Wall clock time and date at job start Mon Mar 30 2020 03:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 H 1.09001 * 109.47192 * 305.00051 * 3 2 1 5 5 C 1.50702 * 109.47514 * 185.00152 * 3 2 1 6 6 H 1.07999 * 120.00325 * 239.99975 * 5 3 2 7 7 C 1.37881 * 119.99884 * 59.99730 * 5 3 2 8 8 N 1.31509 * 120.00070 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99890 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46992 * 90.00127 * 9 7 5 11 11 H 1.48504 * 109.47014 * 210.00108 * 9 7 5 12 12 H 1.48498 * 109.47192 * 330.00147 * 9 7 5 13 13 N 1.46896 * 109.47239 * 65.00111 * 3 2 1 14 14 C 1.48561 * 110.99993 * 69.87431 * 13 3 2 15 15 C 1.54383 * 104.69710 * 159.10299 * 14 13 3 16 16 H 1.09002 * 110.32782 * 95.08631 * 15 14 13 17 17 C 1.53002 * 110.31928 * 217.18994 * 15 14 13 18 18 C 1.54256 * 105.06101 * 336.08474 * 15 14 13 19 19 H 1.09000 * 110.32251 * 118.89847 * 18 15 14 20 20 N 1.46901 * 110.32660 * 241.10705 * 18 15 14 21 21 C 1.46896 * 111.00117 * 157.87239 * 20 18 15 22 22 C 1.46900 * 110.99856 * 281.82535 * 20 18 15 23 23 C 1.48859 * 111.13655 * 185.19645 * 13 3 2 24 24 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47407 * 300.00108 * 1 2 3 26 26 H 1.09008 * 109.47272 * 59.99852 * 1 2 3 27 27 H 1.09003 * 109.47407 * 239.99892 * 2 1 3 28 28 H 1.08995 * 109.47364 * 119.99984 * 2 1 3 29 29 H 0.96997 * 120.00525 * 179.97438 * 8 7 5 30 30 H 1.08995 * 110.41328 * 40.26521 * 14 13 3 31 31 H 1.08997 * 110.40781 * 277.93599 * 14 13 3 32 32 H 1.09004 * 109.46966 * 70.48736 * 17 15 14 33 33 H 1.09003 * 109.47016 * 190.48197 * 17 15 14 34 34 H 1.08993 * 109.47535 * 310.48511 * 17 15 14 35 35 H 1.08998 * 109.47626 * 53.07458 * 21 20 18 36 36 H 1.09000 * 109.47164 * 173.07799 * 21 20 18 37 37 H 1.09003 * 109.46770 * 293.07820 * 21 20 18 38 38 H 1.09000 * 109.47196 * 43.71609 * 22 20 18 39 39 H 1.09003 * 109.47007 * 163.71379 * 22 20 18 40 40 H 1.09007 * 109.47014 * 283.71185 * 22 20 18 41 41 H 1.08998 * 110.39581 * 82.21221 * 23 13 3 42 42 H 1.09001 * 110.49142 * 319.84979 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8801 -1.3812 10 1 6.5538 -0.3520 -0.7599 11 1 6.3834 0.9215 -2.8166 12 1 6.5575 2.0720 -0.6890 13 7 1.6514 2.0992 1.2552 14 6 2.4099 1.5420 2.4046 15 6 2.3214 2.6298 3.4966 16 1 1.4959 2.4179 4.1761 17 6 3.6382 2.7133 4.2713 18 6 2.0651 3.9450 2.7323 19 1 1.1126 4.3796 3.0356 20 7 3.1597 4.8953 2.9706 21 6 3.2290 5.8980 1.8993 22 6 3.0226 5.5375 4.2846 23 6 2.0202 3.5414 1.2429 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8291 -0.0604 -2.9503 30 1 3.4489 1.3672 2.1255 31 1 1.9494 0.6170 2.7514 32 1 4.4099 3.1409 3.6311 33 1 3.5036 3.3448 5.1495 34 1 3.9391 1.7139 4.5851 35 1 2.2520 6.3649 1.7749 36 1 3.9646 6.6587 2.1606 37 1 3.5217 5.4143 0.9674 38 1 2.7555 4.7878 5.0294 39 1 3.9681 6.0039 4.5615 40 1 2.2425 6.2975 4.2380 41 1 1.2645 4.1222 0.7143 42 1 2.9977 3.6813 0.7814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226073266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:47 Heat of formation + Delta-G solvation = 17.910218 kcal Electronic energy + Delta-G solvation = -19009.736453 eV Core-core repulsion = 16411.124935 eV Total energy + Delta-G solvation = -2598.611518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.27265 -36.28138 -33.65578 -31.77449 -30.96066 -28.39875 -26.97442 -26.31313 -25.04751 -23.45616 -22.27299 -20.70071 -19.03301 -18.58910 -16.50336 -15.67336 -15.38982 -14.56663 -14.50708 -14.32729 -13.62265 -13.09399 -12.86389 -12.45564 -12.21770 -12.18194 -11.99418 -11.87067 -11.71072 -11.38558 -11.04919 -11.00376 -10.86048 -10.55221 -10.52906 -10.34084 -10.06889 -9.89757 -9.81111 -9.60545 -9.37370 -9.03817 -8.32650 -7.98216 -7.15587 -5.95871 -4.07873 3.29320 3.36612 3.40399 4.20252 4.42913 5.13406 5.25114 5.28417 5.30933 5.43159 5.49721 5.62163 5.68457 5.77503 5.88427 5.98525 6.11147 6.14320 6.20581 6.31740 6.39904 6.48350 6.51203 6.60870 6.70338 6.72138 6.80644 6.87912 7.07509 7.10567 7.20246 7.31958 7.33419 7.47085 7.63930 7.79324 8.00515 8.18717 8.25537 8.48281 9.02742 9.58823 11.03982 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.009106 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.677250 B = 3074.017262 C = 3723.431876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.204 3.796 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.510 5.510 14 C 0.042 3.958 15 C -0.088 4.088 16 H 0.061 0.939 17 C -0.134 4.134 18 C 0.082 3.918 19 H 0.041 0.959 20 N -0.533 5.533 21 C 0.021 3.979 22 C 0.020 3.980 23 C 0.041 3.959 24 H 0.024 0.976 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.022 0.978 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.019 0.981 41 H 0.058 0.942 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 6.800 9.595 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C 0.097 3.903 4 H 0.054 0.946 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.233 5.233 14 C -0.087 4.087 15 C -0.108 4.108 16 H 0.080 0.920 17 C -0.192 4.192 18 C -0.027 4.027 19 H 0.059 0.941 20 N -0.257 5.257 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.088 4.088 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.076 0.924 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.794 6.360 9.435 11.520 hybrid contribution 1.117 0.538 -0.323 1.281 sum -0.678 6.898 9.113 11.449 Atomic orbital electron populations 1.21712 0.98968 0.98368 1.00507 1.21525 0.92143 0.99090 1.01853 1.19362 0.93265 0.91350 0.86357 0.94615 1.21754 0.92767 1.37977 1.05442 0.91912 1.24909 0.97723 0.95109 0.95691 1.69878 1.34746 1.38402 1.09425 0.86702 0.86365 0.78483 0.77136 1.20730 1.21326 1.19898 1.65791 1.51196 1.00980 1.05366 1.23073 0.99362 0.95784 0.90444 1.21912 0.97493 0.94555 0.96824 0.92049 1.21823 0.98075 0.99934 0.99345 1.22463 0.90673 0.92513 0.97051 0.94136 1.62131 1.45065 1.16592 1.01941 1.22433 0.99523 0.94549 0.96171 1.22574 1.00193 0.98081 0.91975 1.23118 1.00604 0.91952 0.93147 0.95644 0.93404 0.94309 0.89041 0.95086 0.92973 0.91369 0.92187 0.90650 0.93602 0.94047 0.95973 0.92187 0.90376 0.90910 0.91890 0.96280 0.92372 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.80 37.15 0.36 -2.51 16 2 C -0.11 -2.58 5.25 -26.74 -0.14 -2.72 16 3 C 0.20 5.02 1.76 -68.87 -0.12 4.90 16 4 H 0.04 0.99 8.13 -51.93 -0.42 0.56 16 5 C -0.54 -14.29 6.58 -34.44 -0.23 -14.51 16 6 H 0.06 1.68 5.65 -52.49 -0.30 1.38 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.89 11.29 55.43 0.63 -24.27 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.51 -10.90 4.82 -223.15 -1.08 -11.98 16 14 C 0.04 0.83 5.01 -2.18 -0.01 0.82 16 15 C -0.09 -1.46 3.45 -89.24 -0.31 -1.77 16 16 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.13 -2.02 7.84 37.16 0.29 -1.73 16 18 C 0.08 1.35 2.85 -66.33 -0.19 1.16 16 19 H 0.04 0.66 8.03 -51.93 -0.42 0.24 16 20 N -0.53 -8.00 3.29 -241.51 -0.79 -8.79 16 21 C 0.02 0.30 8.80 60.06 0.53 0.83 16 22 C 0.02 0.24 8.78 60.06 0.53 0.77 16 23 C 0.04 0.79 4.79 -2.02 -0.01 0.78 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 26 H 0.04 0.81 8.14 -51.92 -0.42 0.38 16 27 H 0.09 2.44 5.95 -51.93 -0.31 2.14 16 28 H 0.03 0.73 7.05 -51.93 -0.37 0.37 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.07 1.53 5.23 -51.93 -0.27 1.25 16 31 H 0.06 1.18 7.63 -51.93 -0.40 0.79 16 32 H 0.07 1.27 7.10 -51.93 -0.37 0.90 16 33 H 0.05 0.60 5.71 -51.93 -0.30 0.30 16 34 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16 35 H 0.02 0.29 8.11 -51.93 -0.42 -0.13 16 36 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 37 H 0.08 1.22 6.32 -51.93 -0.33 0.89 16 38 H 0.07 0.86 5.36 -51.93 -0.28 0.58 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.02 0.22 8.05 -51.93 -0.42 -0.20 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.49 5.08 -51.93 -0.26 1.23 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -27.06 306.84 -8.37 -35.44 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.35 Total: 1.07 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 0.61 Total: -12.23 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -1.24 Total: -45.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.06 -8.37 -35.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226073266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.346 kcal (2) G-P(sol) polarization free energy of solvation -27.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds