Wall clock time and date at job start Mon Mar 30 2020 03:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 H 1.09001 * 109.47192 * 305.00051 * 3 2 1 5 5 C 1.50702 * 109.47514 * 185.00152 * 3 2 1 6 6 H 1.07999 * 120.00325 * 239.99975 * 5 3 2 7 7 C 1.37881 * 119.99884 * 59.99730 * 5 3 2 8 8 N 1.31509 * 120.00070 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99890 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46992 * 90.00127 * 9 7 5 11 11 H 1.48504 * 109.47014 * 210.00108 * 9 7 5 12 12 H 1.48498 * 109.47192 * 330.00147 * 9 7 5 13 13 N 1.46896 * 109.47239 * 65.00111 * 3 2 1 14 14 C 1.48561 * 110.99993 * 69.87431 * 13 3 2 15 15 C 1.54383 * 104.69710 * 159.10299 * 14 13 3 16 16 H 1.09002 * 110.32782 * 95.08631 * 15 14 13 17 17 C 1.53002 * 110.31928 * 217.18994 * 15 14 13 18 18 C 1.54256 * 105.06101 * 336.08474 * 15 14 13 19 19 H 1.09000 * 110.32251 * 118.89847 * 18 15 14 20 20 N 1.46901 * 110.32660 * 241.10705 * 18 15 14 21 21 C 1.46896 * 111.00117 * 157.87239 * 20 18 15 22 22 C 1.46900 * 110.99856 * 281.82535 * 20 18 15 23 23 C 1.48859 * 111.13655 * 185.19645 * 13 3 2 24 24 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47407 * 300.00108 * 1 2 3 26 26 H 1.09008 * 109.47272 * 59.99852 * 1 2 3 27 27 H 1.09003 * 109.47407 * 239.99892 * 2 1 3 28 28 H 1.08995 * 109.47364 * 119.99984 * 2 1 3 29 29 H 0.96997 * 120.00525 * 179.97438 * 8 7 5 30 30 H 1.08995 * 110.41328 * 40.26521 * 14 13 3 31 31 H 1.08997 * 110.40781 * 277.93599 * 14 13 3 32 32 H 1.09004 * 109.46966 * 70.48736 * 17 15 14 33 33 H 1.09003 * 109.47016 * 190.48197 * 17 15 14 34 34 H 1.08993 * 109.47535 * 310.48511 * 17 15 14 35 35 H 1.08998 * 109.47626 * 53.07458 * 21 20 18 36 36 H 1.09000 * 109.47164 * 173.07799 * 21 20 18 37 37 H 1.09003 * 109.46770 * 293.07820 * 21 20 18 38 38 H 1.09000 * 109.47196 * 43.71609 * 22 20 18 39 39 H 1.09003 * 109.47007 * 163.71379 * 22 20 18 40 40 H 1.09007 * 109.47014 * 283.71185 * 22 20 18 41 41 H 1.08998 * 110.39581 * 82.21221 * 23 13 3 42 42 H 1.09001 * 110.49142 * 319.84979 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8801 -1.3812 10 1 6.5538 -0.3520 -0.7599 11 1 6.3834 0.9215 -2.8166 12 1 6.5575 2.0720 -0.6890 13 7 1.6514 2.0992 1.2552 14 6 2.4099 1.5420 2.4046 15 6 2.3214 2.6298 3.4966 16 1 1.4959 2.4179 4.1761 17 6 3.6382 2.7133 4.2713 18 6 2.0651 3.9450 2.7323 19 1 1.1126 4.3796 3.0356 20 7 3.1597 4.8953 2.9706 21 6 3.2290 5.8980 1.8993 22 6 3.0226 5.5375 4.2846 23 6 2.0202 3.5414 1.2429 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8291 -0.0604 -2.9503 30 1 3.4489 1.3672 2.1255 31 1 1.9494 0.6170 2.7514 32 1 4.4099 3.1409 3.6311 33 1 3.5036 3.3448 5.1495 34 1 3.9391 1.7139 4.5851 35 1 2.2520 6.3649 1.7749 36 1 3.9646 6.6587 2.1606 37 1 3.5217 5.4143 0.9674 38 1 2.7555 4.7878 5.0294 39 1 3.9681 6.0039 4.5615 40 1 2.2425 6.2975 4.2380 41 1 1.2645 4.1222 0.7143 42 1 2.9977 3.6813 0.7814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226073266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:47 Heat of formation + Delta-G solvation = 1.362617 kcal Electronic energy + Delta-G solvation = -19010.454011 eV Core-core repulsion = 16411.124935 eV Total energy + Delta-G solvation = -2599.329076 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73423 -37.82652 -35.29950 -33.63515 -32.56603 -29.89185 -28.14595 -28.11089 -26.55922 -25.11752 -23.71988 -22.29622 -20.88836 -19.99033 -18.41021 -17.11729 -17.08151 -16.26800 -15.73837 -15.56321 -15.28891 -14.94723 -14.39882 -14.16374 -13.70004 -13.51424 -13.37273 -13.18829 -13.11988 -12.93833 -12.82158 -12.63304 -12.45697 -12.34441 -11.97412 -11.88727 -11.69130 -11.55606 -11.45047 -11.25537 -11.13655 -10.96687 -10.41811 -9.13389 -8.98418 -8.02699 -6.22481 1.36899 1.39068 1.48006 2.41165 3.01442 3.16961 3.69553 3.81305 3.87589 4.24567 4.31941 4.46462 4.56780 4.57433 4.66270 4.69535 4.74099 4.77880 4.80368 4.90377 4.96519 4.99231 5.03071 5.05686 5.18701 5.20841 5.25070 5.36181 5.41318 5.45751 5.48426 5.64008 5.71590 5.78226 6.04733 6.16499 6.17995 6.27990 6.38763 6.53093 6.98123 7.46881 8.93912 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.009106 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.677250 B = 3074.017262 C = 3723.431876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.211 3.789 4 H -0.001 1.001 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.510 5.510 14 C 0.043 3.957 15 C -0.082 4.082 16 H 0.081 0.919 17 C -0.126 4.126 18 C 0.092 3.908 19 H 0.052 0.948 20 N -0.547 5.547 21 C 0.024 3.976 22 C 0.021 3.979 23 C 0.042 3.958 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.029 0.971 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.057 0.943 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 7.633 11.689 14.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.104 3.896 4 H 0.017 0.983 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.233 5.233 14 C -0.085 4.085 15 C -0.101 4.101 16 H 0.099 0.901 17 C -0.183 4.183 18 C -0.017 4.017 19 H 0.070 0.930 20 N -0.272 5.272 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.087 4.087 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.797 7.204 11.546 13.727 hybrid contribution 1.103 0.313 -0.969 1.501 sum -0.694 7.516 10.577 12.994 Atomic orbital electron populations 1.21571 0.96354 0.99825 1.00578 1.21373 0.94451 0.98114 1.00193 1.19114 0.92117 0.91616 0.86802 0.98293 1.21939 0.93827 1.37314 1.05117 0.92664 1.25592 1.01590 0.95103 0.95597 1.70002 1.36165 1.39189 1.09825 0.85781 0.81760 0.78421 0.77052 1.20285 1.21018 1.19748 1.65710 1.51262 1.01972 1.04385 1.23050 0.97270 0.97230 0.90966 1.21903 0.99170 0.93028 0.96010 0.90087 1.21741 0.96404 1.00553 0.99645 1.22300 0.91888 0.93175 0.94290 0.93001 1.62106 1.44377 1.17181 1.03492 1.22388 1.00476 0.94527 0.95014 1.22625 1.01375 0.98395 0.90222 1.23084 0.98993 0.90875 0.95703 0.93484 0.92519 0.94930 0.91958 0.95309 0.93033 0.94214 0.92105 0.92627 0.90883 0.93813 0.95257 0.90175 0.92950 0.90217 0.90545 0.95260 0.92454 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.80 71.98 0.71 -4.47 16 2 C -0.10 -5.02 5.25 30.59 0.16 -4.86 16 3 C 0.21 10.74 1.76 44.17 0.08 10.82 16 4 H 0.00 -0.05 8.13 -2.39 -0.02 -0.07 16 5 C -0.54 -29.55 6.58 25.60 0.17 -29.39 16 6 H 0.06 3.05 5.65 -2.91 -0.02 3.03 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -52.65 11.29 21.45 0.24 -52.40 16 9 Si 0.94 44.18 29.54 68.60 2.03 46.21 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 13 N -0.51 -21.97 4.82 -859.92 -4.15 -26.11 16 14 C 0.04 1.70 5.01 86.45 0.43 2.14 16 15 C -0.08 -2.53 3.45 -9.90 -0.03 -2.57 16 16 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 17 C -0.13 -3.48 7.84 71.98 0.56 -2.92 16 18 C 0.09 2.90 2.85 45.81 0.13 3.03 16 19 H 0.05 1.53 8.03 -2.39 -0.02 1.51 16 20 N -0.55 -15.29 3.29 -917.99 -3.02 -18.31 16 21 C 0.02 0.64 8.80 127.69 1.12 1.77 16 22 C 0.02 0.44 8.78 127.69 1.12 1.56 16 23 C 0.04 1.66 4.79 86.39 0.41 2.07 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 26 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.06 3.42 5.95 -2.39 -0.01 3.41 16 28 H 0.03 1.37 7.05 -2.39 -0.02 1.36 16 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.04 1.80 5.23 -2.39 -0.01 1.79 16 31 H 0.06 2.35 7.63 -2.39 -0.02 2.34 16 32 H 0.05 1.78 7.10 -2.39 -0.02 1.76 16 33 H 0.07 1.62 5.71 -2.39 -0.01 1.61 16 34 H 0.04 1.18 8.13 -2.39 -0.02 1.16 16 35 H 0.03 0.73 8.11 -2.39 -0.02 0.71 16 36 H 0.08 1.79 8.07 -2.39 -0.02 1.77 16 37 H 0.05 1.66 6.32 -2.39 -0.02 1.64 16 38 H 0.08 1.54 5.36 -2.39 -0.01 1.53 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.03 0.56 8.05 -2.38 -0.02 0.54 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 42 H 0.04 1.88 5.08 -2.39 -0.01 1.87 16 Total: -1.00 -58.96 306.84 1.39 -57.57 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.97 Total: 14.25 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 5.31 Total: -21.21 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -6.92 Total: -96.83 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -58.96 1.39 -57.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226073266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.935 kcal (2) G-P(sol) polarization free energy of solvation -58.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds