Wall clock time and date at job start Mon Mar 30 2020 04:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46596 * 2 1 4 4 N 1.46901 * 109.46611 * 184.62328 * 3 2 1 5 5 C 1.46904 * 111.00171 * 199.77064 * 4 3 2 6 6 H 1.09006 * 109.46830 * 292.68100 * 5 4 3 7 7 C 1.52994 * 109.47494 * 172.68077 * 5 4 3 8 8 C 1.50702 * 109.47046 * 52.67498 * 5 4 3 9 9 H 1.07996 * 119.99886 * 0.02562 * 8 5 4 10 10 C 1.37882 * 119.99912 * 180.02562 * 8 5 4 11 11 N 1.31515 * 119.99629 * 359.97438 * 10 8 5 12 12 Si 1.86797 * 120.00006 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.47204 * 89.99570 * 12 10 8 14 14 H 1.48492 * 109.47236 * 209.99876 * 12 10 8 15 15 H 1.48509 * 109.46851 * 329.99838 * 12 10 8 16 16 C 1.46899 * 110.99935 * 75.81954 * 4 3 2 17 17 H 1.08998 * 109.49851 * 327.72782 * 16 4 3 18 18 C 1.53211 * 109.49144 * 207.63210 * 16 4 3 19 19 C 1.53118 * 109.11425 * 182.41900 * 18 16 4 20 20 C 1.53032 * 109.31360 * 57.63876 * 19 18 16 21 21 N 1.46854 * 109.52350 * 300.79960 * 20 19 18 22 22 C 1.46850 * 111.19506 * 61.73741 * 21 20 19 23 23 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46808 * 299.99878 * 1 2 3 25 25 H 1.08992 * 109.47191 * 59.99654 * 1 2 3 26 26 H 1.08993 * 109.46689 * 240.00568 * 2 1 3 27 27 H 1.08997 * 109.47327 * 119.99885 * 2 1 3 28 28 H 1.09000 * 109.46939 * 64.62782 * 3 2 1 29 29 H 1.08994 * 109.47560 * 304.62033 * 3 2 1 30 30 H 1.09000 * 109.46556 * 316.04691 * 7 5 4 31 31 H 1.08993 * 109.47640 * 76.04497 * 7 5 4 32 32 H 1.09005 * 109.47226 * 196.05127 * 7 5 4 33 33 H 0.97004 * 119.99408 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.57052 * 62.51286 * 18 16 4 35 35 H 1.08999 * 109.51300 * 302.29458 * 18 16 4 36 36 H 1.09000 * 109.50531 * 297.67383 * 19 18 16 37 37 H 1.09003 * 109.50312 * 177.60226 * 19 18 16 38 38 H 1.09006 * 109.46172 * 60.81030 * 20 19 18 39 39 H 1.08998 * 109.46944 * 180.78403 * 20 19 18 40 40 H 1.00893 * 110.99751 * 297.64413 * 21 20 19 41 41 H 1.09003 * 109.46063 * 58.27966 * 22 21 20 42 42 H 1.09000 * 109.46003 * 178.24858 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5047 1.4441 -0.1116 5 6 4.0662 2.7223 0.3454 6 1 3.7725 3.5149 -0.3428 7 6 5.5924 2.6230 0.3875 8 6 3.5450 3.0356 1.7243 9 1 2.8649 2.3532 2.2124 10 6 3.9362 4.1934 2.3626 11 7 4.7648 5.0240 1.7683 12 14 3.2907 4.5814 4.0720 13 1 4.2064 4.0057 5.0894 14 1 3.2154 6.0537 4.2503 15 1 1.9368 3.9932 4.2351 16 6 3.9282 1.1445 -1.4860 17 1 3.2110 0.4660 -1.9480 18 6 5.3124 0.4882 -1.4628 19 6 5.7714 0.2349 -2.9014 20 6 5.7871 1.5591 -3.6682 21 7 4.4409 2.1459 -3.6620 22 6 3.9974 2.4423 -2.2938 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7458 1.9318 0.9286 29 1 1.6106 1.9797 -0.8456 30 1 5.8823 1.6728 0.8359 31 1 5.9885 2.6822 -0.6262 32 1 5.9936 3.4432 0.9828 33 1 5.0403 5.8384 2.2175 34 1 5.2586 -0.4587 -0.9256 35 1 6.0211 1.1505 -0.9655 36 1 5.0838 -0.4582 -3.3861 37 1 6.7739 -0.1931 -2.8936 38 1 6.4853 2.2469 -3.1910 39 1 6.1002 1.3796 -4.6968 40 1 3.7822 1.5444 -4.1333 41 1 4.7039 3.1260 -1.8231 42 1 3.0105 2.9042 -2.3240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223390190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:25 Heat of formation + Delta-G solvation = -12.850964 kcal Electronic energy + Delta-G solvation = -18984.098357 eV Core-core repulsion = 16384.152934 eV Total energy + Delta-G solvation = -2599.945423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87374 -37.62125 -35.34613 -33.94695 -32.49163 -31.01323 -30.07681 -27.09648 -25.81136 -24.68426 -23.70724 -21.92165 -21.52956 -20.49624 -18.36700 -17.14478 -16.95013 -16.14721 -16.04189 -15.66407 -15.56930 -15.09387 -14.47807 -14.22148 -13.96508 -13.73909 -13.41657 -13.25864 -13.03580 -12.77587 -12.69602 -12.66226 -12.31886 -12.25968 -12.20723 -12.02540 -11.83575 -11.58923 -11.47167 -11.28698 -10.98611 -10.78836 -10.32324 -9.67215 -8.54829 -8.08788 -6.20467 1.40743 1.41863 1.51227 2.42324 3.14845 3.24196 3.54013 3.84158 4.08033 4.17208 4.17973 4.23726 4.38625 4.42196 4.52436 4.60181 4.68675 4.72098 4.84113 4.92900 4.98047 5.01792 5.04885 5.08094 5.12949 5.17211 5.19690 5.26849 5.32322 5.42916 5.45187 5.48070 5.63199 5.73463 5.91538 6.01946 6.32413 6.46778 6.54732 6.84082 6.97734 7.48079 8.95609 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.008962 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.988136 B = 3123.670042 C = 4072.771847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.057 3.943 4 N -0.533 5.533 5 C 0.218 3.782 6 H -0.023 1.023 7 C -0.119 4.119 8 C -0.519 4.519 9 H 0.058 0.942 10 C 0.012 3.988 11 N -0.917 5.917 12 Si 0.954 3.046 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.269 1.269 16 C 0.060 3.940 17 H 0.074 0.926 18 C -0.127 4.127 19 C -0.144 4.144 20 C 0.056 3.944 21 N -0.686 5.686 22 C 0.038 3.962 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.345 0.655 41 H 0.060 0.940 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -9.837 -8.495 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.071 4.071 4 N -0.257 5.257 5 C 0.111 3.889 6 H -0.006 1.006 7 C -0.176 4.176 8 C -0.557 4.557 9 H 0.076 0.924 10 C -0.187 4.187 11 N -0.557 5.557 12 Si 0.780 3.220 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.194 1.194 16 C -0.051 4.051 17 H 0.092 0.908 18 C -0.164 4.164 19 C -0.184 4.184 20 C -0.073 4.073 21 N -0.315 5.315 22 C -0.093 4.093 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.163 0.837 41 H 0.079 0.921 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.701 -9.372 -8.278 12.620 hybrid contribution -0.650 0.465 0.990 1.272 sum -2.351 -8.907 -7.288 11.746 Atomic orbital electron populations 1.21700 0.94590 1.02226 1.01638 1.21434 0.95998 0.95455 1.01590 1.22117 0.87890 0.96983 1.00122 1.62243 1.08881 1.34462 1.20118 1.19021 0.91986 0.84546 0.93361 1.00563 1.21874 0.97824 0.99810 0.98128 1.21520 1.27113 1.05021 1.02047 0.92414 1.25655 0.95520 0.96216 1.01295 1.70036 1.34550 1.12021 1.39102 0.85622 0.78896 0.77015 0.80502 1.20339 1.21096 1.19359 1.22352 0.97473 0.96255 0.88980 0.90766 1.22028 0.96343 1.00764 0.97309 1.22208 1.02519 0.98556 0.95107 1.22073 0.90352 0.93850 1.01048 1.60651 1.04788 1.50369 1.15711 1.22554 0.99730 0.97999 0.89043 0.91102 0.93283 0.92677 0.92127 0.92649 0.91763 0.96791 0.94822 0.95013 0.92786 0.93091 0.92299 0.91261 0.91054 0.90149 0.92746 0.88531 0.83703 0.92137 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.89 16 2 C -0.11 -3.28 6.08 30.60 0.19 -3.09 16 3 C 0.06 2.22 4.66 86.30 0.40 2.62 16 4 N -0.53 -22.37 4.22 -849.79 -3.59 -25.95 16 5 C 0.22 10.93 1.52 44.17 0.07 10.99 16 6 H -0.02 -1.29 6.06 -2.38 -0.01 -1.30 16 7 C -0.12 -5.81 7.20 71.98 0.52 -5.29 16 8 C -0.52 -28.47 7.66 25.60 0.20 -28.28 16 9 H 0.06 3.17 6.34 -2.91 -0.02 3.15 16 10 C 0.01 0.65 5.22 84.66 0.44 1.09 16 11 N -0.92 -53.08 11.34 21.45 0.24 -52.84 16 12 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 16 C 0.06 2.09 2.06 45.00 0.09 2.18 16 17 H 0.07 2.36 6.44 -2.39 -0.02 2.34 16 18 C -0.13 -4.04 5.07 30.70 0.16 -3.88 16 19 C -0.14 -3.46 6.07 30.64 0.19 -3.27 16 20 C 0.06 1.42 6.55 86.32 0.57 1.99 16 21 N -0.69 -19.95 6.87 -514.00 -3.53 -23.48 16 22 C 0.04 1.37 4.53 86.32 0.39 1.77 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.73 6.74 -2.39 -0.02 1.71 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 2.86 5.55 -2.39 -0.01 2.85 16 29 H 0.01 0.54 7.39 -2.39 -0.02 0.52 16 30 H 0.03 1.59 7.48 -2.39 -0.02 1.57 16 31 H 0.03 1.43 4.74 -2.39 -0.01 1.41 16 32 H 0.05 2.98 5.82 -2.38 -0.01 2.96 16 33 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.54 3.88 -2.39 -0.01 2.53 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.34 8.45 8.86 -89.70 -0.79 7.65 16 41 H 0.06 2.64 4.72 -2.39 -0.01 2.63 16 42 H 0.05 1.91 7.53 -2.39 -0.02 1.89 16 Total: -1.00 -59.30 302.98 -0.73 -60.03 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.20 Total: 22.27 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 3.92 Total: -26.07 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -6.87 Total: -102.28 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -59.30 -0.73 -60.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223390190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.178 kcal (2) G-P(sol) polarization free energy of solvation -59.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds