Wall clock time and date at job start Mon Mar 30 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47790 * 2 1 4 4 H 1.09008 * 109.46359 * 299.84114 * 3 2 1 5 5 C 1.50693 * 109.47555 * 179.83968 * 3 2 1 6 6 H 1.08005 * 120.00019 * 238.50563 * 5 3 2 7 7 C 1.37881 * 120.00010 * 58.50183 * 5 3 2 8 8 N 1.31519 * 119.99878 * 203.89162 * 7 5 3 9 9 Si 1.86801 * 120.00050 * 23.88999 * 7 5 3 10 10 H 1.48497 * 109.47039 * 91.52949 * 9 7 5 11 11 H 1.48504 * 109.46841 * 211.52803 * 9 7 5 12 12 H 1.48502 * 109.46855 * 331.52477 * 9 7 5 13 13 N 1.46898 * 109.46860 * 59.83380 * 3 2 1 14 14 C 1.46904 * 110.99952 * 162.72877 * 13 3 2 15 15 C 1.46901 * 111.00043 * 38.77812 * 13 3 2 16 16 H 1.08997 * 109.67415 * 316.60821 * 15 13 3 17 17 C 1.54520 * 109.57379 * 196.29614 * 15 13 3 18 18 C 1.45878 * 111.67052 * 162.96040 * 17 15 13 19 19 C 1.53978 * 112.67391 * 61.49614 * 18 17 15 20 20 N 1.44297 * 108.30919 * 278.59445 * 19 18 17 21 21 C 1.47946 * 113.64360 * 95.39788 * 20 19 18 22 22 C 1.50539 * 109.57373 * 76.91968 * 15 13 3 23 23 H 1.09009 * 109.46824 * 305.42633 * 1 2 3 24 24 H 1.08995 * 109.47100 * 65.42541 * 1 2 3 25 25 H 1.09000 * 109.47200 * 185.43200 * 1 2 3 26 26 H 1.09006 * 109.46653 * 239.99408 * 2 1 3 27 27 H 1.09004 * 109.47406 * 120.00383 * 2 1 3 28 28 H 0.96998 * 119.99698 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.46988 * 291.97541 * 14 13 3 30 30 H 1.09003 * 109.46908 * 51.96777 * 14 13 3 31 31 H 1.08997 * 109.47009 * 171.96942 * 14 13 3 32 32 H 1.09006 * 109.04010 * 283.52346 * 17 15 13 33 33 H 1.08996 * 109.04208 * 42.39313 * 17 15 13 34 34 H 1.09002 * 108.83949 * 182.32254 * 18 17 15 35 35 H 1.08997 * 108.84168 * 300.66552 * 18 17 15 36 36 H 1.09002 * 109.69237 * 38.29851 * 19 18 17 37 37 H 1.08999 * 109.69651 * 158.88765 * 19 18 17 38 38 H 1.00896 * 111.00337 * 221.34299 * 20 19 18 39 39 H 1.08990 * 108.71252 * 79.13222 * 21 20 19 40 40 H 1.09007 * 108.70951 * 197.26910 * 21 20 19 41 41 H 1.09010 * 108.78835 * 332.45352 * 22 15 13 42 42 H 1.08991 * 108.79124 * 90.66845 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6791 1.9554 -0.8915 5 6 3.5471 1.4424 0.0040 6 1 4.0850 1.9317 0.8025 7 6 4.2391 0.8175 -1.0118 8 7 5.4692 0.3988 -0.8087 9 14 3.4296 0.5656 -2.6763 10 1 3.7381 1.7209 -3.5567 11 1 3.9480 -0.6808 -3.2952 12 1 1.9591 0.4562 -2.5000 13 7 1.5473 2.1361 1.1974 14 6 2.3210 3.3582 1.4538 15 6 1.5658 1.2464 2.3663 16 1 1.1855 0.2642 2.0859 17 6 0.6829 1.8433 3.4852 18 6 0.3413 0.8447 4.4922 19 6 1.5804 0.2743 5.2067 20 7 2.1567 -0.7484 4.3676 21 6 3.2585 -0.2603 3.5092 22 6 2.9756 1.1143 2.8772 23 1 -0.3633 0.5958 0.8375 24 1 -0.3633 0.4274 -0.9345 25 1 -0.3633 -1.0230 0.0973 26 1 1.8932 -0.5140 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.9562 -0.0404 -1.5234 29 1 3.3365 3.0907 1.7460 30 1 2.3514 3.9655 0.5491 31 1 1.8493 3.9252 2.2563 32 1 1.2206 2.6617 3.9640 33 1 -0.2350 2.2323 3.0445 34 1 -0.3132 1.3024 5.2340 35 1 -0.1944 0.0272 4.0098 36 1 2.3084 1.0689 5.3701 37 1 1.2864 -0.1578 6.1632 38 1 2.4504 -1.5429 4.9158 39 1 4.1648 -0.1890 4.1103 40 1 3.4256 -0.9828 2.7102 41 1 3.6657 1.2678 2.0473 42 1 3.1520 1.8874 3.6249 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226466332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:23 Heat of formation + Delta-G solvation = 24.559447 kcal Electronic energy + Delta-G solvation = -19528.145512 eV Core-core repulsion = 16929.822326 eV Total energy + Delta-G solvation = -2598.323186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.39570 -36.50985 -33.15385 -32.20398 -31.85290 -30.22091 -27.20366 -25.55439 -24.74940 -23.58876 -21.88583 -20.08141 -19.82648 -18.09051 -17.15850 -16.04296 -15.36887 -14.94585 -14.34171 -14.13435 -13.75801 -13.32956 -13.10558 -12.64452 -12.47332 -12.18639 -11.90163 -11.86698 -11.65089 -11.22775 -10.91145 -10.85754 -10.76814 -10.51099 -10.44328 -10.29012 -10.14455 -9.77681 -9.65258 -9.61778 -9.21873 -8.94772 -8.31583 -7.95957 -6.97290 -6.18310 -4.06279 3.29041 3.39255 3.44678 4.41820 4.57345 5.03423 5.12579 5.27968 5.39521 5.46206 5.69410 5.85794 5.90376 6.03767 6.10173 6.14367 6.18728 6.22154 6.31505 6.36656 6.41819 6.50102 6.55207 6.63586 6.76556 6.82498 6.83543 6.85970 6.87380 6.97304 7.09245 7.25663 7.39528 7.45866 7.60106 7.68583 7.77661 8.26380 8.30287 8.48329 8.90302 9.53326 10.92347 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.009232 C = 0.008645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.446490 B = 3032.046155 C = 3238.142208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.186 3.814 4 H 0.031 0.969 5 C -0.560 4.560 6 H 0.089 0.911 7 C 0.087 3.913 8 N -0.880 5.880 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.252 1.252 13 N -0.530 5.530 14 C 0.034 3.966 15 C 0.093 3.907 16 H 0.100 0.900 17 C -0.109 4.109 18 C -0.109 4.109 19 C 0.069 3.931 20 N -0.700 5.700 21 C 0.074 3.926 22 C -0.175 4.175 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.032 0.968 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.263 0.737 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.054 0.946 38 H 0.335 0.665 39 H 0.017 0.983 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 -0.242 8.531 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.078 3.922 4 H 0.049 0.951 5 C -0.597 4.597 6 H 0.106 0.894 7 C -0.118 4.118 8 N -0.516 5.516 9 Si 0.683 3.317 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.176 1.176 13 N -0.252 5.252 14 C -0.114 4.114 15 C -0.016 4.016 16 H 0.118 0.882 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.061 4.061 20 N -0.332 5.332 21 C -0.054 4.054 22 C -0.213 4.213 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.152 0.848 39 H 0.035 0.965 40 H 0.091 0.909 41 H 0.148 0.852 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.178 -0.073 7.873 11.352 hybrid contribution 1.441 -0.311 -0.156 1.483 sum -6.737 -0.384 7.717 10.251 Atomic orbital electron populations 1.21829 0.97804 0.99472 1.01393 1.22098 0.93585 0.99328 1.01201 1.19588 0.93575 0.89945 0.89047 0.95149 1.21654 0.90525 1.37280 1.10264 0.89380 1.24895 0.94614 0.93602 0.98680 1.70086 1.12495 1.36444 1.32530 0.87275 0.81568 0.77434 0.85423 1.20870 1.21630 1.17614 1.62601 1.52867 1.05936 1.03821 1.22205 0.96864 0.92657 0.99692 1.21459 0.93143 0.97617 0.89400 0.88194 1.20595 1.00287 0.97619 0.96186 1.20464 0.97214 0.99209 0.97897 1.21556 0.96351 0.94193 0.94045 1.59107 1.36933 1.09902 1.27223 1.22152 0.89671 0.98171 0.95430 1.22728 1.01978 0.94166 1.02461 0.91889 0.94157 0.94849 0.93231 0.91716 0.92751 0.94242 0.92687 0.94293 0.93776 0.92091 0.93273 0.91457 0.94507 0.92746 0.84770 0.96508 0.90855 0.85203 0.94727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.32 37.16 0.35 -2.42 16 2 C -0.12 -2.70 4.24 -26.73 -0.11 -2.81 16 3 C 0.19 4.26 1.72 -68.87 -0.12 4.14 16 4 H 0.03 0.75 6.95 -51.92 -0.36 0.38 16 5 C -0.56 -14.46 6.77 -34.44 -0.23 -14.70 16 6 H 0.09 2.42 4.23 -52.48 -0.22 2.20 16 7 C 0.09 2.36 5.21 -17.82 -0.09 2.26 16 8 N -0.88 -25.37 13.96 55.43 0.77 -24.60 16 9 Si 0.86 20.75 25.89 -169.99 -4.40 16.35 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.25 -5.87 5.68 56.52 0.32 -5.54 16 13 N -0.53 -10.78 4.27 -228.81 -0.98 -11.76 16 14 C 0.03 0.68 8.21 60.07 0.49 1.17 16 15 C 0.09 1.72 0.71 -68.14 -0.05 1.67 16 16 H 0.10 1.98 3.98 -51.93 -0.21 1.77 16 17 C -0.11 -1.74 4.36 -29.30 -0.13 -1.87 16 18 C -0.11 -1.53 5.37 -29.59 -0.16 -1.68 16 19 C 0.07 0.93 6.15 -4.71 -0.03 0.90 16 20 N -0.70 -10.36 6.18 -113.79 -0.70 -11.06 16 21 C 0.07 1.30 6.44 -2.77 -0.02 1.28 16 22 C -0.18 -3.36 3.26 -27.48 -0.09 -3.45 16 23 H 0.06 1.16 6.43 -51.92 -0.33 0.82 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.13 4.88 -51.93 -0.25 0.88 16 27 H 0.06 1.44 6.03 -51.93 -0.31 1.12 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.04 0.83 4.68 -51.93 -0.24 0.59 16 30 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.04 0.68 7.30 -51.93 -0.38 0.30 16 32 H 0.04 0.70 7.09 -51.93 -0.37 0.33 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 36 H 0.04 0.53 6.79 -51.93 -0.35 0.18 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.33 4.23 8.89 -39.29 -0.35 3.88 16 39 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.13 3.00 3.20 -51.92 -0.17 2.83 16 42 H 0.03 0.64 6.59 -51.93 -0.34 0.30 16 LS Contribution 290.48 15.07 4.38 4.38 Total: -1.00 -26.94 290.48 -8.03 -34.96 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.91 Total: 7.24 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -0.19 Total: -15.50 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.91 Total: -47.43 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.40 Total: 16.35 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.94 -8.03 -34.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226466332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.524 kcal (2) G-P(sol) polarization free energy of solvation -26.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds