Wall clock time and date at job start Mon Mar 30 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46746 * 2 1 4 4 H 1.08994 * 109.47163 * 54.70737 * 3 2 1 5 5 C 1.50694 * 109.46911 * 174.70714 * 3 2 1 6 6 H 1.08001 * 120.00209 * 119.99909 * 5 3 2 7 7 C 1.37881 * 120.00106 * 299.99750 * 5 3 2 8 8 N 1.31516 * 120.00002 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00063 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47085 * 60.00248 * 9 7 5 11 11 H 1.48496 * 109.47075 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47129 * 300.00221 * 9 7 5 13 13 N 1.46900 * 109.47006 * 294.70705 * 3 2 1 14 14 C 1.46897 * 110.99808 * 321.55578 * 13 3 2 15 15 C 1.46896 * 111.00075 * 85.51509 * 13 3 2 16 16 H 1.09004 * 108.82830 * 310.74153 * 15 13 3 17 17 C 1.54173 * 108.77461 * 192.28416 * 15 13 3 18 18 C 1.53810 * 111.97413 * 197.73309 * 17 15 13 19 19 C 1.50815 * 111.62144 * 319.03797 * 18 17 15 20 20 N 1.47639 * 108.04922 * 95.05640 * 19 18 17 21 21 C 1.39775 * 114.76001 * 277.20277 * 20 19 18 22 22 C 1.50751 * 108.85645 * 69.24685 * 15 13 3 23 23 H 1.08994 * 109.47273 * 72.17168 * 1 2 3 24 24 H 1.09001 * 109.46906 * 192.16851 * 1 2 3 25 25 H 1.08997 * 109.47067 * 312.16630 * 1 2 3 26 26 H 1.08996 * 109.47232 * 240.00277 * 2 1 3 27 27 H 1.09001 * 109.47165 * 119.99804 * 2 1 3 28 28 H 0.96998 * 119.99708 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.47143 * 183.95669 * 14 13 3 30 30 H 1.08999 * 109.47402 * 303.95064 * 14 13 3 31 31 H 1.08999 * 109.46849 * 63.96176 * 14 13 3 32 32 H 1.09005 * 108.97831 * 318.37583 * 17 15 13 33 33 H 1.09003 * 108.98133 * 77.08507 * 17 15 13 34 34 H 1.08996 * 109.05459 * 198.48669 * 18 17 15 35 35 H 1.09003 * 109.04965 * 79.58496 * 18 17 15 36 36 H 1.09001 * 109.75060 * 335.41565 * 19 18 17 37 37 H 1.09002 * 109.74571 * 214.69254 * 19 18 17 38 38 H 1.00900 * 110.99621 * 44.05599 * 20 19 18 39 39 H 1.09001 * 109.01872 * 182.86394 * 21 20 19 40 40 H 1.09000 * 109.02168 * 301.75425 * 21 20 19 41 41 H 1.09006 * 109.54550 * 93.85874 * 22 15 13 42 42 H 1.08994 * 109.62235 * 333.62679 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6013 1.9830 0.8387 5 6 3.5412 1.4446 0.1311 6 1 4.1502 1.8879 -0.6429 7 6 4.1373 0.8806 1.2391 8 7 3.3957 0.3405 2.1814 9 14 5.9982 0.8826 1.4012 10 1 6.4937 2.2825 1.4008 11 1 6.3850 0.2205 2.6729 12 1 6.5954 0.1458 0.2585 13 7 1.6573 2.0971 -1.2582 14 6 1.7720 1.1686 -2.3907 15 6 0.3014 2.6553 -1.1701 16 1 -0.3689 1.8908 -0.7773 17 6 -0.1663 3.0484 -2.5856 18 6 -1.3582 4.0198 -2.5489 19 6 -2.3543 3.6372 -1.4831 20 7 -2.0468 4.4176 -0.2682 21 6 -1.0322 3.8821 0.5303 22 6 0.3168 3.8249 -0.2192 23 1 -0.3633 0.3146 -0.9783 24 1 -0.3633 -1.0046 0.2166 25 1 -0.3633 0.6898 0.7617 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8151 -0.0560 2.9610 29 1 1.5508 1.6974 -3.3179 30 1 2.7856 0.7701 -2.4327 31 1 1.0645 0.3495 -2.2620 32 1 0.6612 3.5223 -3.1136 33 1 -0.4594 2.1477 -3.1251 34 1 -1.8545 4.0110 -3.5193 35 1 -0.9909 5.0262 -2.3477 36 1 -2.2719 2.5720 -1.2673 37 1 -3.3641 3.8676 -1.8230 38 1 -1.8564 5.3819 -0.4964 39 1 -0.9178 4.4999 1.4210 40 1 -1.3129 2.8730 0.8320 41 1 0.4621 4.7486 -0.7795 42 1 1.1278 3.7025 0.4986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226466328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:20 Heat of formation + Delta-G solvation = -5.872436 kcal Electronic energy + Delta-G solvation = -19208.020865 eV Core-core repulsion = 16608.378053 eV Total energy + Delta-G solvation = -2599.642812 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96508 -38.43255 -35.05255 -33.66962 -32.82819 -31.53181 -29.26081 -27.14989 -25.95387 -25.19399 -23.66319 -22.47707 -21.10376 -19.75138 -18.35782 -17.50108 -17.00358 -16.55022 -15.94999 -15.75108 -15.28910 -15.13708 -14.62360 -14.57146 -13.92918 -13.42292 -13.31529 -13.21817 -13.08348 -12.96927 -12.75222 -12.66654 -12.40674 -12.30625 -12.08683 -11.91589 -11.85359 -11.61329 -11.40259 -11.25105 -11.07748 -10.80716 -10.37943 -9.14466 -8.61054 -8.06958 -6.17447 1.40960 1.41813 1.49626 2.43301 3.19639 3.36120 3.56666 3.83797 3.98904 4.19335 4.30400 4.32270 4.41514 4.44412 4.51390 4.58638 4.66033 4.68454 4.76664 4.81768 4.90057 4.96539 4.99883 5.05606 5.11629 5.16028 5.24655 5.28008 5.28857 5.36410 5.47584 5.55937 5.62183 5.77841 5.88220 6.35627 6.39320 6.62906 6.66613 6.86908 6.97251 7.51535 8.96908 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032284 B = 0.007194 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.089370 B = 3891.071605 C = 3979.789922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.146 4.146 3 C 0.226 3.774 4 H 0.010 0.990 5 C -0.513 4.513 6 H 0.047 0.953 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.545 5.545 14 C 0.035 3.965 15 C 0.069 3.931 16 H 0.048 0.952 17 C -0.109 4.109 18 C -0.140 4.140 19 C 0.065 3.935 20 N -0.697 5.697 21 C 0.086 3.914 22 C -0.146 4.146 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.260 0.740 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.024 0.976 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.350 0.650 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.456 5.441 -8.088 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.118 3.882 4 H 0.028 0.972 5 C -0.552 4.552 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.268 5.268 14 C -0.114 4.114 15 C -0.039 4.039 16 H 0.066 0.934 17 C -0.147 4.147 18 C -0.179 4.179 19 C -0.063 4.063 20 N -0.327 5.327 21 C -0.047 4.047 22 C -0.186 4.186 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.171 0.829 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.576 5.421 -7.645 14.131 hybrid contribution 1.706 -0.773 0.126 1.877 sum -8.870 4.648 -7.519 12.523 Atomic orbital electron populations 1.21955 0.96861 1.00283 1.00254 1.22074 0.93996 1.01352 1.01131 1.19031 0.93664 0.88842 0.86626 0.97189 1.21432 0.92961 1.36126 1.04689 0.93479 1.25630 1.02049 0.95336 0.95613 1.69996 1.36199 1.39775 1.09850 0.85696 0.81064 0.78153 0.77177 1.20087 1.20932 1.19958 1.62384 1.24068 1.35725 1.04666 1.22295 1.00066 0.94870 0.94128 1.21913 0.89762 0.96351 0.95902 0.93412 1.22014 0.97942 0.99497 0.95209 1.22032 0.95862 0.98911 1.01131 1.21797 0.98871 0.97725 0.87884 1.57710 1.45526 1.06896 1.22599 1.20757 0.88007 1.00026 0.95884 1.22310 0.99445 0.98276 0.98566 0.92401 0.93396 0.94265 0.94436 0.91825 0.93130 0.90989 0.93885 0.95799 0.92347 0.92117 0.89801 0.91767 0.92359 0.88867 0.82851 0.90999 0.93253 0.91839 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.09 71.98 0.58 -4.77 16 2 C -0.15 -6.97 4.72 30.60 0.14 -6.83 16 3 C 0.23 11.33 1.56 44.17 0.07 11.40 16 4 H 0.01 0.57 6.12 -2.39 -0.01 0.56 16 5 C -0.51 -28.89 8.38 25.60 0.21 -28.68 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 7 C 0.01 0.67 5.29 84.66 0.45 1.12 16 8 N -0.92 -53.24 11.29 21.45 0.24 -53.00 16 9 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.54 -23.00 4.42 -878.17 -3.88 -26.88 16 14 C 0.03 1.32 7.37 127.69 0.94 2.26 16 15 C 0.07 2.36 1.19 44.58 0.05 2.41 16 16 H 0.05 1.71 2.34 -2.38 -0.01 1.71 16 17 C -0.11 -2.94 3.93 31.26 0.12 -2.82 16 18 C -0.14 -2.88 5.39 30.16 0.16 -2.72 16 19 C 0.07 1.39 6.28 85.45 0.54 1.92 16 20 N -0.70 -16.37 6.38 -528.94 -3.37 -19.75 16 21 C 0.09 2.49 6.00 88.07 0.53 3.02 16 22 C -0.15 -4.97 4.98 30.35 0.15 -4.82 16 23 H 0.06 2.05 4.94 -2.39 -0.01 2.04 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 26 H 0.04 1.76 6.09 -2.39 -0.01 1.75 16 27 H 0.06 3.49 5.95 -2.39 -0.01 3.47 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.07 2.31 6.20 -2.38 -0.01 2.29 16 30 H 0.04 1.80 7.72 -2.39 -0.02 1.78 16 31 H 0.02 0.87 5.08 -2.39 -0.01 0.86 16 32 H 0.06 1.68 7.61 -2.38 -0.02 1.66 16 33 H 0.06 1.56 7.43 -2.39 -0.02 1.54 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.31 6.77 -2.39 -0.02 1.29 16 36 H 0.06 1.43 6.66 -2.39 -0.02 1.41 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.35 7.08 8.10 -89.69 -0.73 6.36 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.60 7.47 -2.39 -0.02 1.58 16 41 H 0.06 2.01 7.11 -2.38 -0.02 1.99 16 42 H 0.04 1.87 6.20 -2.39 -0.01 1.85 16 Total: -1.00 -60.16 294.19 -0.75 -60.91 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.28 Total: 20.48 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 3.95 Total: -28.50 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -7.01 Total: -99.63 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -60.16 -0.75 -60.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226466328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.042 kcal (2) G-P(sol) polarization free energy of solvation -60.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds