Wall clock time and date at job start Mon Mar 30 2020 03:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 H 1.08998 * 109.47112 * 304.16090 * 3 2 1 5 5 C 1.50701 * 109.47065 * 184.16667 * 3 2 1 6 6 H 1.07998 * 120.00094 * 245.53990 * 5 3 2 7 7 C 1.37885 * 120.00056 * 65.53614 * 5 3 2 8 8 N 1.31510 * 120.00035 * 196.82160 * 7 5 3 9 9 Si 1.86799 * 119.99950 * 16.82304 * 7 5 3 10 10 H 1.48494 * 109.47177 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46996 * 59.99729 * 9 7 5 12 12 H 1.48502 * 109.46930 * 300.00146 * 9 7 5 13 13 N 1.46899 * 109.47557 * 64.16409 * 3 2 1 14 14 C 1.46848 * 110.99700 * 62.40741 * 13 3 2 15 15 C 1.53042 * 109.52163 * 185.84044 * 14 13 3 16 16 H 1.08989 * 109.53518 * 60.78236 * 15 14 13 17 17 C 1.53000 * 109.50231 * 180.88265 * 15 14 13 18 18 N 1.46898 * 109.47000 * 184.80278 * 17 15 14 19 19 C 1.53120 * 109.27746 * 300.82086 * 15 14 13 20 20 C 1.53117 * 109.16327 * 57.65393 * 19 15 14 21 21 C 1.46841 * 110.99993 * 186.61584 * 13 3 2 22 22 H 1.09007 * 109.46659 * 294.17679 * 21 13 3 23 23 C 1.52997 * 109.46454 * 54.15930 * 21 13 3 24 24 H 1.08997 * 109.47471 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47425 * 300.00352 * 1 2 3 26 26 H 1.09002 * 109.47065 * 60.00370 * 1 2 3 27 27 H 1.08995 * 109.46947 * 239.99416 * 2 1 3 28 28 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 29 29 H 0.96999 * 119.99776 * 354.92784 * 8 7 5 30 30 H 1.08999 * 109.46525 * 305.85885 * 14 13 3 31 31 H 1.09003 * 109.46494 * 65.82662 * 14 13 3 32 32 H 1.09004 * 109.46758 * 304.80034 * 17 15 14 33 33 H 1.08997 * 109.47470 * 64.79917 * 17 15 14 34 34 H 1.00904 * 111.00060 * 56.04862 * 18 17 15 35 35 H 1.00901 * 110.99804 * 179.97438 * 18 17 15 36 36 H 1.09005 * 109.52182 * 297.74916 * 19 15 14 37 37 H 1.08995 * 109.52218 * 177.56496 * 19 15 14 38 38 H 1.08993 * 109.50808 * 182.40324 * 20 19 15 39 39 H 1.09003 * 109.50122 * 62.28262 * 20 19 15 40 40 H 1.09004 * 109.47354 * 59.99526 * 23 21 13 41 41 H 1.09002 * 109.47205 * 179.97438 * 23 21 13 42 42 H 1.09006 * 109.47217 * 299.99485 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6170 1.9773 -0.8503 5 6 3.5434 1.4437 -0.1032 6 1 4.1408 1.8107 0.7182 7 6 4.1564 0.9763 -1.2465 8 7 5.4339 0.6646 -1.2272 9 14 3.1722 0.7858 -2.8227 10 1 4.0561 0.2702 -3.8989 11 1 2.6212 2.1049 -3.2247 12 1 2.0570 -0.1687 -2.5976 13 7 1.6342 2.1054 1.2465 14 6 2.2333 1.4446 2.4131 15 6 1.6763 2.0670 3.6955 16 1 0.5960 1.9267 3.7293 17 6 2.3173 1.3933 4.9104 18 7 1.6996 1.9096 6.1392 19 6 1.9982 3.5639 3.7120 20 6 1.4044 4.2196 2.4622 21 6 1.9692 3.5347 1.2156 22 1 3.0526 3.6535 1.1954 23 6 1.3630 4.1735 -0.0355 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 5.9620 0.8323 -0.4310 30 1 1.9935 0.3816 2.3914 31 1 3.3155 1.5732 2.3873 32 1 2.1635 0.3158 4.8515 33 1 3.3859 1.6076 4.9231 34 1 0.6990 1.7807 6.1227 35 1 2.1059 1.4794 6.9564 36 1 3.0792 3.7041 3.7182 37 1 1.5658 4.0196 4.6028 38 1 1.6666 5.2774 2.4467 39 1 0.3197 4.1131 2.4759 40 1 0.2796 4.0545 -0.0157 41 1 1.6113 5.2346 -0.0583 42 1 1.7658 3.6866 -0.9237 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226351760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:23 Heat of formation + Delta-G solvation = -15.626834 kcal Electronic energy + Delta-G solvation = -19047.314769 eV Core-core repulsion = 16447.248975 eV Total energy + Delta-G solvation = -2600.065794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.06875 -35.81154 -34.01363 -32.03870 -31.37326 -30.53039 -27.22254 -26.58993 -23.42568 -23.01196 -22.30634 -20.36951 -19.54637 -18.76156 -17.17785 -16.01494 -14.99699 -14.63682 -14.40099 -14.11124 -13.86105 -13.53808 -13.26008 -12.97903 -12.64941 -12.52083 -11.87736 -11.72952 -11.41689 -11.34741 -11.18453 -11.04958 -10.85609 -10.45300 -10.40406 -10.22003 -10.11866 -10.01714 -9.57534 -9.42861 -9.28548 -8.88292 -8.61351 -8.32242 -7.20166 -6.33770 -4.06609 3.38471 3.41800 3.59185 4.47977 4.57128 4.89476 5.22911 5.25160 5.31831 5.42362 5.61600 5.77220 5.83733 5.98790 6.03239 6.13251 6.13884 6.15643 6.22789 6.27842 6.33562 6.35284 6.46631 6.53560 6.61467 6.71132 6.79856 6.81480 6.86456 6.87694 7.01523 7.08580 7.15319 7.29924 7.33931 7.44812 7.97225 8.19850 8.29983 8.38753 8.95322 9.62944 10.94282 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.008243 C = 0.007978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.609789 B = 3396.051581 C = 3508.709567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.183 3.817 4 H 0.038 0.962 5 C -0.622 4.622 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.908 5.908 9 Si 1.041 2.959 10 H -0.288 1.288 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.521 5.521 14 C 0.069 3.931 15 C -0.082 4.082 16 H 0.067 0.933 17 C 0.066 3.934 18 N -0.849 5.849 19 C -0.101 4.101 20 C -0.112 4.112 21 C 0.089 3.911 22 H 0.043 0.957 23 C -0.143 4.143 24 H 0.030 0.970 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.266 0.734 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.337 0.663 35 H 0.336 0.664 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 2.667 8.437 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C 0.075 3.925 4 H 0.055 0.945 5 C -0.661 4.661 6 H 0.075 0.925 7 C -0.172 4.172 8 N -0.542 5.542 9 Si 0.870 3.130 10 H -0.214 1.214 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.245 5.245 14 C -0.060 4.060 15 C -0.101 4.101 16 H 0.086 0.914 17 C -0.065 4.065 18 N -0.377 5.377 19 C -0.139 4.139 20 C -0.150 4.150 21 C -0.020 4.020 22 H 0.061 0.939 23 C -0.200 4.200 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.323 2.808 6.656 11.795 hybrid contribution 0.685 -0.452 1.670 1.860 sum -8.639 2.356 8.326 12.227 Atomic orbital electron populations 1.21733 0.97910 0.99020 1.01303 1.22037 0.93422 0.99487 1.01235 1.19635 0.94510 0.90172 0.88142 0.94488 1.22538 0.91822 1.47891 1.03846 0.92487 1.25683 0.97234 0.92673 1.01629 1.70853 1.08464 1.41571 1.33303 0.84114 0.75626 0.77233 0.76074 1.21355 1.20990 1.19692 1.62256 1.57874 1.01139 1.03213 1.21865 0.97274 0.97824 0.88997 1.21217 0.99924 0.95494 0.93492 0.91429 1.21818 0.99177 0.95857 0.89661 1.58727 1.09045 1.65747 1.04229 1.21449 1.00124 0.94898 0.97392 1.21672 1.00452 0.98099 0.94747 1.21342 0.97877 0.89124 0.93614 0.93924 1.21850 1.00456 0.98954 0.98738 0.95078 0.92393 0.94116 0.92248 0.93137 0.92442 0.91609 0.94433 0.95737 0.91296 0.85087 0.85272 0.93064 0.91826 0.92765 0.92064 0.93020 0.93656 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.79 37.16 0.36 -2.24 16 2 C -0.12 -2.68 4.92 -26.73 -0.13 -2.82 16 3 C 0.18 4.20 0.97 -68.87 -0.07 4.13 16 4 H 0.04 0.88 4.50 -51.93 -0.23 0.65 16 5 C -0.62 -16.76 7.47 -34.44 -0.26 -17.02 16 6 H 0.06 1.68 6.10 -52.49 -0.32 1.36 16 7 C 0.03 0.94 5.32 -17.82 -0.09 0.85 16 8 N -0.91 -27.62 13.70 55.43 0.76 -26.86 16 9 Si 1.04 25.00 26.30 -169.99 -4.47 20.53 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.03 5.66 56.52 0.32 -5.71 16 13 N -0.52 -10.53 3.88 -220.14 -0.85 -11.38 16 14 C 0.07 1.34 4.08 -3.83 -0.02 1.32 16 15 C -0.08 -1.28 2.49 -90.54 -0.23 -1.51 16 16 H 0.07 1.06 8.14 -51.94 -0.42 0.63 16 17 C 0.07 0.90 6.18 -3.83 -0.02 0.88 16 18 N -0.85 -9.65 9.13 -10.37 -0.09 -9.74 16 19 C -0.10 -1.57 5.14 -26.61 -0.14 -1.71 16 20 C -0.11 -1.79 5.37 -26.65 -0.14 -1.94 16 21 C 0.09 1.72 2.13 -67.72 -0.14 1.58 16 22 H 0.04 0.96 7.18 -51.93 -0.37 0.58 16 23 C -0.14 -2.59 8.78 37.16 0.33 -2.26 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.04 7.73 -51.93 -0.40 0.63 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.37 4.76 -51.93 -0.25 1.12 16 28 H 0.05 1.10 6.14 -51.93 -0.32 0.78 16 29 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 30 H 0.07 1.30 6.00 -51.93 -0.31 0.99 16 31 H 0.04 0.84 6.45 -51.93 -0.33 0.50 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.34 3.44 8.99 -39.29 -0.35 3.09 16 35 H 0.34 3.17 9.08 -39.29 -0.36 2.81 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.34 6.18 -51.93 -0.32 1.02 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -28.56 306.62 -8.03 -36.58 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.44 Total: 6.99 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -0.55 Total: -20.74 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.19 Total: -47.99 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.47 Total: 20.53 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.56 -8.03 -36.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226351760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.958 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds