 4 N -0.53 -10.96 4.22 -219.95 -0.93 -11.89 16 5 C 0.21 5.06 1.52 -68.86 -0.10 4.95 16 6 H 0.01 0.22 6.06 -51.93 -0.31 -0.09 16 7 C -0.14 -3.24 7.20 37.15 0.27 -2.97 16 8 C -0.51 -13.49 7.66 -34.44 -0.26 -13.75 16 9 H 0.06 1.69 6.34 -52.49 -0.33 1.36 16 10 C 0.06 1.60 5.22 -17.82 -0.09 1.51 16 11 N -0.89 -25.00 11.34 55.43 0.63 -24.37 16 12 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 16 C 0.06 1.02 2.06 -67.59 -0.14 0.88 16 17 H 0.06 0.98 6.44 -51.93 -0.33 0.65 16 18 C -0.13 -2.14 5.07 -26.56 -0.13 -2.27 16 19 C -0.16 -2.10 6.07 -26.65 -0.16 -2.27 16 20 C 0.06 0.79 6.55 -3.83 -0.03 0.77 16 21 N -0.69 -10.53 6.87 -113.81 -0.78 -11.31 16 22 C 0.02 0.43 4.53 -3.84 -0.02 0.41 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.77 6.74 -51.93 -0.35 0.42 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 2.01 5.55 -51.93 -0.29 1.73 16 29 H 0.02 0.31 7.39 -51.93 -0.38 -0.08 16 30 H 0.03 0.77 7.48 -51.93 -0.39 0.38 16 31 H 0.02 0.37 4.74 -51.93 -0.25 0.13 16 32 H 0.08 2.25 5.82 -51.93 -0.30 1.95 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.71 3.88 -51.93 -0.20 1.51 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.33 4.50 8.86 -39.30 -0.35 4.15 16 41 H 0.10 2.01 4.72 -51.93 -0.24 1.77 16 42 H 0.06 1.24 7.53 -51.93 -0.39 0.85 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -26.95 302.98 -9.09 -36.04 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.07 Total: 6.25 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.48 Total: -15.39 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -1.08 Total: -47.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.95 -9.09 -36.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223390190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.142 kcal (2) G-P(sol) polarization free energy of solvation -26.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds