Wall clock time and date at job start Mon Mar 30 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47212 * 2 1 4 4 H 1.09002 * 109.46644 * 58.97635 * 3 2 1 5 5 C 1.50693 * 109.47158 * 178.97644 * 3 2 1 6 6 H 1.08000 * 120.00165 * 116.64374 * 5 3 2 7 7 C 1.37884 * 119.99998 * 296.64250 * 5 3 2 8 8 N 1.31511 * 120.00002 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99857 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47004 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47123 * 120.00065 * 9 7 5 12 12 H 1.48495 * 109.46861 * 239.99850 * 9 7 5 13 13 N 1.46897 * 109.46750 * 298.97883 * 3 2 1 14 14 C 1.46852 * 111.00016 * 277.47198 * 13 3 2 15 15 H 1.09002 * 109.46306 * 294.18710 * 14 13 3 16 16 C 1.53008 * 109.44698 * 54.15425 * 14 13 3 17 17 N 1.46900 * 109.46943 * 282.51308 * 16 14 13 18 18 C 1.53030 * 109.52451 * 174.16256 * 14 13 3 19 19 C 1.53121 * 109.27818 * 59.18167 * 18 14 13 20 20 C 1.53121 * 109.16050 * 302.34598 * 19 18 14 21 21 C 1.46849 * 110.99551 * 153.22811 * 13 3 2 22 22 H 1.09007 * 109.49764 * 305.83296 * 21 13 3 23 23 C 1.53003 * 109.43085 * 65.79850 * 21 13 3 24 24 H 1.08997 * 109.47462 * 65.01542 * 1 2 3 25 25 H 1.09003 * 109.46987 * 185.01641 * 1 2 3 26 26 H 1.09004 * 109.47249 * 305.01091 * 1 2 3 27 27 H 1.08996 * 109.47173 * 239.99634 * 2 1 3 28 28 H 1.08998 * 109.47040 * 119.99744 * 2 1 3 29 29 H 0.96999 * 120.00275 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.46987 * 42.51889 * 16 14 13 31 31 H 1.09003 * 109.46757 * 162.52011 * 16 14 13 32 32 H 1.00904 * 110.99654 * 176.31101 * 17 16 14 33 33 H 1.00893 * 111.00335 * 300.26312 * 17 16 14 34 34 H 1.08998 * 109.50337 * 299.24276 * 18 14 13 35 35 H 1.09005 * 109.50519 * 179.12333 * 18 14 13 36 36 H 1.09002 * 109.52119 * 182.44058 * 19 18 14 37 37 H 1.09004 * 109.57363 * 62.28090 * 19 18 14 38 38 H 1.09006 * 109.49925 * 177.59082 * 20 19 18 39 39 H 1.08999 * 109.50290 * 297.66946 * 20 19 18 40 40 H 1.09002 * 109.46959 * 180.02562 * 23 21 13 41 41 H 1.08994 * 109.47198 * 300.03357 * 23 21 13 42 42 H 1.09003 * 109.46881 * 60.03325 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6617 1.9616 0.8807 5 6 3.5467 1.4426 0.0254 6 1 4.1008 1.8571 -0.8039 7 6 4.2180 0.9135 1.1073 8 7 3.5434 0.4093 2.1174 9 14 6.0858 0.9143 1.1391 10 1 6.6018 1.5346 -0.1076 11 1 6.5606 1.6910 2.3123 12 1 6.5797 -0.4827 1.2375 13 7 1.5706 2.1278 -1.2116 14 6 2.4403 1.8280 -2.3562 15 1 3.4295 2.2512 -2.1813 16 6 2.5570 0.3116 -2.5240 17 7 3.4894 -0.2216 -1.5219 18 6 1.8423 2.4371 -3.6263 19 6 1.7085 3.9517 -3.4461 20 6 0.8378 4.2369 -2.2192 21 6 1.4641 3.5755 -0.9895 22 1 0.8384 3.7647 -0.1172 23 6 2.8589 4.1579 -0.7521 24 1 -0.3634 0.4340 -0.9315 25 1 -0.3633 -1.0238 0.0899 26 1 -0.3634 0.5896 0.8417 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0156 0.0374 2.8787 30 1 1.5769 -0.1454 -2.3880 31 1 2.9284 0.0842 -3.5232 32 1 3.5379 -1.2282 -1.5727 33 1 4.4048 0.1901 -1.6245 34 1 0.8589 2.0041 -3.8093 35 1 2.4961 2.2277 -4.4731 36 1 1.2429 4.3842 -4.3317 37 1 2.6957 4.3910 -3.3022 38 1 0.7741 5.3134 -2.0606 39 1 -0.1616 3.8329 -2.3804 40 1 2.7806 5.2325 -0.5867 41 1 3.3050 3.6869 0.1238 42 1 3.4847 3.9693 -1.6244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226320904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:36 Heat of formation + Delta-G solvation = 51.594928 kcal Electronic energy + Delta-G solvation = -20007.983198 eV Core-core repulsion = 17410.832358 eV Total energy + Delta-G solvation = -2597.150840 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.50714 -35.31751 -33.32209 -31.59111 -30.69773 -30.16007 -26.80802 -26.24896 -24.07028 -22.94211 -21.84587 -20.51504 -19.25029 -17.96848 -15.99719 -15.37105 -14.95099 -14.38966 -14.04751 -13.92771 -13.81378 -13.07448 -12.67828 -12.28614 -12.19520 -12.09402 -11.60293 -11.48756 -11.20440 -11.09112 -10.93931 -10.80641 -10.63028 -10.42238 -10.17902 -10.08609 -9.88280 -9.67638 -9.28304 -9.05127 -8.91762 -8.45161 -8.06981 -6.99501 -6.83407 -5.64662 -3.46369 3.37772 3.45091 3.48554 4.63567 5.04467 5.27656 5.41057 5.43746 5.56763 5.76086 5.92173 6.03906 6.05309 6.16415 6.20178 6.26591 6.35196 6.39405 6.43987 6.47706 6.52651 6.64014 6.72049 6.74921 6.78920 6.89585 6.98031 7.09677 7.35752 7.42405 7.47575 7.82290 7.97016 8.09888 8.26806 8.29104 8.46306 8.60358 8.64907 8.93477 9.28985 9.90828 11.41257 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023250 B = 0.011323 C = 0.010279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.990310 B = 2472.303057 C = 2723.260421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.226 3.774 4 H 0.022 0.978 5 C -0.441 4.441 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.866 3.134 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.291 1.291 13 N -0.522 5.522 14 C 0.092 3.908 15 H 0.053 0.947 16 C 0.067 3.933 17 N -0.772 5.772 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.110 4.110 21 C 0.088 3.912 22 H 0.067 0.933 23 C -0.183 4.183 24 H 0.041 0.959 25 H 0.016 0.984 26 H 0.027 0.973 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.250 0.750 30 H 0.076 0.924 31 H -0.002 1.002 32 H 0.300 0.700 33 H 0.328 0.672 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.089 0.911 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 3.045 -9.191 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C 0.120 3.880 4 H 0.040 0.960 5 C -0.481 4.481 6 H 0.072 0.928 7 C -0.141 4.141 8 N -0.540 5.540 9 Si 0.696 3.304 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.218 1.218 13 N -0.247 5.247 14 C -0.017 4.017 15 H 0.071 0.929 16 C -0.063 4.063 17 N -0.304 5.304 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.148 4.148 21 C -0.021 4.021 22 H 0.085 0.915 23 C -0.242 4.242 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.016 0.984 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.108 0.892 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.640 3.087 -8.611 9.846 hybrid contribution 2.516 -0.075 -0.467 2.560 sum -1.124 3.012 -9.079 9.631 Atomic orbital electron populations 1.21860 1.01252 0.97360 0.99680 1.22223 0.89335 0.99717 1.04383 1.19161 0.92869 0.90971 0.85004 0.96035 1.21346 0.92006 1.33573 1.01202 0.92843 1.24603 0.95678 0.97221 0.96551 1.69887 1.33566 1.42620 1.07971 0.86982 0.89035 0.77095 0.77240 1.20682 1.22053 1.21811 1.62587 1.49431 1.05894 1.06738 1.21434 0.95967 0.94072 0.90213 0.92911 1.21836 0.98247 0.95624 0.90639 1.60963 1.12907 1.07188 1.49356 1.21667 1.00887 0.95240 0.97455 1.21534 0.99892 0.96483 0.97445 1.21604 0.99106 0.98780 0.95278 1.21470 0.95179 0.89504 0.95954 0.91498 1.22643 0.99016 0.98790 1.03733 0.94032 0.96516 0.95333 0.89248 0.90808 0.93964 0.90563 0.98446 0.88645 0.85588 0.92052 0.93246 0.93287 0.92439 0.93021 0.92103 0.95130 0.89250 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.69 37.16 0.36 -2.64 16 2 C -0.12 -2.70 4.36 -26.73 -0.12 -2.82 16 3 C 0.23 5.25 1.39 -68.87 -0.10 5.15 16 4 H 0.02 0.59 7.68 -51.93 -0.40 0.19 16 5 C -0.44 -10.58 2.24 -34.44 -0.08 -10.66 16 6 H 0.05 1.28 3.97 -52.49 -0.21 1.08 16 7 C 0.06 1.49 5.21 -17.82 -0.09 1.40 16 8 N -0.90 -25.07 11.57 55.43 0.64 -24.43 16 9 Si 0.87 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.52 -10.34 3.77 -212.25 -0.80 -11.14 16 14 C 0.09 1.68 1.54 -67.72 -0.10 1.58 16 15 H 0.05 1.07 4.03 -51.93 -0.21 0.86 16 16 C 0.07 1.19 5.35 -3.82 -0.02 1.17 16 17 N -0.77 -14.75 3.74 -10.37 -0.04 -14.79 16 18 C -0.11 -1.76 5.30 -26.65 -0.14 -1.90 16 19 C -0.12 -1.69 5.69 -26.61 -0.15 -1.84 16 20 C -0.11 -1.70 5.61 -26.65 -0.15 -1.85 16 21 C 0.09 1.64 2.85 -67.72 -0.19 1.44 16 22 H 0.07 1.31 7.91 -51.92 -0.41 0.90 16 23 C -0.18 -3.46 7.50 37.16 0.28 -3.18 16 24 H 0.04 0.83 7.79 -51.93 -0.40 0.42 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.93 2.70 -60.58 -0.16 1.76 16 28 H 0.07 1.96 6.32 -51.93 -0.33 1.63 16 29 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.08 1.41 6.51 -51.93 -0.34 1.08 16 31 H 0.00 -0.04 8.02 -51.93 -0.42 -0.45 16 32 H 0.30 5.30 8.86 -39.29 -0.35 4.95 16 33 H 0.33 6.43 7.38 -39.30 -0.29 6.14 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.98 5.82 -51.93 -0.30 1.68 16 42 H 0.05 0.90 4.79 -51.93 -0.25 0.65 16 LS Contribution 288.44 15.07 4.35 4.35 Total: -1.00 -26.00 288.44 -8.30 -34.30 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.92 Total: 10.29 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.50 Total: -14.15 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.20 Total: -50.36 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.00 -8.30 -34.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226320904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.895 kcal (2) G-P(sol) polarization free energy of solvation -26.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds