Wall clock time and date at job start Mon Mar 30 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47212 * 2 1 4 4 H 1.09002 * 109.46644 * 58.97635 * 3 2 1 5 5 C 1.50693 * 109.47158 * 178.97644 * 3 2 1 6 6 H 1.08000 * 120.00165 * 116.64374 * 5 3 2 7 7 C 1.37884 * 119.99998 * 296.64250 * 5 3 2 8 8 N 1.31511 * 120.00002 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99857 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47004 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47123 * 120.00065 * 9 7 5 12 12 H 1.48495 * 109.46861 * 239.99850 * 9 7 5 13 13 N 1.46897 * 109.46750 * 298.97883 * 3 2 1 14 14 C 1.46852 * 111.00016 * 277.47198 * 13 3 2 15 15 H 1.09002 * 109.46306 * 294.18710 * 14 13 3 16 16 C 1.53008 * 109.44698 * 54.15425 * 14 13 3 17 17 N 1.46900 * 109.46943 * 282.51308 * 16 14 13 18 18 C 1.53030 * 109.52451 * 174.16256 * 14 13 3 19 19 C 1.53121 * 109.27818 * 59.18167 * 18 14 13 20 20 C 1.53121 * 109.16050 * 302.34598 * 19 18 14 21 21 C 1.46849 * 110.99551 * 153.22811 * 13 3 2 22 22 H 1.09007 * 109.49764 * 305.83296 * 21 13 3 23 23 C 1.53003 * 109.43085 * 65.79850 * 21 13 3 24 24 H 1.08997 * 109.47462 * 65.01542 * 1 2 3 25 25 H 1.09003 * 109.46987 * 185.01641 * 1 2 3 26 26 H 1.09004 * 109.47249 * 305.01091 * 1 2 3 27 27 H 1.08996 * 109.47173 * 239.99634 * 2 1 3 28 28 H 1.08998 * 109.47040 * 119.99744 * 2 1 3 29 29 H 0.96999 * 120.00275 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.46987 * 42.51889 * 16 14 13 31 31 H 1.09003 * 109.46757 * 162.52011 * 16 14 13 32 32 H 1.00904 * 110.99654 * 176.31101 * 17 16 14 33 33 H 1.00893 * 111.00335 * 300.26312 * 17 16 14 34 34 H 1.08998 * 109.50337 * 299.24276 * 18 14 13 35 35 H 1.09005 * 109.50519 * 179.12333 * 18 14 13 36 36 H 1.09002 * 109.52119 * 182.44058 * 19 18 14 37 37 H 1.09004 * 109.57363 * 62.28090 * 19 18 14 38 38 H 1.09006 * 109.49925 * 177.59082 * 20 19 18 39 39 H 1.08999 * 109.50290 * 297.66946 * 20 19 18 40 40 H 1.09002 * 109.46959 * 180.02562 * 23 21 13 41 41 H 1.08994 * 109.47198 * 300.03357 * 23 21 13 42 42 H 1.09003 * 109.46881 * 60.03325 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6617 1.9616 0.8807 5 6 3.5467 1.4426 0.0254 6 1 4.1008 1.8571 -0.8039 7 6 4.2180 0.9135 1.1073 8 7 3.5434 0.4093 2.1174 9 14 6.0858 0.9143 1.1391 10 1 6.6018 1.5346 -0.1076 11 1 6.5606 1.6910 2.3123 12 1 6.5797 -0.4827 1.2375 13 7 1.5706 2.1278 -1.2116 14 6 2.4403 1.8280 -2.3562 15 1 3.4295 2.2512 -2.1813 16 6 2.5570 0.3116 -2.5240 17 7 3.4894 -0.2216 -1.5219 18 6 1.8423 2.4371 -3.6263 19 6 1.7085 3.9517 -3.4461 20 6 0.8378 4.2369 -2.2192 21 6 1.4641 3.5755 -0.9895 22 1 0.8384 3.7647 -0.1172 23 6 2.8589 4.1579 -0.7521 24 1 -0.3634 0.4340 -0.9315 25 1 -0.3633 -1.0238 0.0899 26 1 -0.3634 0.5896 0.8417 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0156 0.0374 2.8787 30 1 1.5769 -0.1454 -2.3880 31 1 2.9284 0.0842 -3.5232 32 1 3.5379 -1.2282 -1.5727 33 1 4.4048 0.1901 -1.6245 34 1 0.8589 2.0041 -3.8093 35 1 2.4961 2.2277 -4.4731 36 1 1.2429 4.3842 -4.3317 37 1 2.6957 4.3910 -3.3022 38 1 0.7741 5.3134 -2.0606 39 1 -0.1616 3.8329 -2.3804 40 1 2.7806 5.2325 -0.5867 41 1 3.3050 3.6869 0.1238 42 1 3.4847 3.9693 -1.6244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226320904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:36 Heat of formation + Delta-G solvation = 35.512213 kcal Electronic energy + Delta-G solvation = -20008.680597 eV Core-core repulsion = 17410.832358 eV Total energy + Delta-G solvation = -2597.848238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04476 -36.85586 -34.91883 -33.43240 -32.29722 -31.65938 -28.47449 -27.94314 -25.52775 -24.72588 -23.23936 -22.05860 -21.00645 -19.43241 -17.85734 -17.03434 -16.50896 -16.08406 -15.58233 -15.37992 -15.34879 -14.68274 -14.22611 -14.02594 -13.65128 -13.55828 -13.23017 -13.01489 -12.92691 -12.80054 -12.60104 -12.46961 -12.24251 -12.12355 -11.89512 -11.53267 -11.37826 -11.10929 -10.93930 -10.83524 -10.60984 -10.27797 -10.00862 -8.60065 -8.51702 -7.64247 -5.47971 1.44046 1.50017 1.54137 2.65985 3.55216 3.57859 3.99599 4.09953 4.17778 4.35204 4.51007 4.66832 4.68548 4.78496 4.81089 4.85425 4.88699 4.94411 4.98744 5.09912 5.16295 5.19501 5.24500 5.27558 5.34167 5.38507 5.47321 5.54015 5.63946 5.66255 5.83251 5.96493 6.06617 6.27751 6.50617 6.54219 6.75844 6.82191 7.00726 7.18535 7.35773 7.89983 9.39712 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023250 B = 0.011323 C = 0.010279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.990310 B = 2472.303057 C = 2723.260421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.235 3.765 4 H -0.028 1.028 5 C -0.407 4.407 6 H 0.059 0.941 7 C 0.009 3.991 8 N -0.936 5.936 9 Si 0.916 3.084 10 H -0.268 1.268 11 H -0.309 1.309 12 H -0.297 1.297 13 N -0.520 5.520 14 C 0.090 3.910 15 H 0.034 0.966 16 C 0.070 3.930 17 N -0.794 5.794 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.101 4.101 21 C 0.081 3.919 22 H 0.046 0.954 23 C -0.173 4.173 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.011 0.989 27 H 0.108 0.892 28 H 0.034 0.966 29 H 0.241 0.759 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.311 0.689 33 H 0.326 0.674 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 3.775 -12.253 13.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C 0.128 3.872 4 H -0.010 1.010 5 C -0.448 4.448 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.582 5.582 9 Si 0.747 3.253 10 H -0.192 1.192 11 H -0.238 1.238 12 H -0.224 1.224 13 N -0.244 5.244 14 C -0.019 4.019 15 H 0.052 0.948 16 C -0.060 4.060 17 N -0.326 5.326 18 C -0.146 4.146 19 C -0.151 4.151 20 C -0.139 4.139 21 C -0.028 4.028 22 H 0.065 0.935 23 C -0.231 4.231 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.125 0.875 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.126 0.874 33 H 0.142 0.858 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.895 3.831 -11.712 12.924 hybrid contribution 2.558 -0.256 0.446 2.609 sum -1.337 3.576 -11.266 11.896 Atomic orbital electron populations 1.21731 0.99661 0.98143 0.99543 1.22124 0.90740 0.99004 1.03254 1.18875 0.92261 0.91123 0.84925 1.01017 1.21485 0.92475 1.30604 1.00249 0.92347 1.25081 0.98345 0.98236 0.96814 1.70051 1.34458 1.44998 1.08673 0.86169 0.85855 0.76354 0.76901 1.19200 1.23760 1.22413 1.62539 1.49519 1.06631 1.05753 1.21542 0.94865 0.94673 0.90821 0.94830 1.21818 0.97537 0.95051 0.91598 1.60607 1.13059 1.08115 1.50837 1.21626 1.01245 0.95677 0.96093 1.21536 0.99734 0.95899 0.97891 1.21534 0.99038 0.99483 0.93872 1.21570 0.94932 0.89006 0.97276 0.93519 1.22477 0.98978 0.99722 1.01945 0.92817 0.94972 0.96954 0.87463 0.94739 0.94954 0.91135 0.95685 0.87446 0.85849 0.91625 0.91218 0.90474 0.92711 0.91194 0.91806 0.93127 0.93271 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 9.69 71.98 0.70 -4.82 16 2 C -0.11 -5.21 4.36 30.59 0.13 -5.08 16 3 C 0.24 11.14 1.39 44.17 0.06 11.21 16 4 H -0.03 -1.61 7.68 -2.39 -0.02 -1.63 16 5 C -0.41 -19.80 2.24 25.60 0.06 -19.75 16 6 H 0.06 2.78 3.97 -2.91 -0.01 2.77 16 7 C 0.01 0.49 5.21 84.66 0.44 0.93 16 8 N -0.94 -54.53 11.57 21.45 0.25 -54.28 16 9 Si 0.92 43.20 29.54 68.60 2.03 45.23 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.31 -15.32 7.11 99.48 0.71 -14.62 16 12 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 13 N -0.52 -20.16 3.77 -825.42 -3.11 -23.28 16 14 C 0.09 3.06 1.54 44.94 0.07 3.13 16 15 H 0.03 1.30 4.03 -2.39 -0.01 1.29 16 16 C 0.07 2.31 5.35 86.31 0.46 2.77 16 17 N -0.79 -29.33 3.74 -186.71 -0.70 -30.03 16 18 C -0.11 -2.89 5.30 30.64 0.16 -2.73 16 19 C -0.11 -2.81 5.69 30.67 0.17 -2.63 16 20 C -0.10 -2.82 5.61 30.65 0.17 -2.64 16 21 C 0.08 2.94 2.85 44.94 0.13 3.07 16 22 H 0.05 1.86 7.91 -2.38 -0.02 1.84 16 23 C -0.17 -6.38 7.50 71.98 0.54 -5.84 16 24 H 0.05 2.07 7.79 -2.39 -0.02 2.05 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.01 0.50 8.14 -2.38 -0.02 0.49 16 27 H 0.11 4.55 2.70 -19.46 -0.05 4.50 16 28 H 0.03 1.87 6.32 -2.39 -0.02 1.86 16 29 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.07 2.42 6.51 -2.39 -0.02 2.41 16 31 H 0.03 0.71 8.02 -2.39 -0.02 0.69 16 32 H 0.31 10.57 8.86 -89.69 -0.79 9.78 16 33 H 0.33 12.32 7.38 -89.70 -0.66 11.66 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.41 6.56 -2.38 -0.02 1.39 16 38 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 2.20 5.82 -2.39 -0.01 2.19 16 42 H 0.05 1.90 4.79 -2.39 -0.01 1.89 16 Total: -1.00 -57.67 288.44 1.08 -56.59 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.48 Total: 28.15 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.10 Total: -22.38 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -3.56 Total: -107.59 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -57.67 1.08 -56.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226320904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.101 kcal (2) G-P(sol) polarization free energy of solvation -57.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds