Wall clock time and date at job start Mon Mar 30 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46982 * 2 1 4 4 H 1.08997 * 109.47221 * 30.02466 * 3 2 1 5 5 C 1.50702 * 109.47103 * 150.02212 * 3 2 1 6 6 H 1.08003 * 119.99692 * 114.79046 * 5 3 2 7 7 C 1.37874 * 120.00092 * 294.79320 * 5 3 2 8 8 N 1.31521 * 119.99990 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00127 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47039 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47310 * 119.99950 * 9 7 5 12 12 H 1.48498 * 109.47227 * 239.99851 * 9 7 5 13 13 N 1.46905 * 109.47175 * 270.02148 * 3 2 1 14 14 C 1.46839 * 110.99879 * 26.21471 * 13 3 2 15 15 C 1.53038 * 109.52375 * 185.83920 * 14 13 3 16 16 C 1.53122 * 109.27674 * 300.82139 * 15 14 13 17 17 C 1.53115 * 109.16101 * 57.65000 * 16 15 14 18 18 H 1.08997 * 109.50251 * 62.33333 * 17 16 15 19 19 C 1.53002 * 109.50420 * 182.40540 * 17 16 15 20 20 C 1.46846 * 110.99653 * 150.42474 * 13 3 2 21 21 H 1.09008 * 109.45894 * 294.17565 * 20 13 3 22 22 C 1.52996 * 109.46604 * 54.14409 * 20 13 3 23 23 N 1.46905 * 109.46886 * 292.33829 * 22 20 13 24 24 H 1.08997 * 109.47326 * 305.07751 * 1 2 3 25 25 H 1.08999 * 109.47141 * 65.08151 * 1 2 3 26 26 H 1.09003 * 109.46553 * 185.07797 * 1 2 3 27 27 H 1.09004 * 109.47126 * 240.00073 * 2 1 3 28 28 H 1.09002 * 109.47232 * 120.00319 * 2 1 3 29 29 H 0.96996 * 120.00020 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.46610 * 305.85341 * 14 13 3 31 31 H 1.08995 * 109.46617 * 65.83247 * 14 13 3 32 32 H 1.09002 * 109.50119 * 60.75823 * 15 14 13 33 33 H 1.08996 * 109.50454 * 180.87986 * 15 14 13 34 34 H 1.08997 * 109.52544 * 177.55968 * 16 15 14 35 35 H 1.09002 * 109.51990 * 297.74500 * 16 15 14 36 36 H 1.08999 * 109.46791 * 60.00284 * 19 17 16 37 37 H 1.08992 * 109.47410 * 180.02562 * 19 17 16 38 38 H 1.09001 * 109.47230 * 300.00801 * 19 17 16 39 39 H 1.08998 * 109.47377 * 52.33760 * 22 20 13 40 40 H 1.08999 * 109.47055 * 172.34104 * 22 20 13 41 41 H 1.00903 * 110.99449 * 183.57743 * 23 22 20 42 42 H 1.00892 * 111.00397 * 307.53021 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3222 2.0816 0.5142 5 6 3.3678 1.5059 0.7099 6 1 4.2600 1.7735 0.1634 7 6 3.4435 1.2222 2.0570 8 7 2.3570 0.8957 2.7224 9 14 5.0894 1.3000 2.9369 10 1 6.1492 1.6865 1.9711 11 1 5.0212 2.3066 4.0266 12 1 5.4066 -0.0317 3.5124 13 7 2.2027 1.9044 -1.3850 14 6 1.3034 1.1785 -2.2909 15 6 1.6015 1.5796 -3.7373 16 6 1.4040 3.0900 -3.8940 17 6 2.3166 3.8213 -2.9057 18 1 3.3578 3.5976 -3.1379 19 6 2.0820 5.3294 -3.0136 20 6 1.9978 3.3551 -1.4834 21 1 0.9603 3.5922 -1.2474 22 6 2.9213 4.0687 -0.4940 23 7 2.4965 3.7646 0.8790 24 1 -0.3634 0.5906 0.8410 25 1 -0.3633 0.4330 -0.9320 26 1 -0.3632 -1.0237 0.0910 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.4102 0.6964 3.6702 30 1 1.4569 0.1059 -2.1725 31 1 0.2693 1.4259 -2.0513 32 1 2.6315 1.3200 -3.9821 33 1 0.9234 1.0524 -4.4083 34 1 1.6571 3.3868 -4.9118 35 1 0.3646 3.3448 -3.6871 36 1 1.0410 5.5527 -2.7800 37 1 2.7321 5.8495 -2.3103 38 1 2.3058 5.6603 -4.0278 39 1 3.9457 3.7267 -0.6416 40 1 2.8700 5.1447 -0.6603 41 1 3.0544 4.2705 1.5505 42 1 1.5145 3.9590 1.0051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226343743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:48 Heat of formation + Delta-G solvation = 25.804970 kcal Electronic energy + Delta-G solvation = -19494.600565 eV Core-core repulsion = 16896.331389 eV Total energy + Delta-G solvation = -2598.269176 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.19189 -35.16539 -34.03715 -31.89377 -30.81343 -30.08863 -26.80827 -26.10166 -24.35335 -22.61719 -21.65704 -20.53441 -19.17639 -18.89549 -16.02555 -15.32012 -14.88666 -14.57293 -14.15070 -13.95059 -13.60035 -13.21888 -12.93380 -12.55090 -12.28856 -12.04498 -11.95485 -11.66303 -11.59838 -11.13910 -10.89974 -10.85726 -10.65741 -10.44751 -10.32247 -10.23140 -10.13255 -9.84136 -9.35901 -9.25829 -9.06749 -8.65046 -7.88748 -6.98504 -6.83017 -5.53226 -3.36131 3.49536 3.58550 3.61851 4.72931 4.96076 5.15553 5.17345 5.36809 5.56088 5.68300 5.81455 5.84581 5.86714 5.92632 6.03587 6.11391 6.15342 6.18607 6.26506 6.29850 6.37661 6.41234 6.47675 6.55133 6.65579 6.65795 6.72676 6.79330 6.98869 7.06536 7.36531 7.40496 7.75254 7.98251 8.26818 8.29868 8.53095 8.61113 8.66870 9.01811 9.47642 10.10118 11.57552 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.009961 C = 0.008098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.465010 B = 2810.160259 C = 3456.762204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.227 3.773 4 H 0.034 0.966 5 C -0.400 4.400 6 H 0.046 0.954 7 C 0.056 3.944 8 N -0.906 5.906 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.296 1.296 13 N -0.527 5.527 14 C 0.043 3.957 15 C -0.119 4.119 16 C -0.110 4.110 17 C -0.086 4.086 18 H 0.075 0.925 19 C -0.146 4.146 20 C 0.104 3.896 21 H 0.019 0.981 22 C 0.080 3.920 23 N -0.782 5.782 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.246 0.754 30 H 0.082 0.918 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.002 0.998 41 H 0.320 0.680 42 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 5.507 -9.770 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.122 3.878 4 H 0.052 0.948 5 C -0.439 4.439 6 H 0.064 0.936 7 C -0.141 4.141 8 N -0.550 5.550 9 Si 0.704 3.296 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.223 1.223 13 N -0.252 5.252 14 C -0.085 4.085 15 C -0.157 4.157 16 C -0.148 4.148 17 C -0.106 4.106 18 H 0.093 0.907 19 C -0.204 4.204 20 C -0.005 4.005 21 H 0.037 0.963 22 C -0.051 4.051 23 N -0.310 5.310 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.019 0.981 41 H 0.133 0.867 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.234 4.616 -9.887 11.138 hybrid contribution -0.169 1.269 0.980 1.612 sum -2.402 5.884 -8.907 10.942 Atomic orbital electron populations 1.22085 0.99290 0.99167 1.00191 1.22030 0.92177 1.01341 1.00874 1.19507 0.97464 0.89778 0.81075 0.94829 1.20676 0.92381 1.38751 0.92139 0.93551 1.24563 0.94482 0.97891 0.97124 1.69939 1.26226 1.51162 1.07642 0.86861 0.86228 0.76744 0.79766 1.20684 1.22156 1.22323 1.62189 1.51255 1.01224 1.10569 1.22424 0.94173 1.00170 0.91696 1.21652 1.01516 0.95165 0.97362 1.21583 0.99056 0.95937 0.98204 1.21175 1.00286 0.93721 0.95375 0.90683 1.21890 1.01252 0.96326 1.00946 1.21439 0.95911 0.90438 0.92731 0.96314 1.21731 1.00316 0.93437 0.89639 1.59580 1.05689 1.63692 1.02026 0.93162 0.94361 0.95375 0.94530 0.90023 0.94425 0.89997 0.96011 0.91650 0.92930 0.92887 0.92983 0.93334 0.92414 0.93275 0.90666 0.98055 0.86734 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.44 37.16 0.35 -2.75 16 2 C -0.13 -2.93 4.80 -26.73 -0.13 -3.06 16 3 C 0.23 5.35 1.32 -68.86 -0.09 5.26 16 4 H 0.03 0.87 5.45 -51.93 -0.28 0.59 16 5 C -0.40 -10.40 5.31 -34.44 -0.18 -10.58 16 6 H 0.05 1.28 7.08 -52.48 -0.37 0.91 16 7 C 0.06 1.50 4.78 -17.82 -0.09 1.41 16 8 N -0.91 -25.39 11.99 55.43 0.66 -24.72 16 9 Si 0.87 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 13 N -0.53 -10.82 4.38 -220.15 -0.96 -11.79 16 14 C 0.04 0.79 3.94 -3.84 -0.02 0.78 16 15 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 16 C -0.11 -1.55 5.29 -26.61 -0.14 -1.69 16 17 C -0.09 -1.31 2.40 -90.54 -0.22 -1.53 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.15 -1.88 8.87 37.16 0.33 -1.55 16 20 C 0.10 1.90 1.54 -67.73 -0.10 1.79 16 21 H 0.02 0.37 8.09 -51.92 -0.42 -0.05 16 22 C 0.08 1.47 5.45 -3.82 -0.02 1.45 16 23 N -0.78 -15.75 4.63 -10.37 -0.05 -15.80 16 24 H 0.05 1.11 8.00 -51.93 -0.42 0.70 16 25 H 0.04 0.72 5.11 -51.93 -0.27 0.45 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.82 5.70 -51.93 -0.30 0.52 16 28 H 0.08 2.18 6.40 -51.93 -0.33 1.85 16 29 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.08 1.56 5.19 -51.93 -0.27 1.29 16 31 H 0.02 0.41 6.09 -51.93 -0.32 0.09 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.74 6.30 -51.93 -0.33 0.41 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.55 7.28 -51.93 -0.38 1.17 16 40 H 0.00 0.03 6.09 -51.93 -0.32 -0.29 16 41 H 0.32 6.20 9.08 -39.29 -0.36 5.84 16 42 H 0.31 6.17 8.22 -39.30 -0.32 5.85 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -27.30 298.60 -8.52 -35.82 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.19 Total: 7.75 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.47 Total: -12.43 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.35 Total: -52.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.30 -8.52 -35.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226343743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.629 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds