Wall clock time and date at job start Mon Mar 30 2020 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46746 * 2 1 4 4 H 1.08994 * 109.47163 * 54.70737 * 3 2 1 5 5 C 1.50694 * 109.46911 * 174.70714 * 3 2 1 6 6 H 1.08001 * 120.00209 * 119.99909 * 5 3 2 7 7 C 1.37881 * 120.00106 * 299.99750 * 5 3 2 8 8 N 1.31516 * 120.00002 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00063 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47085 * 60.00248 * 9 7 5 11 11 H 1.48496 * 109.47075 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47129 * 300.00221 * 9 7 5 13 13 N 1.46900 * 109.47006 * 294.70705 * 3 2 1 14 14 C 1.46897 * 110.99808 * 321.55578 * 13 3 2 15 15 C 1.46896 * 111.00075 * 85.51509 * 13 3 2 16 16 H 1.09004 * 108.82830 * 310.74153 * 15 13 3 17 17 C 1.54173 * 108.77461 * 192.28416 * 15 13 3 18 18 C 1.53810 * 111.97413 * 197.73309 * 17 15 13 19 19 C 1.50815 * 111.62144 * 319.03797 * 18 17 15 20 20 N 1.47639 * 108.04922 * 95.05640 * 19 18 17 21 21 C 1.39775 * 114.76001 * 277.20277 * 20 19 18 22 22 C 1.50751 * 108.85645 * 69.24685 * 15 13 3 23 23 H 1.08994 * 109.47273 * 72.17168 * 1 2 3 24 24 H 1.09001 * 109.46906 * 192.16851 * 1 2 3 25 25 H 1.08997 * 109.47067 * 312.16630 * 1 2 3 26 26 H 1.08996 * 109.47232 * 240.00277 * 2 1 3 27 27 H 1.09001 * 109.47165 * 119.99804 * 2 1 3 28 28 H 0.96998 * 119.99708 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.47143 * 183.95669 * 14 13 3 30 30 H 1.08999 * 109.47402 * 303.95064 * 14 13 3 31 31 H 1.08999 * 109.46849 * 63.96176 * 14 13 3 32 32 H 1.09005 * 108.97831 * 318.37583 * 17 15 13 33 33 H 1.09003 * 108.98133 * 77.08507 * 17 15 13 34 34 H 1.08996 * 109.05459 * 198.48669 * 18 17 15 35 35 H 1.09003 * 109.04965 * 79.58496 * 18 17 15 36 36 H 1.09001 * 109.75060 * 335.41565 * 19 18 17 37 37 H 1.09002 * 109.74571 * 214.69254 * 19 18 17 38 38 H 1.00900 * 110.99621 * 44.05599 * 20 19 18 39 39 H 1.09001 * 109.01872 * 182.86394 * 21 20 19 40 40 H 1.09000 * 109.02168 * 301.75425 * 21 20 19 41 41 H 1.09006 * 109.54550 * 93.85874 * 22 15 13 42 42 H 1.08994 * 109.62235 * 333.62679 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6013 1.9830 0.8387 5 6 3.5412 1.4446 0.1311 6 1 4.1502 1.8879 -0.6429 7 6 4.1373 0.8806 1.2391 8 7 3.3957 0.3405 2.1814 9 14 5.9982 0.8826 1.4012 10 1 6.4937 2.2825 1.4008 11 1 6.3850 0.2205 2.6729 12 1 6.5954 0.1458 0.2585 13 7 1.6573 2.0971 -1.2582 14 6 1.7720 1.1686 -2.3907 15 6 0.3014 2.6553 -1.1701 16 1 -0.3689 1.8908 -0.7773 17 6 -0.1663 3.0484 -2.5856 18 6 -1.3582 4.0198 -2.5489 19 6 -2.3543 3.6372 -1.4831 20 7 -2.0468 4.4176 -0.2682 21 6 -1.0322 3.8821 0.5303 22 6 0.3168 3.8249 -0.2192 23 1 -0.3633 0.3146 -0.9783 24 1 -0.3633 -1.0046 0.2166 25 1 -0.3633 0.6898 0.7617 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8151 -0.0560 2.9610 29 1 1.5508 1.6974 -3.3179 30 1 2.7856 0.7701 -2.4327 31 1 1.0645 0.3495 -2.2620 32 1 0.6612 3.5223 -3.1136 33 1 -0.4594 2.1477 -3.1251 34 1 -1.8545 4.0110 -3.5193 35 1 -0.9909 5.0262 -2.3477 36 1 -2.2719 2.5720 -1.2673 37 1 -3.3641 3.8676 -1.8230 38 1 -1.8564 5.3819 -0.4964 39 1 -0.9178 4.4999 1.4210 40 1 -1.3129 2.8730 0.8320 41 1 0.4621 4.7486 -0.7795 42 1 1.1278 3.7025 0.4986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226466328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:21 Heat of formation + Delta-G solvation = 12.662304 kcal Electronic energy + Delta-G solvation = -19207.217138 eV Core-core repulsion = 16608.378053 eV Total energy + Delta-G solvation = -2598.839085 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.58869 -36.96456 -33.32387 -32.24610 -31.25693 -29.99607 -27.42746 -25.67283 -24.65005 -23.47792 -22.13685 -21.30451 -19.32317 -18.36694 -16.46308 -16.02868 -15.55109 -14.88951 -14.61741 -14.27688 -13.82484 -13.65608 -13.28331 -12.84379 -12.61453 -12.09180 -11.74122 -11.63392 -11.52237 -11.23637 -11.08469 -11.01417 -10.84910 -10.73532 -10.60799 -10.46565 -10.17302 -10.07287 -9.91300 -9.67487 -9.43159 -8.87424 -8.29436 -8.04765 -6.93341 -5.96571 -3.99726 3.34420 3.38659 3.41949 4.43167 4.52560 4.92131 4.99168 5.16318 5.26162 5.33375 5.55725 5.57409 5.73105 5.82492 5.96145 5.99785 6.04211 6.08656 6.17051 6.18238 6.20420 6.23783 6.35431 6.43101 6.47659 6.57343 6.65637 6.73715 6.83751 6.94573 7.03848 7.29858 7.44566 7.51861 7.70459 7.76179 7.91777 8.28623 8.45860 8.66912 9.07444 9.64986 11.09502 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032284 B = 0.007194 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.089370 B = 3891.071605 C = 3979.789922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.216 3.784 4 H 0.040 0.960 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.531 5.531 14 C 0.030 3.970 15 C 0.068 3.932 16 H 0.054 0.946 17 C -0.114 4.114 18 C -0.148 4.148 19 C 0.065 3.935 20 N -0.699 5.699 21 C 0.071 3.929 22 C -0.152 4.152 23 H 0.040 0.960 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.260 0.740 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.339 0.661 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.214 4.743 -6.620 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.110 3.890 4 H 0.058 0.942 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.255 5.255 14 C -0.119 4.119 15 C -0.040 4.040 16 H 0.071 0.929 17 C -0.152 4.152 18 C -0.188 4.188 19 C -0.063 4.063 20 N -0.329 5.329 21 C -0.060 4.060 22 C -0.192 4.192 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.321 4.710 -6.159 12.124 hybrid contribution 1.336 -0.585 -0.309 1.491 sum -7.985 4.125 -6.468 11.073 Atomic orbital electron populations 1.22121 0.99763 0.99431 0.99443 1.22259 0.91446 1.02492 1.03035 1.19353 0.95341 0.88495 0.85843 0.94216 1.21131 0.91169 1.36147 1.04848 0.92206 1.24930 0.98004 0.95605 0.95854 1.69864 1.34747 1.39320 1.09580 0.86619 0.85866 0.78162 0.77068 1.20348 1.21473 1.20478 1.62482 1.21496 1.35742 1.05772 1.22325 1.01241 0.94692 0.93626 1.21817 0.91828 0.96636 0.93719 0.92889 1.22061 0.96962 0.98409 0.97736 1.22094 0.97075 0.99789 0.99812 1.21727 0.97556 0.98639 0.88380 1.57721 1.46919 1.06165 1.22095 1.20964 0.88833 1.00669 0.95559 1.22357 0.99489 0.98002 0.99328 0.94161 0.94911 0.93597 0.94180 0.88455 0.93046 0.93764 0.91681 0.96227 0.91646 0.92867 0.92306 0.92139 0.90967 0.91278 0.84140 0.91402 0.91602 0.92707 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.09 37.16 0.30 -2.68 16 2 C -0.15 -3.58 4.72 -26.73 -0.13 -3.71 16 3 C 0.22 5.26 1.56 -68.87 -0.11 5.15 16 4 H 0.04 1.06 6.12 -51.93 -0.32 0.74 16 5 C -0.49 -13.49 8.38 -34.44 -0.29 -13.78 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.27 11.29 55.43 0.63 -24.64 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.53 -11.14 4.42 -228.92 -1.01 -12.16 16 14 C 0.03 0.57 7.37 60.06 0.44 1.02 16 15 C 0.07 1.20 1.19 -68.23 -0.08 1.12 16 16 H 0.05 0.97 2.34 -51.93 -0.12 0.85 16 17 C -0.11 -1.68 3.93 -25.70 -0.10 -1.78 16 18 C -0.15 -1.79 5.39 -27.41 -0.15 -1.94 16 19 C 0.07 0.80 6.28 -4.51 -0.03 0.77 16 20 N -0.70 -9.03 6.38 -118.54 -0.76 -9.79 16 21 C 0.07 1.06 6.00 -6.75 -0.04 1.02 16 22 C -0.15 -2.59 4.98 -27.11 -0.14 -2.73 16 23 H 0.04 0.74 4.94 -51.93 -0.26 0.48 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.92 7.57 -51.93 -0.39 0.52 16 26 H 0.04 0.93 6.09 -51.93 -0.32 0.61 16 27 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.04 0.75 6.20 -51.93 -0.32 0.43 16 30 H 0.06 1.36 7.72 -51.93 -0.40 0.95 16 31 H 0.02 0.37 5.08 -51.93 -0.26 0.11 16 32 H 0.06 1.02 7.61 -51.93 -0.40 0.63 16 33 H 0.05 0.77 7.43 -51.93 -0.39 0.38 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.73 6.77 -51.93 -0.35 0.37 16 36 H 0.07 0.98 6.66 -51.93 -0.35 0.64 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.34 3.91 8.10 -39.29 -0.32 3.59 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.07 7.47 -51.93 -0.39 0.69 16 41 H 0.05 0.89 7.11 -51.93 -0.37 0.52 16 42 H 0.08 1.74 6.20 -51.93 -0.32 1.42 16 LS Contribution 294.19 15.07 4.43 4.43 Total: -1.00 -27.38 294.19 -8.95 -36.33 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.81 Total: 5.46 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -0.41 Total: -16.08 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -1.14 Total: -46.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.38 -8.95 -36.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226466328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.992 kcal (2) G-P(sol) polarization free energy of solvation -27.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds